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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1600790..1601842- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005109-T1 ID=KJC3_005109-T1|Name=KJC3_005109-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1053bp|location=Sequence derived from alignment at ch4:1600790..1601842- (Aspergillus niger KJC3)
ATGCCACGAGAATACGCCCCCGCCCACAGAAAACGCAAATCCCACGATAT
CTCCGACGATGCAGATGCTGCTGCAGCGCCCGGAGCCGGAGCAGGCCCGC
GCAAGAAAATCCTCCTCCCCAAGAAAGAACACAAATACCCGTCTGTCAAC
GAGCTCAAGAAACGTATCCGGGATGTGAAGCGTCTACTCAACAAGGCGGA
TTTGCCGGCCGATGCGCGCATCGTGCAGGAGCGCGCGTTGTCCGGGTATG
AGAAGGAATTGGAGGATGAGTTGAAGAGGAGGGATCGGTCGAAGATGATT
AAGAAGTATCATTTTGTTAGGTTTTTGGGTATGCTTTTCTTCCTCTACCC
CCGCCCTCTTTCTTACGATGTCTTGCTGTGCCGTGGGTTTTATATGGGGG
GCTGTTGCTAATTCGATACTCGATCTGTAGACCGCAAAACCGCAACCAAA
GACGTGAACCGGCTGGTGCGCCGGGAAAAGGAAGTCTCGAGTGCTGGACC
CGATGCCATGGATACCAAGACCAAGGAGAAGAAACTTGCTTCGTTGGCGG
AGAAGCTCCGAGTCGCTCGCGTGAACTTGAACTATACTATTTACTATCCA
TTGGATGAGAAGTATATCGCCTTGTACGCGGAGCAGAAGAAGAAGGTTAA
GGGAGACGGTGCGGAGGATGGTGGTGATGGCGCTGACTCGGACGGTGATG
CACGGTTTGGAATGGTGCATGCGACGGTTGCCGATAAGCCGGCGATGTGG
CATGTGGTGGAGAAGTGTATGAAGGATGGGACGTTGGATATGTTGAGGGA
TGGAAAGCTGGAGTCTGGGGCGAAGGCTGGGGAGAAGGATCGGAAGAAGG
AGGAGAGAAGTCAGAGGGCTGGTGATAAGGCGAAGAAGAGTCAAGAGCGT
GGGGTGTCGTCGTCGCAGGCTGGAAAGAGCAGGGACAGGTCCAGGAAGGT
GGATGATAGGAAGAGGTCTAGGGGCCCTGCTGAAGATCATGTCATGCGGG
ATGCAGGCAATGATGACGGCGATGAGAGTGATGGCGGTTTCTTTGAGATG
TGA back to topCoding sequence (CDS) from alignment at ch4:1600790..1601842- >KJC3_005109-T1 ID=KJC3_005109-T1|Name=KJC3_005109-T1|organism=Aspergillus niger KJC3|type=CDS|length=1902bp|location=Sequence derived from alignment at ch4:1600790..1601842- (Aspergillus niger KJC3)
ACCGCAAAACCGCAACCAAAGACGTGAACCGGCTGGTGCGCCGGGAAAAG
GAAGTCTCGAGTGCTGGACCCGATGCCATGGATACCAAGACCAAGGAGAA
GAAACTTGCTTCGTTGGCGGAGAAGCTCCGAGTCGCTCGCGTGAACTTGA
ACTATACTATTTACTATCCATTGGATGAGAAGTATATCGCCTTGTACGCG
GAGCAGAAGAAGAAGGTTAAGGGAGACGGTGCGGAGGATGGTGGTGATGG
CGCTGACTCGGACGGTGATGCACGGTTTGGAATGGTGCATGCGACGGTTG
CCGATAAGCCGGCGATGTGGCATGTGGTGGAGAAGTGTATGAAGGATGGG
ACGTTGGATATGTTGAGGGATGGAAAGCTGGAGTCTGGGGCGAAGGCTGG
GGAGAAGGATCGGAAGAAGGAGGAGAGAAGTCAGAGGGCTGGTGATAAGG
CGAAGAAGAGTCAAGAGCGTGGGGTGTCGTCGTCGCAGGCTGGAAAGAGC
AGGGACAGGTCCAGGAAGGTGGATGATAGGAAGAGGTCTAGGGGCCCTGC
TGAAGATCATGTCATGCGGGATGCAGGCAATGATGACGGCGATGAGAGTG
ATGGCGGTTTCTTTGAGATGTGAATGCCACGAGAATACGCCCCCGCCCAC
AGAAAACGCAAATCCCACGATATCTCCGACGATGCAGATGCTGCTGCAGC
GCCCGGAGCCGGAGCAGGCCCGCGCAAGAAAATCCTCCTCCCCAAGAAAG
AACACAAATACCCGTCTGTCAACGAGCTCAAGAAACGTATCCGGGATGTG
AAGCGTCTACTCAACAAGGCGGATTTGCCGGCCGATGCGCGCATCGTGCA
GGAGCGCGCGTTGTCCGGGTATGAGAAGGAATTGGAGGATGAGTTGAAGA
GGAGGGATCGGTCGAAGATGATTAAGAAGTATCATTTTGTTAGGTTTTTG
GACCGCAAAACCGCAACCAAAGACGTGAACCGGCTGGTGCGCCGGGAAAA
GGAAGTCTCGAGTGCTGGACCCGATGCCATGGATACCAAGACCAAGGAGA
AGAAACTTGCTTCGTTGGCGGAGAAGCTCCGAGTCGCTCGCGTGAACTTG
AACTATACTATTTACTATCCATTGGATGAGAAGTATATCGCCTTGTACGC
GGAGCAGAAGAAGAAGGTTAAGGGAGACGGTGCGGAGGATGGTGGTGATG
GCGCTGACTCGGACGGTGATGCACGGTTTGGAATGGTGCATGCGACGGTT
GCCGATAAGCCGGCGATGTGGCATGTGGTGGAGAAGTGTATGAAGGATGG
GACGTTGGATATGTTGAGGGATGGAAAGCTGGAGTCTGGGGCGAAGGCTG
GGGAGAAGGATCGGAAGAAGGAGGAGAGAAGTCAGAGGGCTGGTGATAAG
GCGAAGAAGAGTCAAGAGCGTGGGGTGTCGTCGTCGCAGGCTGGAAAGAG
CAGGGACAGGTCCAGGAAGGTGGATGATAGGAAGAGGTCTAGGGGCCCTG
CTGAAGATCATGTCATGCGGGATGCAGGCAATGATGACGGCGATGAGAGT
GATGGCGGTTTCTTTGAGATGTGAATGCCACGAGAATACGCCCCCGCCCA
CAGAAAACGCAAATCCCACGATATCTCCGACGATGCAGATGCTGCTGCAG
CGCCCGGAGCCGGAGCAGGCCCGCGCAAGAAAATCCTCCTCCCCAAGAAA
GAACACAAATACCCGTCTGTCAACGAGCTCAAGAAACGTATCCGGGATGT
GAAGCGTCTACTCAACAAGGCGGATTTGCCGGCCGATGCGCGCATCGTGC
AGGAGCGCGCGTTGTCCGGGTATGAGAAGGAATTGGAGGATGAGTTGAAG
AGGAGGGATCGGTCGAAGATGATTAAGAAGTATCATTTTGTTAGGTTTTT
GG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006364 | rRNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264UKL |
| DBxref | InterPro:IPR019310 |
| DBxref | PFAM:PF10153 |
| Product | 18S rRNA maturation protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1600790..1601842 - |
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