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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2938497..2939861+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005511-T1 ID=KJC3_005511-T1|Name=KJC3_005511-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1365bp|location=Sequence derived from alignment at ch4:2938497..2939861+ (Aspergillus niger KJC3)
CACCCCGCCAGCCGATCATCTCATCCCATCACTTCCCCGCCCAAATTTTT
CTCCAACACCAACACCACCAACACCACCCATCATCTACCTAACAAACAAT
ACACAAAATACACATCTACATCGTCTAAGAAGTACCATCAAAAATGTCCA
CCCTCGACGACATCTTCGGCTCCTCCCCGCCTCCCACAACCCACCACGCT
CACCCCAACCCGCCCACCACCACCGAACCCTCCGACCTCCCCTCCCTCCG
CCGCCAACACGTCACAGCCGGCTACCGCGACGGCATCAGCGCCTCCAAAA
CCTCCCATGTCCAAGCCGGCTTTGACGCCGGCTTTCCCATCGGCGCACAA
CTCGGCATGCGCGCTGGTACTATCCTCGGTATTCTCGAGGGTGTGCTGCG
CGGTTACGACGAGAGCCAGAAAGCCGTGGTGAAGAAGCTGCCTGCGGGTC
GGAAGGGCGCCACCAGCACCAATGGCACCGCCACTCCTACTTCTACAATG
ACCGACGAGGAACGCCAAGCTAAGCGAGCAGAGATACTAGCATTGTACCA
ACAAGCCGTGAAGGAATTGGATGTGCGGAAGGTATTCGAGGGGATCAGTG
AGAAGGAAATCTCAGGGGGAGAAAAGGCCGAGGTTAGACTTGGGAGGCAG
GGTGAGGGGGCTATAGGGAAGTGGGAGGAGAAAGTGAGGGTTCCGAGGTG
GGAGGAGAATATGGATGCGTTGGAGATGAAGGATACCGTTACTGCTGAGG
GGACGGGGGTAGAGGTGGAAGAGAGCTGAGGGGGTGGTTGTGGATGGGAT
GGAATGGTACTTTTTTCTTTTCTTCCACCTCTTTAGTTTTCTGGCGGGCC
CTTGCGCCTGTCGGGATTTAACTAGAGGATCGGGGCGACGTCAGCCTAGC
CTGGCCTTTCTACAGACGACTGAGCAGAAACTTTCCTGCTTGCTTGTATG
CAGCTCTGCAGTTCTGCATACGTCGGGGTCTGGTCTCGGGATGGCTACTT
GGCTGGCTGGCTGGCTCCTCCCCCTGCTGCTGTCGGGACGGCAGGACAGA
ATGGCCGGATGGTCGAGACGGGAAGTGGCTGCAAGGTACGGAGGGGAATT
TGCATGGCGTTGTGCAGCTATGGATGGCTGGGTTGGTGGTGATGGCGGTG
GTTCGATCATAAGTACTGGATGTGCATGATTACGTGAAGTGTAGGTGTGC
TGAGCAAAAGACCGCATGGATACTGTTCATCATCATGGTGTCAGAAATGG
GTTGGAATTATGAGTGGTGTTCCCTGCCGCCACTAAGCCTATCACTCTAT
ACAAAGAAACTTCTTAAATACGATAGACAAACCTTATGTACAAGACCAAA
TTGACCATTTAGCCA back to topCoding sequence (CDS) from alignment at ch4:2938497..2939861+ >KJC3_005511-T1 ID=KJC3_005511-T1|Name=KJC3_005511-T1|organism=Aspergillus niger KJC3|type=CDS|length=636bp|location=Sequence derived from alignment at ch4:2938497..2939861+ (Aspergillus niger KJC3)
ATGTCCACCCTCGACGACATCTTCGGCTCCTCCCCGCCTCCCACAACCCA
CCACGCTCACCCCAACCCGCCCACCACCACCGAACCCTCCGACCTCCCCT
CCCTCCGCCGCCAACACGTCACAGCCGGCTACCGCGACGGCATCAGCGCC
TCCAAAACCTCCCATGTCCAAGCCGGCTTTGACGCCGGCTTTCCCATCGG
CGCACAACTCGGCATGCGCGCTGGTACTATCCTCGGTATTCTCGAGGGTG
TGCTGCGCGGTTACGACGAGAGCCAGAAAGCCGTGGTGAAGAAGCTGCCT
GCGGGTCGGAAGGGCGCCACCAGCACCAATGGCACCGCCACTCCTACTTC
TACAATGACCGACGAGGAACGCCAAGCTAAGCGAGCAGAGATACTAGCAT
TGTACCAACAAGCCGTGAAGGAATTGGATGTGCGGAAGGTATTCGAGGGG
ATCAGTGAGAAGGAAATCTCAGGGGGAGAAAAGGCCGAGGTTAGACTTGG
GAGGCAGGGTGAGGGGGCTATAGGGAAGTGGGAGGAGAAAGTGAGGGTTC
CGAGGTGGGAGGAGAATATGGATGCGTTGGAGATGAAGGATACCGTTACT
GCTGAGGGGACGGGGGTAGAGGTGGAAGAGAGCTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005511-T1.utr5p1 | KJC3_005511-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005511-T1.utr3p1 | KJC3_005511-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019191 |
| DBxref | PFAM:PF09811 |
| Product | N terminal |
| Product | Essential protein Yae1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2938497..2939861 + |
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