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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2615158..2618706+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005401-T1 ID=KJC3_005401-T1|Name=KJC3_005401-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3549bp|location=Sequence derived from alignment at ch4:2615158..2618706+ (Aspergillus niger KJC3)
CAGGTTTCCCAGCTCTTCCTCAGTCACACTCCCGGTTCCCTTGTCCGTAC
ACCTTGTTCGCCATGGCGTCTGGGCGTAAGGACTTTTTGAGCCAAGCGGC
TCCCGAGAACTATGTTGCCGGTCTTGGTCGCGGTGCCACTGGCTTCACCA
CCCGTTCAGATCTCGGACCCGCGCGAGAAGGCCCCACGCCAGAACAGATC
CAGGCAGCACTGGCGAAGCGAGCCCAGCTGCTTGGAGCTGCTCCTCCCAC
AGCTTATGGCGCAGGGCGAGAGAAGGGTGGTAAAGATGAGAAGGCGGATG
AAGAGGAAGATGACGAGCGATTTCAAGACCCGGACAATGAAGTCGGGCTA
TTCGCATATGGTCAGTTCGACCAAGAGGATGATGAGGCGGACCGCATCTA
CAGAGAGGTGGATGAAAAGATGGACAAGCGCCGGAAGATGAGAAGGTTAG
TTCCCCGCCCCTTTGCCTCCCCTTCTGCTATTTCTATGAAGCGATTTGTT
CATCCGCTTCTCCATATGCGGTTTGCCTGGACAGATTACCGACGTAATTC
CTCCACCATTCACAGGGAAGCTCGCGAACAGCAAGAACGAGAAGACTACG
AACGCAAGAACCCTAAGATTCAGCAGCAATTTGCAGATCTAAAACGATCC
TTAGCCTCTGTCTCCGAGGACGAGTGGGCAAACCTCCCGGAGGTGGGAGA
TCTCACCGGAAAGAACCGACGCGCAAAGCAGAACCTTCGGCAGAGATTCT
ACGCAGTACCGGACAGTGTGATCGCGAGCGCAAGAGACTCGACCCAGTTT
GAGACAACGATTGCAGAGGACGGGACCCAGACCGCAGCCAATGGAGCGGA
GGCAGCTGATGGGACAATCACCAATTTTGCAGACATCAGTGCTGCGCGTG
ATAAAGTCTTGAAAGTTAGGCTCGACCAAGCGGCGATGGGATCATCTGGG
GATTCTGCGTCTGGAAGCGCTACCAACATCGATCCAAAGGGCTACCTTAC
AAGTCTCACGCAGTCTGAGCTGAAAGCTGGAGAAGTAGAAATTGGAGACA
TTAAGCGGGTCCGCGTTTTGTTGGAATCTGTAACGAAAACGAATCCCAAG
CATGCGCCGGGATGGATTGCGCTGGCGCGTCTAGAAGAATTAGCCGGTAA
AATCGTGACTGCCAGGAATGTAATCGCCAAGGGTTGCGAGTTGTGCCCGA
AAAGTGAAGATGCCTGGCTTGAAAACATTCGCCTTAACGAGGGCCATAAT
GCCAAGGTGATTGCGGCTAATGCCATCAAGAACAATGACCGTTCTACAAG
ACTATGGATCGAAGCCATGCGATTGGAGACAGAGCCTCGTGCGAAGAAGA
ACGTTCTTAGACAGGCGATCCTTCACATACCTCAGTCTGTTACGATCTGG
AAAGAAGCCGTCAACCTGGAGGACGACCCTGCCGATGCACGTCTGCTTCT
GGCGAAGGCAGTTGAGATGATCCCCCTTTCCGTTGAGCTCTGGCTGGCTC
TGGCTCGCCTAGAATCACCGGAGAATGCACAGAAGGTTCTCAATGCCGCC
CGCAAAGCGGTTCCCACAAGCCACGAAGTCTGGGTCGCTGCTGCCCGCCT
GCAGGAGCAGATGGGTACGTTCGAGAAGGTGAATGTGATGAAGAGAGCTG
TCCAAGCCCTCGCGAGAGAAAACGCCATGCTCAAACGGGAGGAGTGGGTA
GCGGAGGCTGAGAAGTGCGAAGAGGAAGGTGCTATTCTCACCTGTGGCGC
CATCATTCGTGAGACTCTCGGATGGGGCTTGGATGAGGATGACGATCGCA
AGGACATCTGGATGGATGACGCAAAGGCTAGTATTGCCAGGGGGAAGTAC
