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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2787188..2790046- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005454-T1 ID=KJC3_005454-T1|Name=KJC3_005454-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2859bp|location=Sequence derived from alignment at ch4:2787188..2790046- (Aspergillus niger KJC3)
GAGCTCCGTTGCAACAATAAGACTAAGGAATCTAGGTCCAACTCTCTTTC
TGCCTCCCTTTGCTCTCCACCCGTTAGCGGTGTCTGAGGAACAACTGGCT
TCTACGTTTCTTCTATAATGAATTAAATGAGCAATCTTACCACAAAGTAT
CACGCTTGGCCGATCCCATACGCGCCCGACCGGACTCGCGTTTTATCGTG
ATTTTACGGTCGGCTTCCGATAAACGACTAATGTTTCTCAATCGCCGAGT
TTGAATCAAGAACGGTCCTCACGAACAATGGCAGATGATTACGAAAGCCC
CTCCTCCCCGGAGGAGGCGCCAGTCGAGTCGCTCATTCAGGGGCGTGCGA
AGCGAAGCACAGCCGGCCTTCATATGTCAGCTCTCCTGGACGCCGCTGCC
GACGATGATCTTGCGCTCTTGTTCGAGGAAGTGGAGGATGACAACGAGTT
TGCGATGGATGTGGAGGAAGAAGGGGGAGAAGAGGATGATATGCGCTTCG
AGTCTTCCTCGGATGATGAGGATGATCAAGGACCTGAGTCTCGAGCTGAC
GACATGGAAGGGGAGCAACAACTACAGAAGGAGGAGCGACAAGAGAAGAA
AAAAAAGAGAGCGCGAGAAGACCTTCGATTCAAGATAGCCAGCAAGAAGG
TGAAAATCGATCCTACTGCTGTGTCTACAGTGCCTACTCCTCGCCCCAAG
AAGAAGTCAGAGCGTATCTCATGGATCCCCACGCCGGAAGAAGGGCCCAC
GCGATCATCCTCTCGTCGCCAGACTATGCAGAACAAGGAACTTACGCATG
CACGCCTGAAGGACAGCGAAGAGAAGCGCATCCGCCTCATTGCCACCATG
GAGGAGGCAGCTAAAAGGAAGGCCCAGTTCAAGCCGAAGGAGATGACGCA
AGCCGAGCGTCTTGCAGAAGCCGAAAGGGTGGAGAGGCATAACAGCAAGA
GTCTTAACCGATGGGAAGAAATGGAAAAGAGGAAGGCTGAAGAAAGACGT
GCGAAGATCGAGGCCCTTCAAAATCGCCGCCTTGAAGGTCCGGTTATGTC
GTACTGGAGTGGCATAGCAACCTGGGTTAATGGTCGCTTAACGCGCATTG
GCAAGGTTGATGTAACGCCAAAACCGGAGAAGGAGGATAATAATACACGC
AAGAAAAGCAAGAAGACGGACAAAGAGAATAAAATTGTGATAGAGCAAAA
CCCGACCGAGAATCCTATTGTTGTTGGTTCTGCCACGTCGCAAACAGCCC
CTCCTCCCACCCAAACTGAGGGTTCTACGCTACCACAAACATCCGGCGAC
GGAGAGCCTGCAAAACCGAACCAAAACCCTGAACAGCAGCAAACAAGCTC
TGAGCCCACTCAGACCAATGGCGCAATATCCCAAGAGAAACCCGTTGATA
CACCAGTGGAGGCACCCACAGATACGCCAAAGAAGGCACCCACGAATGAA
CCCACCGATACGCCAATGGAGGAACCCACCCCCTCTCAGGTGAACACAGA
GGCTCCTGCTGCTGCTGATCCTGTACAGCCTGCCACAACTGCAGTCAACG
ACGAGTCTGCTACAGAAGCAGTGCCAGAATCAGGTTCATCAAAAGTCGAA
GATGAAAAGAAAGAGGAAGCTACTGAGACCAAGGCTCCAGATGCAGCTCC
GGAAGAGGGCACGTCAGATGAGAAGCCAAATGTACAACAAAAAGACGACA
CTATACACGCAGTTGACGCTCAACAGCCCACGTCGCAGCAGTCTGGCGAG
AAGCCTACGCTAGAATCCGAACAGCAGCCTGACCGAGATCCACCATCTGC
