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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2987924..2989881- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005531-T1 ID=KJC3_005531-T1|Name=KJC3_005531-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1958bp|location=Sequence derived from alignment at ch4:2987924..2989881- (Aspergillus niger KJC3)
GTGCGACAACTAATGAAGATACGAGCCTGGCAGCTAAATATTCCAGTGGA
TCGGCCATTGAACTATGGGCTTGCTAGGAACCGTTCCAGAAGTGCTAGAA
CTTGTGCTTGTGTGGAACCACTATTCGGATTCGACTGCATACACCAACGA
TTAGTACGAGACCAATCTTGCCGCCTGATCGGAAAAGCAATATTCGTCAT
GGTATACGGCGGGAAGCCAAGTACTGGGTGCCAGAACTGTCGCAAACGAC
GCATCAAGGTATGCTGCATCGGCGAATCGAATAGCGAAATGCTAATAGTG
TAGTGCGATGAAACTCGTCCGCACTGCCGAGCATGTGTTCGGACAGGCCG
GACATGTCCTGGCTATCCCGACCCTTTTGATGTCATGTTAAGAGACCAAG
TAGCGTTCCACCGCAAGAAGCGACACACATCTAGTAAGGTCTCCACTCCG
AAGATCGAAGTGGAGTCAATTCGATCTTCACCTGCTCCGGTAGTATCCAA
CGATGCTTTGATTAGCACCAGGCCTAGCGCAGATCTCTCGCAGACGGGAT
CGGTACTGCGCACTGCGCAGCAAGAGGTCCCAAGAGGGTTGGCTCTACCA
ACTGACGATACTGTGACTGCGATGTTCTTCAATTCGTACATCTACTCGCC
TAGAGATCCGCTGATTTTGCGGGGTTTCATGGATATCTTGCCTGATGTCT
TCTGCTATACTCAGCCTGGCTCTCATTTGCATGTCGGCACTTTGGCCGTG
TCGTACTTTTCGGTGGCTGCCTGGACGGGGAATCGCTCTTTTCTCCAGTC
AGCGCAGCAGTTGTTTGTGAAGGCTGTCGCCAAGACTAGGGAAGCGTTAC
AGGGTGACATTACTCATAATGTGGATGATATTCTGATGACCATTCTTCTT
TTGTCTACTTATGAGGTATGTCAACACGCTATTTTCTGTTGGATAATAGC
TAATGTGCGGTAGGAGTTCTGCGCTATCAAAGAAAATAGACCGTCAAGAA
GGACCCATTTGCGAGGTGCTGTTGCTCTGGTGAACAGCAAACGGCCTGAG
CAGCGATCGTCGATTATATCATTGATCTTAGAGAATGCGGTCCAGGTACA
GCTGGTATGTATCGTGATCTTTTAGACAACCATATACTAACCAGGACAGA
TCAAATCATCAAAAGGTCTGGCCTATCCCACAATGCAGACGCCAAATCAA
TGGCCCCCGTCTGCACCCGTTCCACAGTCAGCATCGTCACAGCTATTAAC
GATCACCTCCGAGCTGGTCAGTCTCCGACAAGCATGGGATAGATTCAACG
AAGAAGGAACAAACCATGTCCATGACATCCAGGAGATCCTCTCACGGGCC
TACAGCCTGGACGCGAATCTAGAAGCTTGGAAATACGCACTCCCTGAACA
CTGGAAACCATTGCCTGCGGTCTATGTTCCCCAGTCCGTGCGGGAAGCCG
GCATGTACAAAAACCGCTGCGACTGCTACACCGACCTCTGGATGGCAGGG
ACATGGAACTTTTACCGGGATTCCCGGATAGTCGTCCAAAATATCATACT
TCGCTGTTTGCGGATCCTACCTGATGGTGTGATGCTGGAGCATATACAGG
AGACTATTAACCTGATTGAGACTCTTGCTCTGGATATCTGCGCCACCGTG
CCGTACATCCTTGGCAGCCAGACGATGTCAGTGCATGTTAGTGGGCAAAA
AATCGAGTATCCGGAAGCCGATGGACGGCGGGTGACGACGCCTCATTATC
CGACTGCTGCGCTTGTGGGGGGATGGATGGTATCGTCTCACTTGTCGAAT
CTAGAATTGCTGTGTCTGAGTGAGGAGATGAATACATGGATTCGGGCGCA
GAAGGAGCGAGTACTGCAGATATATACGTTTGGGGGAAACGGCAGTCAGA
TAAGCATGTAATATGTATATAGTCTATCACATAAATAATCAAATGTATAT
TTCAATTC back to topCoding sequence (CDS) from alignment at ch4:2987924..2989881- >KJC3_005531-T1 ID=KJC3_005531-T1|Name=KJC3_005531-T1|organism=Aspergillus niger KJC3|type=CDS|length=7044bp|location=Sequence derived from alignment at ch4:2987924..2989881- (Aspergillus niger KJC3)