GAAACTGCCAGGGCTATCTATGCCTACGCGCTGCGTGTTTTCGTCAACCG
TCGTTCAATCTGGATTGCGGCAGCCGAGTTGGAGCGCAACCACGGTAGTA
AAGAAGCGCTGTGGCAAGTCCTTGAAAAGGCCGTTGAGGCGTGCCCGCAA
AGTGAGGAACTATGGCTGCAGCTTGCGAAAGAAAAGTGGCAGTCCGGCGA
GATCGACGATGCCCGGAGAGTGCTCGGCCGTGCCTTCAACCAGAACCCCA
ACAACGAGGATATCTGGCTGGCTGCTGTCAAGCTAGAGGCCGATGCCAAC
CAAACATCCGAAGCCAGAGAACTTCTTGCAACTGCTCGACGCGAAGCGGG
TACGGACCGCGTTTGGATAAAGAGCGTCGCGTTCGAGCGACAGCTCGGCA
ACATCGACGAGGCGCTCGATCTGGTGAACCAAGGACTTCAAATCTATCCC
AAGGCGGACAAACTCTGGATGATGAAGGGACAGATCTACGAAGCCCAAAA
CAAATACCCACAGGCTCGGGAAGCTTACGGGACCGGAACCAGAGCCTGCA
ACAAGTCCATCCCACTCTGGCTGTTGGCCTCAAGACTTGAAGAAAAGGCC
GGTGCGGTCGTAAAGGCTCGTTCAGTGCTCGACCGTGCCCGCCTTGCGGT
CCCCAAGAGTCCAGAGCTCTGGACCGAAAGTGTGCGCGTAGAGCGGCGAG
CAAACAACATTGCCCAAGCCAAGGTCCTAATGGCCAAGGCACTGCAAGAA
GTCCCTACCTCCGGATTACTATGGAGCGAAAGCATTTGGCACCTGGAGCC
GCGCGCGCAACGGAAAGCTCGGAGTCTGGAAGCGATCAAGAAGGCTGATA
ACGATCCGATTCTCTTTATTACCGTGGCGCGGATTTTCTGGGGCGAGCGC
CGATTGGAAAAAGCACTCACCTGGTTCGAGAAAGCCATTGTCTCGGATAG
TGATATGGGCGACGCATGGGCTTGGTACTACAAATTCTTGTTGCAGCATG
GCACAGAGGTATGTCTTTTATTCATAACAAAAAAGAATAATCTGTCTAGG
ATGTACGTGACTGACAGCAATTCCCAGGAAAAACGCGCCGATGTAATATC
CAAGTGTATTTCGACCGAGCCCAAGCACGGAGAAATCTGGCAATCCGTGG
CCAAAGACCCCGCCAACGCGCTCAAGTCGACAGAAGAGATTTTGAAGATG
GTTGCAGACCGTCTGACCTAATTGATTTCATGATGCCTTGCTTTCTTGAC
CTCGCATGTTCATCATTCCTTACGATATCCAGTTCATTGCCCTAGAGGAT
ACGTTGGCGTTTCCGGCGAAGTGAAACAGGGTTCACCAGCCAACCGCTCT
CCGCTTGGTTGGTTTGGCTACATCTTTACAAAACGATTACCACTATAAGG
AGAAACCCCTGAAAAATGCATACAGGTAATATCGGCCTAATTAGCCTTTG
CATTAAGAGCGGTGCAGTTGCAGATTAAACCAACCATACAACCAAGTGGT
CCTGCGCGCGGTGCGGGTGCTGAGACATTTCTCTTGAGAAGTCTCATGAG
GTCACTCTTTCTCTCTATCATGATCAGCTAGTAAAATGGTTTCCACCAAG
CATATGCAAGCCAAGAATGGAAGGCAAGATAATGTACAGTAAACAGCAAA
CACACACAACACGATTCTTCTTCTTCTTATTTCTCTTCCGCATGGTTAT back to topCoding sequence (CDS) from alignment at ch4:2615158..2618706+ >KJC3_005401-T1 ID=KJC3_005401-T1|Name=KJC3_005401-T1|organism=Aspergillus niger KJC3|type=CDS|length=4134bp|location=Sequence derived from alignment at ch4:2615158..2618706+ (Aspergillus niger KJC3)
ATGGGATCATCTGGGGATTCTGCGTCTGGAAGCGCTACCAACATCGATCC
AAAGGGCTACCTTACAAGTCTCACGCAGTCTGAGCTGAAAGCTGGAGAAG
TAGAAATTGGAGACATTAAGCGGGTCCGCGTTTTGTTGGAATCTGTAACG
AAAACGAATCCCAAGCATGCGCCGGGATGGATTGCGCTGGCGCGTCTAGA
AGAATTAGCCGGTAAAATCGTGACTGCCAGGAATGTAATCGCCAAGGGTT
