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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1879373..1881697- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005198-T1 ID=KJC3_005198-T1|Name=KJC3_005198-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2325bp|location=Sequence derived from alignment at ch4:1879373..1881697- (Aspergillus niger KJC3)
GAAGGAGAATTTAAAGGTGAAGCCCATGGGAGCCCACCCGACATCGGCAG
AGGTTAGGTAATCACTCGGGGATGGTTCGGCATTTGAGCATGACTCGGTA
GTAGCCGAATCCTGTCAAGTTGCTGCAGATCGTTGAATCGTCTATTCCCA
TAGTATGAGAATTTTTATCACCATTGGTGCTGTTCTTTTAGATAGCTGAA
AGTATTCTTCCGAGCCCCTGATACTACATTATATCCCCCGTAGTCCGTGT
GCTGAGCTTATATCGCGGGCTGCAGAAATCCTAATCCGCGGCCAACCAGC
GCAGGTGATCGTCGGCTTTTTCTGCCGCGAACTCGAACTCCAACTGCACC
TCCGTTTCTCTTCGGCTCTTCTTCTCCCCGCCACGTCCATTTCGCCTCCA
CATCCACTCTCCGCGCATGCAAGCATGATCTGAACTGTGAAGCGCCTCTT
CTTCGTATCCGATCGGACCTCCTCGACTACATTTCCTCCCACAGCCCTCC
GATATCGTTCCTCATGGCCCGCTCCGCCATTGTCCAAGAATACGCCCCTC
CGTCCTCCGCACCCACCTTCTCCGTCGACCGCAAAGTCACCCACGAGCGC
CAACAAAATGGCATTTCTCGCCCCAATGGATATCGCGTCTCCTGGCATGC
CAATCCCGCCGTCGAACCACACCACTTTGGCCAGTCCCATCCCATGAAGC
CATGGCGTCTGACCCTCACAAAACAGCTGGTCATGGCCTACGGCATGCAC
CATGCGATGGACCTCTACCTGGCGCGCGCAGCCACCTACGAAGAGCTGGC
GGACTTCCACAAATCAGATTACCTCGATTTCCTACAGCAAGTCGTCCCCG
GCGATATGGAGAATCCTGAACAGAGCGAGAACATCGCGCGCTTCAACTTC
GGTGACGATTGCCCCATCTTCGACGGCCTCTACAACTACTGCTCCCTCTA
CGCCGGCGGTACCATCGACGCAGCCCGAAAGCTCTGCAACAACCAGTCGG
AGATCGCAGTCAACTGGTCTGGTGGCCTACATCACGCCAAAAAAGCCGAA
GCCAGCGGTTTCTGCTACATCAACGACATCGTCCTCGGCATCCTGCAGCT
CCTCCGCCTGCACCCGCGCGTCATGTACATCGACATCGACGTCCACCACG
GCGACGGCGTGGAACAAGCCTTCTGGTCCACCGACCGCGTCCTCACCGTC
TCCTTCCACAAATACGACAAGGACAACTTCTTCCCCGGCACCGGTGGCCT
CGACAGCACGGGGCCCACCCATCCCCTCAACCCGGGCGCCCACCACTCCG
TCAACGTCCCCCTCCACGACGGCATCGACGACGAATCCTACATCCAACTC
TTCCGCGACGTCGTCGGCTCCTGCGTCGAAGTCTACCGACCGGGCGCCAT
CGTCCTCCAATGCGGTGCCGACTCCCTCGGCTGCGACCGTCTCGGCTGCT
TCAACCTGAACGTCGCCGCCCACGGCGCCTGCGTCGCCTTCGTCAAAACT
TTTAACCTCCCTCTCCTCGTCGTCGGTGGCGGTGGCTACACCCCACGCAA
CGTCTCCCGCGCCTGGGCTCACGAAACCTCCATCCTCATCGACGCCCAGG
ATACCATCGACCCTCACATCCCCGAAACCGTCACCTTCCGCAACCACTTC
GGCCCTGACTTCTCTCTCTTTCCGCCCCTCTCGGAAATGCGCAAGCTCGA
AAACAAGAACCCTCGCACTTATCTCGCCGGCTTGCTCCAGTCCATCCGCG
AACAGCTTCGATACATCCAAGGTGCCCCGAGCGTGCAAATGAGCTTCATT
CCTCCGGATATTCTCGGTCTTCGCGAAGACACGGAGAAGGAAATCGAAGA
AGAGACAGCCATGATGGAGGAGGAGCGCGAGGAACGATCTGGTGGTGGTA
GTTTAGGGAAGTCGAGTCGACGGAGGGATTTGGAGAGAGGTGCTGGGCAG
CGGGGGGAGCTGTTTTAAAATACCACTTCCTCTTTATGCCCACGTACACA
CACTTTTTTTTATTTATTGTTGTGTCTGTCTCGCATTTGAATATGTCTTT
GGAGTTGGTGGATTGGAATCTATCGGGCTGGATGATGGCTTTTTTCTACC
TTGTCTAAAATTCATCTAATTGCGTTGTTTATACGTTTCTTCTTTGTGGA
