|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1634231..1635292- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005124-T1 ID=KJC3_005124-T1|Name=KJC3_005124-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1062bp|location=Sequence derived from alignment at ch4:1634231..1635292- (Aspergillus niger KJC3)
ATGTCCGCGACGCTGGCGGATCCGTATCGAGAGTATGCTATTGATTATTC
TCAACATGCTACCTGCAAACCTGAGGAACACGCAGGCACGCTTGTTTACC
ACGCACAGCAGCCGCATCTCCAGCACCATAAGCAGCCCGAGCCTCCATTC
TCTCAGGGAGCCTCTCATAGCACGACGGCATTTGAGCAACATCATGCGAA
CGCGACCGTGTTATCAGCAGCCACTCAGCAACCGTCAGTTCATGATATGT
CGCAGAGCGTTGTCCTCGGCCCGCCCCAGATGCTCCCACGACACCTTCCA
GTGCAGTATCCACCTGCCAGCTTCGAAATCCCCCCTATCCAGCGCGAGAA
AAAACGCCATCACTCGGAGACCGAAGAGGATGGGAACCCCGACCATGGCC
TGCGGCCGCAGCTATCAGTCCTCTCAGCTGACGCCCCTCACGAACCCTCG
CACTCTCCCGAAATGCTCTTCGGTGTCCATGGCGCATCATCTCAGCAGCA
TCCCATGTCAAACCATGGCTTTGGGCCCACGGACTCTGTGGCCCTGCCGC
AACATCACCATCACCATCGACTCCCGCCCCATGCAGCGCTGCGCGCCCCA
GGGCGTCATGGAGTGAATGTGGAATCTCCTCCTTTGCCCTCGGGCCCGCC
GAGTGTGGTGGGCCAGCCTGGAATGCCTGATCCAGCCCCCAGGCCTCGAG
GACCAAAACTGAAGTTTACTCCCGAAGAGGACGCTCTACTGGTGGAGTTG
AAGGAAAACAAGAACTTGACGTGGAAGCAAATTGCAGACTTCTTCCCGGG
CCGAACGAGCGGTACCTTGCAAGTCCGATACTGCACCAAGCTGAAGGCTA
AGGATGTAGCTTGGAGTGACGAAATGGTTCGATTTGCTCCTGATGTATTT
CTACGCCTGTCTCACACATGCTAATGAAGGGAATAGGTACAAAGGCTGCA
GCGGGCAATGCACGAGTACGAGAACGATCGGTGGCGCATCATTGCAGGGA
AGGTTGGAAATGGCTTCACCCCAGCTGCTTGCCGCGAGAAAGCCATGCAG
CTCCATGAGTAA back to topCoding sequence (CDS) from alignment at ch4:1634231..1635292- >KJC3_005124-T1 ID=KJC3_005124-T1|Name=KJC3_005124-T1|organism=Aspergillus niger KJC3|type=CDS|length=2004bp|location=Sequence derived from alignment at ch4:1634231..1635292- (Aspergillus niger KJC3)
GTACAAAGGCTGCAGCGGGCAATGCACGAGTACGAGAACGATCGGTGGCG
CATCATTGCAGGGAAGGTTGGAAATGGCTTCACCCCAGCTGCTTGCCGCG
AGAAAGCCATGCAGCTCCATGAGTAAATGTCCGCGACGCTGGCGGATCCG
TATCGAGAGTATGCTATTGATTATTCTCAACATGCTACCTGCAAACCTGA
GGAACACGCAGGCACGCTTGTTTACCACGCACAGCAGCCGCATCTCCAGC
ACCATAAGCAGCCCGAGCCTCCATTCTCTCAGGGAGCCTCTCATAGCACG