GGCCGCAAAGTCCGATGACGCATCGAAGGAAACAGTCCCTGACCCAACCG
CAGCCGCTGAAGCTGTATCTGAGCCTGCTAGGATGCAGCAGGAGCTGTCT
CCTACTACAGTACCAGATGTTACTGTCGCCCCTTCGCAGACTAACCCGCA
GAAGGAGACGTCCAATCAAACACAACCGGGCCAAGAGGCTCCGGAGGTGC
ATACAGACCAGCCAGTTGTTGTGACTGAGGAAACCCCACAACCGGAGGTT
CCAGAGGCCCCTCCAGTTATCGAGCAAACAGGACGAACCCTTACGGTGTT
GGAGAACTTTGATGACAAGACCGCCCAAAGTCGCGAGTTCAGTATCTACT
TCAACGCAAAGAAACCTCCTAGGCTAACCAGTATGTAATGCACCTATACC
TCCACTGCATGCACGAACACATTGGACATGCTAACAGCAAAACAGAAATC
TCTTCATCCCTCTGCGTTATTACATCACTTCCCTCGCGCTATCGGGATCC
CGAGACCTCCCTGCCCTTCGCAAACTCACATGCTTACAATGAAATCCGAC
ATACGGTGGCACAAAAGTACAGTTGGAGCCCGATGCTGGGATGCTACGTT
GGTCCTGTCGGAGTCGCTGCGCGAGGAGTACCGGCGCGGTTCCTCGGCGG
CCCTGAAGCAAAAGAAGAAGAAGCAAAAGAGAACGGAAAGGGCGATAAAG
GCGCTAGCAACGAGGCCACCACTACTACTGACAAAACAGAAAAAAAAAAA
GAGAAAGAGAACGAAGCAAAGACTTCCACCGGAGAGGCTCCTCCATCTAC
ATCCAGCCCTTCAGCTGCAGCTGCACCCGCTTCCGCACCCACACCAACAG
CCACCCCCGTTGCAGCTACCGTGGGCGATCCAATGGATGTCGATAAATGA
TTTCCCCTCTTCCCTTCCAGGCTCGACGACCTGGAAAAAAAGACGGAGTG
GATATTAGTATTCTATTGCTCCGGCGTCTTTATGTTTCTATGCCAAAGAT
ACCCACTATTACATCTACACCATCGTCTCTAATCACATGGCTCAAAGCAT
ATCATACGT back to topCoding sequence (CDS) from alignment at ch4:2787188..2790046- >KJC3_005454-T1 ID=KJC3_005454-T1|Name=KJC3_005454-T1|organism=Aspergillus niger KJC3|type=CDS|length=4716bp|location=Sequence derived from alignment at ch4:2787188..2790046- (Aspergillus niger KJC3)
AAATCTCTTCATCCCTCTGCGTTATTACATCACTTCCCTCGCGCTATCGG
GATCCCGAGACCTCCCTGCCCTTCGCAAACTCACATGCTTACAATGAAAT
CCGACATACGGTGGCACAAAAGTACAGTTGGAGCCCGATGCTGGGATGCT
ACGTTGGTCCTGTCGGAGTCGCTGCGCGAGGAGTACCGGCGCGGTTCCTC
GGCGGCCCTGAAGCAAAAGAAGAAGAAGCAAAAGAGAACGGAAAGGGCGA
TAAAGGCGCTAGCAACGAGGCCACCACTACTACTGACAAAACAGAAAAAA
AAAAAGAGAAAGAGAACGAAGCAAAGACTTCCACCGGAGAGGCTCCTCCA
TCTACATCCAGCCCTTCAGCTGCAGCTGCACCCGCTTCCGCACCCACACC
AACAGCCACCCCCGTTGCAGCTACCGTGGGCGATCCAATGGATGTCGATA
AATGAATGGCAGATGATTACGAAAGCCCCTCCTCCCCGGAGGAGGCGCCA
GTCGAGTCGCTCATTCAGGGGCGTGCGAAGCGAAGCACAGCCGGCCTTCA
TATGTCAGCTCTCCTGGACGCCGCTGCCGACGATGATCTTGCGCTCTTGT
TCGAGGAAGTGGAGGATGACAACGAGTTTGCGATGGATGTGGAGGAAGAA
GGGGGAGAAGAGGATGATATGCGCTTCGAGTCTTCCTCGGATGATGAGGA
TGATCAAGGACCTGAGTCTCGAGCTGACGACATGGAAGGGGAGCAACAAC
TACAGAAGGAGGAGCGACAAGAGAAGAAAAAAAAGAGAGCGCGAGAAGAC
CTTCGATTCAAGATAGCCAGCAAGAAGGTGAAAATCGATCCTACTGCTGT
GTCTACAGTGCCTACTCCTCGCCCCAAGAAGAAGTCAGAGCGTATCTCAT
