You are here

Home

KJC3_005182-T1, KJC3_005182-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005182-T1
Unique NameKJC3_005182-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:1830461..1831100-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005182-T1 ID=KJC3_005182-T1|Name=KJC3_005182-T1|organism=Aspergillus niger KJC3|type=mRNA|length=640bp|location=Sequence derived from alignment at ch4:1830461..1831100- (Aspergillus niger KJC3)
GTCAAGGATGACCAGTCCCACCACCCACTCACTAGCGTCGATTATCGCCT
ACCTATATGACTAGAATCCGAATCTACAACACAATCAACGACTATTAAAT
CCCTTATCACCCCTCCCACAAGTGAAAACTGGAAACGGCATCATCAAACT
AAGAAAATCAAAATGGCGGACGCCGAGCCCCTCTACGTCTACAAGTTGAT
CCCGTCGACATCTCCGGTCCGGGAACCTCTCCCCGATCGGTTGCCGGTTA
GCGAGCTGGATGAGAAATCGGGATTCGTACACCTCTCCACAGCATTTCAA
GTACCAAATACTCTCAAAATGTTTTTCAAAGATGAGCCGCTGGTCTACGT
GCTCAGGATTCCCTTTGAGGGCATAGCCGGCCAGGTCCGGTGGGAAAATC
CTGAGGGGACGGTCTGCGGGCCGCGACCGAAAGAGGGCCTGTTCCCAGTA
TGTTTCCTCAGCAGCAGCCCTCCCCGCATGGATACAGAGATGAAGAATGG
AACTAATCAGATTTTCTGAATAGCATCTGTACAATGATCTCAAGCTGGGT
AAGGATGAGATAGAGACTGTTGCTATCTGGAAGAATGATGAGGGCTGGGA
TAAAGCCCTCCTGCAGGCAAAACCATGGCTGCTGTATTGA
back to top

Coding sequence (CDS) from alignment at ch4:1830461..1831100-

>KJC3_005182-T1 ID=KJC3_005182-T1|Name=KJC3_005182-T1|organism=Aspergillus niger KJC3|type=CDS|length=804bp|location=Sequence derived from alignment at ch4:1830461..1831100- (Aspergillus niger KJC3)
CATCTGTACAATGATCTCAAGCTGGGTAAGGATGAGATAGAGACTGTTGC
TATCTGGAAGAATGATGAGGGCTGGGATAAAGCCCTCCTGCAGGCAAAAC
CATGGCTGCTGTATTGAATGGCGGACGCCGAGCCCCTCTACGTCTACAAG
TTGATCCCGTCGACATCTCCGGTCCGGGAACCTCTCCCCGATCGGTTGCC
GGTTAGCGAGCTGGATGAGAAATCGGGATTCGTACACCTCTCCACAGCAT
TTCAAGTACCAAATACTCTCAAAATGTTTTTCAAAGATGAGCCGCTGGTC
TACGTGCTCAGGATTCCCTTTGAGGGCATAGCCGGCCAGGTCCGGTGGGA
AAATCCTGAGGGGACGGTCTGCGGGCCGCGACCGAAAGAGGGCCTGTTCC
CACATCTGTACAATGATCTCAAGCTGGGTAAGGATGAGATAGAGACTGTT
GCTATCTGGAAGAATGATGAGGGCTGGGATAAAGCCCTCCTGCAGGCAAA
ACCATGGCTGCTGTATTGAATGGCGGACGCCGAGCCCCTCTACGTCTACA
AGTTGATCCCGTCGACATCTCCGGTCCGGGAACCTCTCCCCGATCGGTTG
CCGGTTAGCGAGCTGGATGAGAAATCGGGATTCGTACACCTCTCCACAGC
ATTTCAAGTACCAAATACTCTCAAAATGTTTTTCAAAGATGAGCCGCTGG
TCTACGTGCTCAGGATTCCCTTTGAGGGCATAGCCGGCCAGGTCCGGTGG
GAAAATCCTGAGGGGACGGTCTGCGGGCCGCGACCGAAAGAGGGCCTGTT
CCCA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005182KJC3_005182Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005182-T1KJC3_005182-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005182-T1.cdsKJC3_005182-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005182-T1.exon2KJC3_005182-T1.exon2Aspergillus niger KJC3exon
KJC3_005182-T1.exon1KJC3_005182-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005182-T1.utr5p1KJC3_005182-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009297
DBxrefPFAM:PF06108
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:1830461..1831100 -
Powered by Drupal