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KJC3_005427-T1, KJC3_005427-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005427-T1
Unique NameKJC3_005427-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:2689587..2690076-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005427-T1 ID=KJC3_005427-T1|Name=KJC3_005427-T1|organism=Aspergillus niger KJC3|type=mRNA|length=490bp|location=Sequence derived from alignment at ch4:2689587..2690076- (Aspergillus niger KJC3)
ATGTCTGAGACTTCTGCCGGTATGCACATCCCAGGTCTCGTTTTTCTCAT
GGCCATATACTGACAATTTCTATAGCCTGGCCCCTCGCCGATGAGGCCCT
CACCCAGAACCTCCTGGACCTTGTCCAGCAGGCCGGTCACTACCGCCAGC
TGAAGAAGGGTGCTAACGAGGGTATGTGCTTCCTCAAGAACACTCATTGT
CTGTCTGTCTGCTAACTGTCTTTGCAGCCACCAAGACTCTTAACCGTGGT
ACCTCCGAGCTCGTTATCCTCGCTGCCGACACCTCTCCCCTCGCTATCCT
CCTCCACATCCCCCTCCTTGCTGAGGACAAGAACACCCCTTATGTCTTCG
TGCCCAGCAAGCTTGCTCTCGGCCGTGCTACCGGTGTTTCCCGCCCCGTG
ATTGCGGCCAGTATCACCACCAACGAGGCCAGTGACCTCCAGGGCCAGAT
CAAGACCATCAAGGACAAGGTCGAGAGACTGATGATCTAA
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Coding sequence (CDS) from alignment at ch4:2689587..2690076-

>KJC3_005427-T1 ID=KJC3_005427-T1|Name=KJC3_005427-T1|organism=Aspergillus niger KJC3|type=CDS|length=1134bp|location=Sequence derived from alignment at ch4:2689587..2690076- (Aspergillus niger KJC3)
CCACCAAGACTCTTAACCGTGGTACCTCCGAGCTCGTTATCCTCGCTGCC
GACACCTCTCCCCTCGCTATCCTCCTCCACATCCCCCTCCTTGCTGAGGA
CAAGAACACCCCTTATGTCTTCGTGCCCAGCAAGCTTGCTCTCGGCCGTG
CTACCGGTGTTTCCCGCCCCGTGATTGCGGCCAGTATCACCACCAACGAG
GCCAGTGACCTCCAGGGCCAGATCAAGACCATCAAGGACAAGGTCGAGAG
ACTGATGATCTAACCTGGCCCCTCGCCGATGAGGCCCTCACCCAGAACCT
CCTGGACCTTGTCCAGCAGGCCGGTCACTACCGCCAGCTGAAGAAGGGTG
CTAACGAGGATGTCTGAGACTTCTGCCGCCACCAAGACTCTTAACCGTGG
TACCTCCGAGCTCGTTATCCTCGCTGCCGACACCTCTCCCCTCGCTATCC
TCCTCCACATCCCCCTCCTTGCTGAGGACAAGAACACCCCTTATGTCTTC
GTGCCCAGCAAGCTTGCTCTCGGCCGTGCTACCGGTGTTTCCCGCCCCGT
GATTGCGGCCAGTATCACCACCAACGAGGCCAGTGACCTCCAGGGCCAGA
TCAAGACCATCAAGGACAAGGTCGAGAGACTGATGATCTAACCTGGCCCC
TCGCCGATGAGGCCCTCACCCAGAACCTCCTGGACCTTGTCCAGCAGGCC
GGTCACTACCGCCAGCTGAAGAAGGGTGCTAACGAGGATGTCTGAGACTT
CTGCCGCCACCAAGACTCTTAACCGTGGTACCTCCGAGCTCGTTATCCTC
GCTGCCGACACCTCTCCCCTCGCTATCCTCCTCCACATCCCCCTCCTTGC
TGAGGACAAGAACACCCCTTATGTCTTCGTGCCCAGCAAGCTTGCTCTCG
GCCGTGCTACCGGTGTTTCCCGCCCCGTGATTGCGGCCAGTATCACCACC
AACGAGGCCAGTGACCTCCAGGGCCAGATCAAGACCATCAAGGACAAGGT
CGAGAGACTGATGATCTAACCTGGCCCCTCGCCGATGAGGCCCTCACCCA
GAACCTCCTGGACCTTGTCCAGCAGGCCGGTCACTACCGCCAGCTGAAGA
AGGGTGCTAACGAGGATGTCTGAGACTTCTGCCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNU13KJC3_005427Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005427-T1KJC3_005427-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005427-T1.cdsKJC3_005427-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005427-T1.exon3KJC3_005427-T1.exon3Aspergillus niger KJC3exon
KJC3_005427-T1.exon2KJC3_005427-T1.exon2Aspergillus niger KJC3exon
KJC3_005427-T1.exon1KJC3_005427-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
DBxrefInterPro:IPR029064
DBxrefInterPro:IPR004038
DBxrefInterPro:IPR018492
DBxrefInterPro:IPR002415
DBxrefPFAM:PF01248
ProductRNA binding protein snu13
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:2689587..2690076 -
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