GGATCCCCACGCCGGAAGAAGGGCCCACGCGATCATCCTCTCGTCGCCAG
ACTATGCAGAACAAGGAACTTACGCATGCACGCCTGAAGGACAGCGAAGA
GAAGCGCATCCGCCTCATTGCCACCATGGAGGAGGCAGCTAAAAGGAAGG
CCCAGTTCAAGCCGAAGGAGATGACGCAAGCCGAGCGTCTTGCAGAAGCC
GAAAGGGTGGAGAGGCATAACAGCAAGAGTCTTAACCGATGGGAAGAAAT
GGAAAAGAGGAAGGCTGAAGAAAGACGTGCGAAGATCGAGGCCCTTCAAA
ATCGCCGCCTTGAAGGTCCGGTTATGTCGTACTGGAGTGGCATAGCAACC
TGGGTTAATGGTCGCTTAACGCGCATTGGCAAGGTTGATGTAACGCCAAA
ACCGGAGAAGGAGGATAATAATACACGCAAGAAAAGCAAGAAGACGGACA
AAGAGAATAAAATTGTGATAGAGCAAAACCCGACCGAGAATCCTATTGTT
GTTGGTTCTGCCACGTCGCAAACAGCCCCTCCTCCCACCCAAACTGAGGG
TTCTACGCTACCACAAACATCCGGCGACGGAGAGCCTGCAAAACCGAACC
AAAACCCTGAACAGCAGCAAACAAGCTCTGAGCCCACTCAGACCAATGGC
GCAATATCCCAAGAGAAACCCGTTGATACACCAGTGGAGGCACCCACAGA
TACGCCAAAGAAGGCACCCACGAATGAACCCACCGATACGCCAATGGAGG
AACCCACCCCCTCTCAGGTGAACACAGAGGCTCCTGCTGCTGCTGATCCT
GTACAGCCTGCCACAACTGCAGTCAACGACGAGTCTGCTACAGAAGCAGT
GCCAGAATCAGGTTCATCAAAAGTCGAAGATGAAAAGAAAGAGGAAGCTA
CTGAGACCAAGGCTCCAGATGCAGCTCCGGAAGAGGGCACGTCAGATGAG
AAGCCAAATGTACAACAAAAAGACGACACTATACACGCAGTTGACGCTCA
ACAGCCCACGTCGCAGCAGTCTGGCGAGAAGCCTACGCTAGAATCCGAAC
AGCAGCCTGACCGAGATCCACCATCTGCGGCCGCAAAGTCCGATGACGCA
TCGAAGGAAACAGTCCCTGACCCAACCGCAGCCGCTGAAGCTGTATCTGA
GCCTGCTAGGATGCAGCAGGAGCTGTCTCCTACTACAGTACCAGATGTTA
CTGTCGCCCCTTCGCAGACTAACCCGCAGAAGGAGACGTCCAATCAAACA
CAACCGGGCCAAGAGGCTCCGGAGGTGCATACAGACCAGCCAGTTGTTGT
GACTGAGGAAACCCCACAACCGGAGGTTCCAGAGGCCCCTCCAGTTATCG
AGCAAACAGGACGAACCCTTACGGTGTTGGAGAACTTTGATGACAAGACC
GCCCAAAGTCGCGAGTTCAGTATCTACTTCAACGCAAAGAAACCTCCTAG
GCTAACCAAAATCTCTTCATCCCTCTGCGTTATTACATCACTTCCCTCGC
GCTATCGGGATCCCGAGACCTCCCTGCCCTTCGCAAACTCACATGCTTAC
AATGAAATCCGACATACGGTGGCACAAAAGTACAGTTGGAGCCCGATGCT
GGGATGCTACGTTGGTCCTGTCGGAGTCGCTGCGCGAGGAGTACCGGCGC
GGTTCCTCGGCGGCCCTGAAGCAAAAGAAGAAGAAGCAAAAGAGAACGGA
AAGGGCGATAAAGGCGCTAGCAACGAGGCCACCACTACTACTGACAAAAC
AGAAAAAAAAAAAGAGAAAGAGAACGAAGCAAAGACTTCCACCGGAGAGG
CTCCTCCATCTACATCCAGCCCTTCAGCTGCAGCTGCACCCGCTTCCGCA
CCCACACCAACAGCCACCCCCGTTGCAGCTACCGTGGGCGATCCAATGGA
TGTCGATAAATGAATGGCAGATGATTACGAAAGCCCCTCCTCCCCGGAGG
AGGCGCCAGTCGAGTCGCTCATTCAGGGGCGTGCGAAGCGAAGCACAGCC
GGCCTTCATATGTCAGCTCTCCTGGACGCCGCTGCCGACGATGATCTTGC
GCTCTTGTTCGAGGAAGTGGAGGATGACAACGAGTTTGCGATGGATGTGG
AGGAAGAAGGGGGAGAAGAGGATGATATGCGCTTCGAGTCTTCCTCGGAT
