You are here

Home

KJC3_005271-T1, KJC3_005271-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005271-T1
Unique NameKJC3_005271-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:2142860..2144418+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005271-T1 ID=KJC3_005271-T1|Name=KJC3_005271-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1559bp|location=Sequence derived from alignment at ch4:2142860..2144418+ (Aspergillus niger KJC3)
ATGGCCTGCTCATCGCAATCTGTCACCATTGAGTCCTATCCTGAGGCGGC
GGTGGCCTCCGCCTATGCCACCCCCGGAGAAGACACCGGCCTCCTGAGAG
ATCGCCGTCGCAGACACTCTTTTCACACAGCTCGCAAGTTGTCCTGCGAC
TATGATGCGGACGCTGTATTCCTACGGGTACGCTGCATTCTCGTCTTCAC
CCCCAATTCTGTCCCTGACTGACCTCTCCGTAGGTGGAGCTCTTCCTGGC
CGAACTCGAACGACGCCTCCACTGGCTCGAACAATACCGCAAGTCCCACA
TGGATCAGATCGACGCCAGTCTCCGCCGTGGATACGCCACCCTGGAAGCC
GTGCGAGATTCCTGCTCCCATGCCTCCGGGGAGCTGATGGGTGGTGGGAA
AAAGCGGGCCAAGATCCTCGTCGAGACGCTGGAGGACCGCTACATGGATG
CACTCGCAACAAAGGAGACGCTCGAACAAAAGGCCCAGGCGGGAGTCCGA
CTGATGGAGTCGTTTCTGGTCGAGCTGGAGTCCCGCGCCCATGCGGTCCG
CGACCGAGGGCTCTACGGCACTCTGGACGATGGATGGAAGGCGATGGACT
CGAAGCTGGTGCATGCCCGTGAGGTGGTCGACGAGGGTATGGAACGGGCA
CGACGGGCGAAAGACGCGCTGCGGGAGAGCATCGATCGAGCTATCCTGCT
GGCCCAGGAGCAACGGTTGATCACGTATGCGGATCTCCCGCACCCGTGGC
GGGTGAACCCGCATATTCTGCAGGGGTATCGGTTCACACACTCCAAGGTG
GAATGCTTGACCTCGGTGTTCTCGCCTTCGAATGAGACGTTCAACATCTG
GTCCCACCTGATTGGGCTTTTCATCGTCCTATCGGTGGCCTTTTACTTTT
ATCCGCTGAACCCCAACTTCCACCTCAGCTCGCGGACGGACATTCTGGTG
GCCGCCGTCTTCTTCTTCGCGGCGTGCAAGTGCCTTGTCTGCAGCACACT
GTGGCACACGATGAACAGCATTGCCAGCCAAACGCTCATGGAACGGTTTG
CCTGTGTGGACTACACGGGCATCTCGATGCTGGTGGCAGCCTCGATTGTG
ACGACCGAGTACACGGCTTTCTACTGCGAGCCGGTGTCACGGTGGACTTA
CATTTTGCTGACCATGTCGCTTGGTATCGGAGGTGTGATCCTGCCGTGGC
ACCCAACCTTCAACCGGGCGGATATGGCATGGGCGCGCGTGGCCTTTTAC
GTGTCGCTAGCGCTGACGGGATTCGCGCCGTTGGCACAGCTGACGTACAC
GCGTGGACTCGCCTGGTGTTTGTATTTCTACGCACCAGTGGTGAAGAGCA
TCATGGTGTACTTCGTGGGAGCGTGCGTTTATGCGTCGCAGGTGCCGGAG
CGGTGGCGGCCAGGACTGTTCGATTATGTGGGTGGCAGTCACAACATCTG
GCATCTGGCTGTCTTGGGAGGGATCCTGTTCCATTATTGCGCGATGCAAG