GCGAGTTGTGCCCGAAAAGTGAAGATGCCTGGCTTGAAAACATTCGCCTT
AACGAGGGCCATAATGCCAAGGTGATTGCGGCTAATGCCATCAAGAACAA
TGACCGTTCTACAAGACTATGGATCGAAGCCATGCGATTGGAGACAGAGC
CTCGTGCGAAGAAGAACGTTCTTAGACAGGCGATCCTTCACATACCTCAG
TCTGTTACGATCTGGAAAGAAGCCGTCAACCTGGAGGACGACCCTGCCGA
TGCACGTCTGCTTCTGGCGAAGGCAGTTGAGATGATCCCCCTTTCCGTTG
AGCTCTGGCTGGCTCTGGCTCGCCTAGAATCACCGGAGAATGCACAGAAG
GTTCTCAATGCCGCCCGCAAAGCGGTTCCCACAAGCCACGAAGTCTGGGT
CGCTGCTGCCCGCCTGCAGGAGCAGATGGGTACGTTCGAGAAGGTGAATG
TGATGAAGAGAGCTGTCCAAGCCCTCGCGAGAGAAAACGCCATGCTCAAA
CGGGAGGAGTGGGTAGCGGAGGCTGAGAAGTGCGAAGAGGAAGGTGCTAT
TCTCACCTGTGGCGCCATCATTCGTGAGACTCTCGGATGGGGCTTGGATG
AGGATGACGATCGCAAGGACATCTGGATGGATGACGCAAAGGCTAGTATT
GCCAGGGGGAAGTACGAAACTGCCAGGGCTATCTATGCCTACGCGCTGCG
TGTTTTCGTCAACCGTCGTTCAATCTGGATTGCGGCAGCCGAGTTGGAGC
GCAACCACGGTAGTAAAGAAGCGCTGTGGCAAGTCCTTGAAAAGGCCGTT
GAGGCGTGCCCGCAAAGTGAGGAACTATGGCTGCAGCTTGCGAAAGAAAA
GTGGCAGTCCGGCGAGATCGACGATGCCCGGAGAGTGCTCGGCCGTGCCT
TCAACCAGAACCCCAACAACGAGGATATCTGGCTGGCTGCTGTCAAGCTA
GAGGCCGATGCCAACCAAACATCCGAAGCCAGAGAACTTCTTGCAACTGC
TCGACGCGAAGCGGGTACGGACCGCGTTTGGATAAAGAGCGTCGCGTTCG
AGCGACAGCTCGGCAACATCGACGAGGCGCTCGATCTGGTGAACCAAGGA
CTTCAAATCTATCCCAAGGCGGACAAACTCTGGATGATGAAGGGACAGAT
CTACGAAGCCCAAAACAAATACCCACAGGCTCGGGAAGCTTACGGGACCG
GAACCAGAGCCTGCAACAAGTCCATCCCACTCTGGCTGTTGGCCTCAAGA
CTTGAAGAAAAGGCCGGTGCGGTCGTAAAGGCTCGTTCAGTGCTCGACCG
TGCCCGCCTTGCGGTCCCCAAGAGTCCAGAGCTCTGGACCGAAAGTGTGC
GCGTAGAGCGGCGAGCAAACAACATTGCCCAAGCCAAGGTCCTAATGGCC
AAGGCACTGCAAGAAGTCCCTACCTCCGGATTACTATGGAGCGAAAGCAT
TTGGCACCTGGAGCCGCGCGCGCAACGGAAAGCTCGGAGTCTGGAAGCGA
TCAAGAAGGCTGATAACGATCCGATTCTCTTTATTACCGTGGCGCGGATT
TTCTGGGGCGAGCGCCGATTGGAAAAAGCACTCACCTGGTTCGAGAAAGC
CATTGTCTCGGATAGTGATATGGGCGACGCATGGGCTTGGTACTACAAAT
TCTTGTTGCAGCATGGCACAGAGGAAAAACGCGCCGATGTAATATCCAAG
TGTATTTCGACCGAGCCCAAGCACGGAGAAATCTGGCAATCCGTGGCCAA
AGACCCCGCCAACGCGCTCAAGTCGACAGAAGAGATTTTGAAGATGGTTG
CAGACCGTCTGACCTAAATGGGATCATCTGGGGATTCTGCGTCTGGAAGC
GCTACCAACATCGATCCAAAGGGCTACCTTACAAGTCTCACGCAGTCTGA
GCTGAAAGCTGGAGAAGTAGAAATTGGAGACATTAAGCGGGTCCGCGTTT
TGTTGGAATCTGTAACGAAAACGAATCCCAAGCATGCGCCGGGATGGATT
GCGCTGGCGCGTCTAGAAGAATTAGCCGGTAAAATCGTGACTGCCAGGAA
TGTAATCGCCAAGGGTTGCGAGTTGTGCCCGAAAAGTGAAGATGCCTGGC
TTGAAAACATTCGCCTTAACGAGGGCCATAATGCCAAGGTGATTGCGGCT
AATGCCATCAAGAACAATGACCGTTCTACAAGACTATGGATCGAAGCCAT
