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KJC3_005070-T1, KJC3_005070-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005070-T1
Unique NameKJC3_005070-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:1502977..1504751-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005070-T1 ID=KJC3_005070-T1|Name=KJC3_005070-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1775bp|location=Sequence derived from alignment at ch4:1502977..1504751- (Aspergillus niger KJC3)
ATGTACTATCCCCCGATCATTGTTGTAAATAGTCCCACTCTACGCTACGC
TACGCCACCCCACCCCTACCCCACAGCACTATATAGTCTATCTGGTGGTT
GTCCGGATATGGCTGGCGCCTTTTGACTGCCTCGCAGTGCTTAATGAGAT
AATGCCCGGTTTGTGATTTTATCGGTTTATAGAATGCATTATAAATTACA
TGAATATCAGTATAAGATTCTACCTTCCGCGTCTTATAATTGCTGCTGGT
ATCTAAAAGCCATACAAGACCATAAGTTATCACATTCATGCAATCACCAA
TACGGTATGCTATCATATCAGCGAATTAAACACATACCACATGTCGAATC
CATACTATACTAATGTGCCCATAGTTCTCTTCTTCCTCCTAGCCACCTCC
TTTTCTTGTCGCTGTGGCTAACTAGTATAATCCGACTAGCTATTCTCTCT
TCCTAACTATAAGTTCCAATAACCTTCCATACATGATACTAAAGGAATAT
GAAGGAAGCATTAAATACCATATTCTACACAAAAAAGATAAAATTTTAGT
TCGATACCTAATACCCCATTTAGACATTACAACCACCCCCCTCCCCCTAA
TATCATACCCATCCATCCACGAAGTATTCAAGTATAGTTCCTTAATAGTT
CAACCATCCAAACCGATTCCCCCCAATCCCGCTGACTCACCGCCCACCTC
CCAAACCCAAACTCATCTAACCACATCCAGCCACTAGCTCCCGAACCAGC
TACTTAGGCGAGCGCCAAGCCCTCCACCCGCACAAGCAAGAAGAGCGGAT
TAATAAAAATTGAACAAAAAAAAGAGAGAAGTTCACGATAATTGTTATTC
CGCCCGGCAATCCATCCAGACTCTCTCAACGGCCATCATCACCTTACCGA
ACCCCGATAGTTCAGGTCTTGATTGGCAGTCCAGCCTCCCTTGCGGTACG
CCTCTCCTTCCTCTCCTTTTCTTTCTTTGTCTTTTCGTCGACGACAACTA
ACCTTCAGGTCCATCCAGCATCTCAAATCCCACCGGTCACCCCACCGTCT
CAACTACAATTCAAGATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGA
GGGCCCTGTACGTCTACCACCATACCATTATTATTATCATCATCATATAT
ATACATGTCTCAATGCGATGGATATGGACATGGTATTTTATATATATTCA
ATTGCGACAGTACTAACAAGCAATTCCTGCTATTATAGAAGGTCCACAAG
ATCCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTG
CTCGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTC
CCGTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCC
AACGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAA
GCGTCTCATCGAGTAAGCACCCCCCACCTCCTCCTTTGAAGATGTTGGAA
GGGAAAGGATGGAAAGCTAATATCTGTGTTCAGCCTCCTCGCCCCCACCG
AGACCGTCAAGCAGATCATCATCAACATCGAGGCTGGTGTTGAGGTTGAG
GTCACCATTGCTGCTTAAATGTACCCCTACCTTCTCTGATGGTTTGGGTT
CGTGACAGGGGTGGCGCGGACGATGAGGATATGTTTTGTGGTGCTGCTGC
GGATGCAGGGTGCGTGCTAGGCATTCGTCGATACCCGCCAGTTCCTGGCT
TGAAAATGAAAAAGTTCAAAAAGCA
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Coding sequence (CDS) from alignment at ch4:1502977..1504751-

>KJC3_005070-T1 ID=KJC3_005070-T1|Name=KJC3_005070-T1|organism=Aspergillus niger KJC3|type=CDS|length=2490bp|location=Sequence derived from alignment at ch4:1502977..1504751- (Aspergillus niger KJC3)
CCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGG
CTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATC
CGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTC
GGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCG
TCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAAC
GGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCG
TCTCATCGACATCTCAAATCCCACCGGTCACCCCACCGTCTCAACTACAA
TTCAAGATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTAC
TCTCTCAACGGCCATCATCACCTTACCGAACCCCGATAGTTCAGGTCTTG
ATTGGCAGTCCAGCCTCCCTTGCGATGTACTATCCCCCGATCATTGTTCC
TCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGGCT
GGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATCCG
TATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTCGG
AGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCGTC
CGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAACGG
TGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCGTC
TCATCGACATCTCAAATCCCACCGGTCACCCCACCGTCTCAACTACAATT
CAAGATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTACTC
TCTCAACGGCCATCATCACCTTACCGAACCCCGATAGTTCAGGTCTTGAT
TGGCAGTCCAGCCTCCCTTGCGATGTACTATCCCCCGATCATTGTTCCTC
CTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGGCTGG
TGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATCCGTA
TCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTCGGAG
CTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCGTCCG
TCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAACGGTG
AGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCGTCTC
ATCGACATCTCAAATCCCACCGGTCACCCCACCGTCTCAACTACAATTCA
AGATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTACTCTC
TCAACGGCCATCATCACCTTACCGAACCCCGATAGTTCAGGTCTTGATTG
GCAGTCCAGCCTCCCTTGCGATGTACTATCCCCCGATCATTGTTCCTCCT
CGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGGCTGGTG
TTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATCCGTATC
ACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTCGGAGCT
GATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCGTCCGTC
TTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAACGGTGAG
GGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCGTCTCAT
CGACATCTCAAATCCCACCGGTCACCCCACCGTCTCAACTACAATTCAAG
ATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTACTCTCTC
AACGGCCATCATCACCTTACCGAACCCCGATAGTTCAGGTCTTGATTGGC
AGTCCAGCCTCCCTTGCGATGTACTATCCCCCGATCATTGTTCCTCCTCG
CCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGGCTGGTGTT
GAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATCCGTATCAC
CCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTCGGAGCTGA
TCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCGTCCGTCTT
CCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAACGGTGAGGG
TTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCGTCTCATCG
ACATCTCAAATCCCACCGGTCACCCCACCGTCTCAACTACAATTCAAGAT
GTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTACTCTCTCAA
CGGCCATCATCACCTTACCGAACCCCGATAGTTCAGGTCTTGATTGGCAG
TCCAGCCTCCCTTGCGATGTACTATCCCCCGATCATTGTT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS20KJC3_005070Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005070-T1KJC3_005070-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005070-T1.cdsKJC3_005070-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005070-T1.utr3p1KJC3_005070-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005070-T1.exon5KJC3_005070-T1.exon5Aspergillus niger KJC3exon
KJC3_005070-T1.exon4KJC3_005070-T1.exon4Aspergillus niger KJC3exon
KJC3_005070-T1.exon3KJC3_005070-T1.exon3Aspergillus niger KJC3exon
KJC3_005070-T1.exon2KJC3_005070-T1.exon2Aspergillus niger KJC3exon
KJC3_005070-T1.exon1KJC3_005070-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
NoteBUSCO:EOG09265CFP
DBxrefInterPro:IPR018268
DBxrefInterPro:IPR005729
DBxrefInterPro:IPR036838
DBxrefInterPro:IPR027486
DBxrefInterPro:IPR001848
DBxrefPFAM:PF00338
Product40S ribosomal protein S20
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:1502977..1504751 -
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