ATCTGTTCGCGGGAGCGTTTCAGCGGGCGCAGGGCGAGTGTCCGAACCTG
GCCAAGTAG
back to top

Coding sequence (CDS) from alignment at ch4:2142860..2144418+

>KJC3_005271-T1 ID=KJC3_005271-T1|Name=KJC3_005271-T1|organism=Aspergillus niger KJC3|type=CDS|length=3006bp|location=Sequence derived from alignment at ch4:2142860..2144418+ (Aspergillus niger KJC3)
ATGGCCTGCTCATCGCAATCTGTCACCATTGAGTCCTATCCTGAGGCGGC
GGTGGCCTCCGCCTATGCCACCCCCGGAGAAGACACCGGCCTCCTGAGAG
ATCGCCGTCGCAGACACTCTTTTCACACAGCTCGCAAGTTGTCCTGCGAC
TATGATGCGGACGCTGTATTCCTACGGGTGGAGCTCTTCCTGGCCGAACT
CGAACGACGCCTCCACTGGCTCGAACAATACCGCAAGTCCCACATGGATC
AGATCGACGCCAGTCTCCGCCGTGGATACGCCACCCTGGAAGCCGTGCGA
GATTCCTGCTCCCATGCCTCCGGGGAGCTGATGGGTGGTGGGAAAAAGCG
GGCCAAGATCCTCGTCGAGACGCTGGAGGACCGCTACATGGATGCACTCG
CAACAAAGGAGACGCTCGAACAAAAGGCCCAGGCGGGAGTCCGACTGATG
GAGTCGTTTCTGGTCGAGCTGGAGTCCCGCGCCCATGCGGTCCGCGACCG
AGGGCTCTACGGCACTCTGGACGATGGATGGAAGGCGATGGACTCGAAGC
TGGTGCATGCCCGTGAGGTGGTCGACGAGGGTATGGAACGGGCACGACGG
GCGAAAGACGCGCTGCGGGAGAGCATCGATCGAGCTATCCTGCTGGCCCA
GGAGCAACGGTTGATCACGTATGCGGATCTCCCGCACCCGTGGCGGGTGA
ACCCGCATATTCTGCAGGGGTATCGGTTCACACACTCCAAGGTGGAATGC
TTGACCTCGGTGTTCTCGCCTTCGAATGAGACGTTCAACATCTGGTCCCA
CCTGATTGGGCTTTTCATCGTCCTATCGGTGGCCTTTTACTTTTATCCGC
TGAACCCCAACTTCCACCTCAGCTCGCGGACGGACATTCTGGTGGCCGCC
GTCTTCTTCTTCGCGGCGTGCAAGTGCCTTGTCTGCAGCACACTGTGGCA
CACGATGAACAGCATTGCCAGCCAAACGCTCATGGAACGGTTTGCCTGTG
TGGACTACACGGGCATCTCGATGCTGGTGGCAGCCTCGATTGTGACGACC
GAGTACACGGCTTTCTACTGCGAGCCGGTGTCACGGTGGACTTACATTTT
GCTGACCATGTCGCTTGGTATCGGAGGTGTGATCCTGCCGTGGCACCCAA
CCTTCAACCGGGCGGATATGGCATGGGCGCGCGTGGCCTTTTACGTGTCG
CTAGCGCTGACGGGATTCGCGCCGTTGGCACAGCTGACGTACACGCGTGG
ACTCGCCTGGTGTTTGTATTTCTACGCACCAGTGGTGAAGAGCATCATGG
TGTACTTCGTGGGAGCGTGCGTTTATGCGTCGCAGGTGCCGGAGCGGTGG
CGGCCAGGACTGTTCGATTATGTGGGTGGCAGTCACAACATCTGGCATCT
GGCTGTCTTGGGAGGGATCCTGTTCCATTATTGCGCGATGCAAGATCTGT
TCGCGGGAGCGTTTCAGCGGGCGCAGGGCGAGTGTCCGAACCTGGCCAAG
TAGATGGCCTGCTCATCGCAATCTGTCACCATTGAGTCCTATCCTGAGGC
GGCGGTGGCCTCCGCCTATGCCACCCCCGGAGAAGACACCGGCCTCCTGA