GCGATTGGAGACAGAGCCTCGTGCGAAGAAGAACGTTCTTAGACAGGCGA
TCCTTCACATACCTCAGTCTGTTACGATCTGGAAAGAAGCCGTCAACCTG
GAGGACGACCCTGCCGATGCACGTCTGCTTCTGGCGAAGGCAGTTGAGAT
GATCCCCCTTTCCGTTGAGCTCTGGCTGGCTCTGGCTCGCCTAGAATCAC
CGGAGAATGCACAGAAGGTTCTCAATGCCGCCCGCAAAGCGGTTCCCACA
AGCCACGAAGTCTGGGTCGCTGCTGCCCGCCTGCAGGAGCAGATGGGTAC
GTTCGAGAAGGTGAATGTGATGAAGAGAGCTGTCCAAGCCCTCGCGAGAG
AAAACGCCATGCTCAAACGGGAGGAGTGGGTAGCGGAGGCTGAGAAGTGC
GAAGAGGAAGGTGCTATTCTCACCTGTGGCGCCATCATTCGTGAGACTCT
CGGATGGGGCTTGGATGAGGATGACGATCGCAAGGACATCTGGATGGATG
ACGCAAAGGCTAGTATTGCCAGGGGGAAGTACGAAACTGCCAGGGCTATC
TATGCCTACGCGCTGCGTGTTTTCGTCAACCGTCGTTCAATCTGGATTGC
GGCAGCCGAGTTGGAGCGCAACCACGGTAGTAAAGAAGCGCTGTGGCAAG
TCCTTGAAAAGGCCGTTGAGGCGTGCCCGCAAAGTGAGGAACTATGGCTG
CAGCTTGCGAAAGAAAAGTGGCAGTCCGGCGAGATCGACGATGCCCGGAG
AGTGCTCGGCCGTGCCTTCAACCAGAACCCCAACAACGAGGATATCTGGC
TGGCTGCTGTCAAGCTAGAGGCCGATGCCAACCAAACATCCGAAGCCAGA
GAACTTCTTGCAACTGCTCGACGCGAAGCGGGTACGGACCGCGTTTGGAT
AAAGAGCGTCGCGTTCGAGCGACAGCTCGGCAACATCGACGAGGCGCTCG
ATCTGGTGAACCAAGGACTTCAAATCTATCCCAAGGCGGACAAACTCTGG
ATGATGAAGGGACAGATCTACGAAGCCCAAAACAAATACCCACAGGCTCG
GGAAGCTTACGGGACCGGAACCAGAGCCTGCAACAAGTCCATCCCACTCT
GGCTGTTGGCCTCAAGACTTGAAGAAAAGGCCGGTGCGGTCGTAAAGGCT
CGTTCAGTGCTCGACCGTGCCCGCCTTGCGGTCCCCAAGAGTCCAGAGCT
CTGGACCGAAAGTGTGCGCGTAGAGCGGCGAGCAAACAACATTGCCCAAG
CCAAGGTCCTAATGGCCAAGGCACTGCAAGAAGTCCCTACCTCCGGATTA
CTATGGAGCGAAAGCATTTGGCACCTGGAGCCGCGCGCGCAACGGAAAGC
TCGGAGTCTGGAAGCGATCAAGAAGGCTGATAACGATCCGATTCTCTTTA
TTACCGTGGCGCGGATTTTCTGGGGCGAGCGCCGATTGGAAAAAGCACTC
ACCTGGTTCGAGAAAGCCATTGTCTCGGATAGTGATATGGGCGACGCATG
GGCTTGGTACTACAAATTCTTGTTGCAGCATGGCACAGAGGAAAAACGCG
CCGATGTAATATCCAAGTGTATTTCGACCGAGCCCAAGCACGGAGAAATC
TGGCAATCCGTGGCCAAAGACCCCGCCAACGCGCTCAAGTCGACAGAAGA
GATTTTGAAGATGGTTGCAGACCGTCTGACCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005401-T1.utr3p1 | KJC3_005401-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013026 |
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR003107 |
| DBxref | InterPro:IPR019734 |
| DBxref | PFAM:PF14559 |
| DBxref | PFAM:PF13432 |
| DBxref | PFAM:PF13428 |
| DBxref | PFAM:PF06424 |
| Product | Pre-mRNA-processing factor 6 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2615158..2618706 + |
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