GATGAGGATGATCAAGGACCTGAGTCTCGAGCTGACGACATGGAAGGGGA
GCAACAACTACAGAAGGAGGAGCGACAAGAGAAGAAAAAAAAGAGAGCGC
GAGAAGACCTTCGATTCAAGATAGCCAGCAAGAAGGTGAAAATCGATCCT
ACTGCTGTGTCTACAGTGCCTACTCCTCGCCCCAAGAAGAAGTCAGAGCG
TATCTCATGGATCCCCACGCCGGAAGAAGGGCCCACGCGATCATCCTCTC
GTCGCCAGACTATGCAGAACAAGGAACTTACGCATGCACGCCTGAAGGAC
AGCGAAGAGAAGCGCATCCGCCTCATTGCCACCATGGAGGAGGCAGCTAA
AAGGAAGGCCCAGTTCAAGCCGAAGGAGATGACGCAAGCCGAGCGTCTTG
CAGAAGCCGAAAGGGTGGAGAGGCATAACAGCAAGAGTCTTAACCGATGG
GAAGAAATGGAAAAGAGGAAGGCTGAAGAAAGACGTGCGAAGATCGAGGC
CCTTCAAAATCGCCGCCTTGAAGGTCCGGTTATGTCGTACTGGAGTGGCA
TAGCAACCTGGGTTAATGGTCGCTTAACGCGCATTGGCAAGGTTGATGTA
ACGCCAAAACCGGAGAAGGAGGATAATAATACACGCAAGAAAAGCAAGAA
GACGGACAAAGAGAATAAAATTGTGATAGAGCAAAACCCGACCGAGAATC
CTATTGTTGTTGGTTCTGCCACGTCGCAAACAGCCCCTCCTCCCACCCAA
ACTGAGGGTTCTACGCTACCACAAACATCCGGCGACGGAGAGCCTGCAAA
ACCGAACCAAAACCCTGAACAGCAGCAAACAAGCTCTGAGCCCACTCAGA
CCAATGGCGCAATATCCCAAGAGAAACCCGTTGATACACCAGTGGAGGCA
CCCACAGATACGCCAAAGAAGGCACCCACGAATGAACCCACCGATACGCC
AATGGAGGAACCCACCCCCTCTCAGGTGAACACAGAGGCTCCTGCTGCTG
CTGATCCTGTACAGCCTGCCACAACTGCAGTCAACGACGAGTCTGCTACA
GAAGCAGTGCCAGAATCAGGTTCATCAAAAGTCGAAGATGAAAAGAAAGA
GGAAGCTACTGAGACCAAGGCTCCAGATGCAGCTCCGGAAGAGGGCACGT
CAGATGAGAAGCCAAATGTACAACAAAAAGACGACACTATACACGCAGTT
GACGCTCAACAGCCCACGTCGCAGCAGTCTGGCGAGAAGCCTACGCTAGA
ATCCGAACAGCAGCCTGACCGAGATCCACCATCTGCGGCCGCAAAGTCCG
ATGACGCATCGAAGGAAACAGTCCCTGACCCAACCGCAGCCGCTGAAGCT
GTATCTGAGCCTGCTAGGATGCAGCAGGAGCTGTCTCCTACTACAGTACC
AGATGTTACTGTCGCCCCTTCGCAGACTAACCCGCAGAAGGAGACGTCCA
ATCAAACACAACCGGGCCAAGAGGCTCCGGAGGTGCATACAGACCAGCCA
GTTGTTGTGACTGAGGAAACCCCACAACCGGAGGTTCCAGAGGCCCCTCC
AGTTATCGAGCAAACAGGACGAACCCTTACGGTGTTGGAGAACTTTGATG
ACAAGACCGCCCAAAGTCGCGAGTTCAGTATCTACTTCAACGCAAAGAAA
CCTCCTAGGCTAACCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006338 | chromatin remodeling |
| GO:0043486 | histone exchange |
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005454-T1.utr3p1 | KJC3_005454-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005454-T1.utr5p1 | KJC3_005454-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008895 |
| DBxref | InterPro:IPR013272 |
| DBxref | PFAM:PF08265 |
| DBxref | PFAM:PF05764 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2787188..2790046 - |
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