GAGATCGCCGTCGCAGACACTCTTTTCACACAGCTCGCAAGTTGTCCTGC
GACTATGATGCGGACGCTGTATTCCTACGGGTGGAGCTCTTCCTGGCCGA
ACTCGAACGACGCCTCCACTGGCTCGAACAATACCGCAAGTCCCACATGG
ATCAGATCGACGCCAGTCTCCGCCGTGGATACGCCACCCTGGAAGCCGTG
CGAGATTCCTGCTCCCATGCCTCCGGGGAGCTGATGGGTGGTGGGAAAAA
GCGGGCCAAGATCCTCGTCGAGACGCTGGAGGACCGCTACATGGATGCAC
TCGCAACAAAGGAGACGCTCGAACAAAAGGCCCAGGCGGGAGTCCGACTG
ATGGAGTCGTTTCTGGTCGAGCTGGAGTCCCGCGCCCATGCGGTCCGCGA
CCGAGGGCTCTACGGCACTCTGGACGATGGATGGAAGGCGATGGACTCGA
AGCTGGTGCATGCCCGTGAGGTGGTCGACGAGGGTATGGAACGGGCACGA
CGGGCGAAAGACGCGCTGCGGGAGAGCATCGATCGAGCTATCCTGCTGGC
CCAGGAGCAACGGTTGATCACGTATGCGGATCTCCCGCACCCGTGGCGGG
TGAACCCGCATATTCTGCAGGGGTATCGGTTCACACACTCCAAGGTGGAA
TGCTTGACCTCGGTGTTCTCGCCTTCGAATGAGACGTTCAACATCTGGTC
CCACCTGATTGGGCTTTTCATCGTCCTATCGGTGGCCTTTTACTTTTATC
CGCTGAACCCCAACTTCCACCTCAGCTCGCGGACGGACATTCTGGTGGCC
GCCGTCTTCTTCTTCGCGGCGTGCAAGTGCCTTGTCTGCAGCACACTGTG
GCACACGATGAACAGCATTGCCAGCCAAACGCTCATGGAACGGTTTGCCT
GTGTGGACTACACGGGCATCTCGATGCTGGTGGCAGCCTCGATTGTGACG
ACCGAGTACACGGCTTTCTACTGCGAGCCGGTGTCACGGTGGACTTACAT
TTTGCTGACCATGTCGCTTGGTATCGGAGGTGTGATCCTGCCGTGGCACC
CAACCTTCAACCGGGCGGATATGGCATGGGCGCGCGTGGCCTTTTACGTG
TCGCTAGCGCTGACGGGATTCGCGCCGTTGGCACAGCTGACGTACACGCG
TGGACTCGCCTGGTGTTTGTATTTCTACGCACCAGTGGTGAAGAGCATCA
TGGTGTACTTCGTGGGAGCGTGCGTTTATGCGTCGCAGGTGCCGGAGCGG
TGGCGGCCAGGACTGTTCGATTATGTGGGTGGCAGTCACAACATCTGGCA
TCTGGCTGTCTTGGGAGGGATCCTGTTCCATTATTGCGCGATGCAAGATC
TGTTCGCGGGAGCGTTTCAGCGGGCGCAGGGCGAGTGTCCGAACCTGGCC
AAGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005271KJC3_005271Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005271-T1.exon1KJC3_005271-T1.exon1Aspergillus niger KJC3exon
KJC3_005271-T1.exon2KJC3_005271-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005271-T1.cdsKJC3_005271-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005271-T1KJC3_005271-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR004254
DBxrefPFAM:PF03006
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:2142860..2144418 +
Powered by Drupal