TGGTGGGCTTTGGTTGTGTGCTACTTATAGAAAGTATACACCTGTATTAG
AGGGGAGAAGGAGGAGAAGGAGGAGGAGGTGGTGGTGTGATGATATCCAT
GTGTCTTGTATGTTACAGGTGCTAGAAGTGTCTTTAGAGAAGATGAAAAA
AGGAAACATCAGGACATATCGTCGG back to topCoding sequence (CDS) from alignment at ch4:1879373..1881697- >KJC3_005198-T1 ID=KJC3_005198-T1|Name=KJC3_005198-T1|organism=Aspergillus niger KJC3|type=CDS|length=1455bp|location=Sequence derived from alignment at ch4:1879373..1881697- (Aspergillus niger KJC3)
ATGGCCCGCTCCGCCATTGTCCAAGAATACGCCCCTCCGTCCTCCGCACC
CACCTTCTCCGTCGACCGCAAAGTCACCCACGAGCGCCAACAAAATGGCA
TTTCTCGCCCCAATGGATATCGCGTCTCCTGGCATGCCAATCCCGCCGTC
GAACCACACCACTTTGGCCAGTCCCATCCCATGAAGCCATGGCGTCTGAC
CCTCACAAAACAGCTGGTCATGGCCTACGGCATGCACCATGCGATGGACC
TCTACCTGGCGCGCGCAGCCACCTACGAAGAGCTGGCGGACTTCCACAAA
TCAGATTACCTCGATTTCCTACAGCAAGTCGTCCCCGGCGATATGGAGAA
TCCTGAACAGAGCGAGAACATCGCGCGCTTCAACTTCGGTGACGATTGCC
CCATCTTCGACGGCCTCTACAACTACTGCTCCCTCTACGCCGGCGGTACC
ATCGACGCAGCCCGAAAGCTCTGCAACAACCAGTCGGAGATCGCAGTCAA
CTGGTCTGGTGGCCTACATCACGCCAAAAAAGCCGAAGCCAGCGGTTTCT
GCTACATCAACGACATCGTCCTCGGCATCCTGCAGCTCCTCCGCCTGCAC
CCGCGCGTCATGTACATCGACATCGACGTCCACCACGGCGACGGCGTGGA
ACAAGCCTTCTGGTCCACCGACCGCGTCCTCACCGTCTCCTTCCACAAAT
ACGACAAGGACAACTTCTTCCCCGGCACCGGTGGCCTCGACAGCACGGGG
CCCACCCATCCCCTCAACCCGGGCGCCCACCACTCCGTCAACGTCCCCCT
CCACGACGGCATCGACGACGAATCCTACATCCAACTCTTCCGCGACGTCG
TCGGCTCCTGCGTCGAAGTCTACCGACCGGGCGCCATCGTCCTCCAATGC
GGTGCCGACTCCCTCGGCTGCGACCGTCTCGGCTGCTTCAACCTGAACGT
CGCCGCCCACGGCGCCTGCGTCGCCTTCGTCAAAACTTTTAACCTCCCTC
TCCTCGTCGTCGGTGGCGGTGGCTACACCCCACGCAACGTCTCCCGCGCC
TGGGCTCACGAAACCTCCATCCTCATCGACGCCCAGGATACCATCGACCC
TCACATCCCCGAAACCGTCACCTTCCGCAACCACTTCGGCCCTGACTTCT
CTCTCTTTCCGCCCCTCTCGGAAATGCGCAAGCTCGAAAACAAGAACCCT
CGCACTTATCTCGCCGGCTTGCTCCAGTCCATCCGCGAACAGCTTCGATA
CATCCAAGGTGCCCCGAGCGTGCAAATGAGCTTCATTCCTCCGGATATTC
TCGGTCTTCGCGAAGACACGGAGAAGGAAATCGAAGAAGAGACAGCCATG
ATGGAGGAGGAGCGCGAGGAACGATCTGGTGGTGGTAGTTTAGGGAAGTC
GAGTCGACGGAGGGATTTGGAGAGAGGTGCTGGGCAGCGGGGGGAGCTGT
TTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016575 | histone deacetylation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004407 | histone deacetylase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005198-T1.utr3p1 | KJC3_005198-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR023696 |
| DBxref | InterPro:IPR037138 |
| DBxref | InterPro:IPR023801 |
| DBxref | InterPro:IPR000286 |
| DBxref | InterPro:IPR003084 |
| DBxref | PFAM:PF00850 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1879373..1881697 - |
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