ACGGCATTTGAGCAACATCATGCGAACGCGACCGTGTTATCAGCAGCCAC
TCAGCAACCGTCAGTTCATGATATGTCGCAGAGCGTTGTCCTCGGCCCGC
CCCAGATGCTCCCACGACACCTTCCAGTGCAGTATCCACCTGCCAGCTTC
GAAATCCCCCCTATCCAGCGCGAGAAAAAACGCCATCACTCGGAGACCGA
AGAGGATGGGAACCCCGACCATGGCCTGCGGCCGCAGCTATCAGTCCTCT
CAGCTGACGCCCCTCACGAACCCTCGCACTCTCCCGAAATGCTCTTCGGT
GTCCATGGCGCATCATCTCAGCAGCATCCCATGTCAAACCATGGCTTTGG
GCCCACGGACTCTGTGGCCCTGCCGCAACATCACCATCACCATCGACTCC
CGCCCCATGCAGCGCTGCGCGCCCCAGGGCGTCATGGAGTGAATGTGGAA
TCTCCTCCTTTGCCCTCGGGCCCGCCGAGTGTGGTGGGCCAGCCTGGAAT
GCCTGATCCAGCCCCCAGGCCTCGAGGACCAAAACTGAAGTTTACTCCCG
AAGAGGACGCTCTACTGGTGGAGTTGAAGGAAAACAAGAACTTGACGTGG
AAGCAAATTGCAGACTTCTTCCCGGGCCGAACGAGCGGTACCTTGCAAGT
CCGATACTGCACCAAGCTGAAGGCTAAGGATGTAGCTTGGAGTGACGAAA
TGGTACAAAGGCTGCAGCGGGCAATGCACGAGTACGAGAACGATCGGTGG
CGCATCATTGCAGGGAAGGTTGGAAATGGCTTCACCCCAGCTGCTTGCCG
CGAGAAAGCCATGCAGCTCCATGAGTAAATGTCCGCGACGCTGGCGGATC
CGTATCGAGAGTATGCTATTGATTATTCTCAACATGCTACCTGCAAACCT
GAGGAACACGCAGGCACGCTTGTTTACCACGCACAGCAGCCGCATCTCCA
GCACCATAAGCAGCCCGAGCCTCCATTCTCTCAGGGAGCCTCTCATAGCA
CGACGGCATTTGAGCAACATCATGCGAACGCGACCGTGTTATCAGCAGCC
ACTCAGCAACCGTCAGTTCATGATATGTCGCAGAGCGTTGTCCTCGGCCC
GCCCCAGATGCTCCCACGACACCTTCCAGTGCAGTATCCACCTGCCAGCT
TCGAAATCCCCCCTATCCAGCGCGAGAAAAAACGCCATCACTCGGAGACC
GAAGAGGATGGGAACCCCGACCATGGCCTGCGGCCGCAGCTATCAGTCCT
CTCAGCTGACGCCCCTCACGAACCCTCGCACTCTCCCGAAATGCTCTTCG
GTGTCCATGGCGCATCATCTCAGCAGCATCCCATGTCAAACCATGGCTTT
GGGCCCACGGACTCTGTGGCCCTGCCGCAACATCACCATCACCATCGACT
CCCGCCCCATGCAGCGCTGCGCGCCCCAGGGCGTCATGGAGTGAATGTGG
AATCTCCTCCTTTGCCCTCGGGCCCGCCGAGTGTGGTGGGCCAGCCTGGA
ATGCCTGATCCAGCCCCCAGGCCTCGAGGACCAAAACTGAAGTTTACTCC
CGAAGAGGACGCTCTACTGGTGGAGTTGAAGGAAAACAAGAACTTGACGT
GGAAGCAAATTGCAGACTTCTTCCCGGGCCGAACGAGCGGTACCTTGCAA
GTCCGATACTGCACCAAGCTGAAGGCTAAGGATGTAGCTTGGAGTGACGA
AATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR017930 |
| DBxref | InterPro:IPR017877 |
| DBxref | InterPro:IPR001005 |
| DBxref | PFAM:PF13921 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1634231..1635292 - |
|