ATCAAATCATCAAAAGGTCTGGCCTATCCCACAATGCAGACGCCAAATCA
ATGGCCCCCGTCTGCACCCGTTCCACAGTCAGCATCGTCACAGCTATTAA
CGATCACCTCCGAGCTGGTCAGTCTCCGACAAGCATGGGATAGATTCAAC
GAAGAAGGAACAAACCATGTCCATGACATCCAGGAGATCCTCTCACGGGC
CTACAGCCTGGACGCGAATCTAGAAGCTTGGAAATACGCACTCCCTGAAC
ACTGGAAACCATTGCCTGCGGTCTATGTTCCCCAGTCCGTGCGGGAAGCC
GGCATGTACAAAAACCGCTGCGACTGCTACACCGACCTCTGGATGGCAGG
GACATGGAACTTTTACCGGGATTCCCGGATAGTCGTCCAAAATATCATAC
TTCGCTGTTTGCGGATCCTACCTGATGGTGTGATGCTGGAGCATATACAG
GAGACTATTAACCTGATTGAGACTCTTGCTCTGGATATCTGCGCCACCGT
GCCGTACATCCTTGGCAGCCAGACGATGTCAGTGCATGTTAGTGGGCAAA
AAATCGAGTATCCGGAAGCCGATGGACGGCGGGTGACGACGCCTCATTAT
CCGACTGCTGCGCTTGTGGGGGGATGGATGGTATCGTCTCACTTGTCGAA
TCTAGAATTGCTGTGTCTGAGTGAGGAGATGAATACATGGATTCGGGCGC
AGAAGGAGCGAGTACTGCAGATATATACGTTTGGGGGAAACGGCAGTCAG
ATAAGCATGTAAGAGTTCTGCGCTATCAAAGAAAATAGACCGTCAAGAAG
GACCCATTTGCGAGGTGCTGTTGCTCTGGTGAACAGCAAACGGCCTGAGC
AGCGATCGTCGATTATATCATTGATCTTAGAGAATGCGGTCCAGGTACAG
CTGTGCGATGAAACTCGTCCGCACTGCCGAGCATGTGTTCGGACAGGCCG
GACATGTCCTGGCTATCCCGACCCTTTTGATGTCATGTTAAGAGACCAAG
TAGCGTTCCACCGCAAGAAGCGACACACATCTAGTAAGGTCTCCACTCCG
AAGATCGAAGTGGAGTCAATTCGATCTTCACCTGCTCCGGTAGTATCCAA
CGATGCTTTGATTAGCACCAGGCCTAGCGCAGATCTCTCGCAGACGGGAT
CGGTACTGCGCACTGCGCAGCAAGAGGTCCCAAGAGGGTTGGCTCTACCA
ACTGACGATACTGTGACTGCGATGTTCTTCAATTCGTACATCTACTCGCC
TAGAGATCCGCTGATTTTGCGGGGTTTCATGGATATCTTGCCTGATGTCT
TCTGCTATACTCAGCCTGGCTCTCATTTGCATGTCGGCACTTTGGCCGTG
TCGTACTTTTCGGTGGCTGCCTGGACGGGGAATCGCTCTTTTCTCCAGTC
AGCGCAGCAGTTGTTTGTGAAGGCTGTCGCCAAGACTAGGGAAGCGTTAC
AGGGTGACATTACTCATAATGTGGATGATATTCTGATGACCATTCTTCTT
TTGTCTACTTATGAGATGAAGATACGAGCCTGGCAGCTAAATATTCCAGT
GGATCGGCCATTGAACTATGGGCTTGCTAGGAACCGTTCCAGAAGTGCTA
GAACTTGTGCTTGTGTGGAACCACTATTCGGATTCGACTGCATACACCAA
CGATTAGTACGAGACCAATCTTGCCGCCTGATCGGAAAAGCAATATTCGT
CATGGTATACGGCGGGAAGCCAAGTACTGGGTGCCAGAACTGTCGCAAAC
GACGCATCAAGATCAAATCATCAAAAGGTCTGGCCTATCCCACAATGCAG
ACGCCAAATCAATGGCCCCCGTCTGCACCCGTTCCACAGTCAGCATCGTC
ACAGCTATTAACGATCACCTCCGAGCTGGTCAGTCTCCGACAAGCATGGG
ATAGATTCAACGAAGAAGGAACAAACCATGTCCATGACATCCAGGAGATC
CTCTCACGGGCCTACAGCCTGGACGCGAATCTAGAAGCTTGGAAATACGC
ACTCCCTGAACACTGGAAACCATTGCCTGCGGTCTATGTTCCCCAGTCCG
TGCGGGAAGCCGGCATGTACAAAAACCGCTGCGACTGCTACACCGACCTC
TGGATGGCAGGGACATGGAACTTTTACCGGGATTCCCGGATAGTCGTCCA
AAATATCATACTTCGCTGTTTGCGGATCCTACCTGATGGTGTGATGCTGG
AGCATATACAGGAGACTATTAACCTGATTGAGACTCTTGCTCTGGATATC
TGCGCCACCGTGCCGTACATCCTTGGCAGCCAGACGATGTCAGTGCATGT
TAGTGGGCAAAAAATCGAGTATCCGGAAGCCGATGGACGGCGGGTGACGA
CGCCTCATTATCCGACTGCTGCGCTTGTGGGGGGATGGATGGTATCGTCT
CACTTGTCGAATCTAGAATTGCTGTGTCTGAGTGAGGAGATGAATACATG
GATTCGGGCGCAGAAGGAGCGAGTACTGCAGATATATACGTTTGGGGGAA
ACGGCAGTCAGATAAGCATGTAAGAGTTCTGCGCTATCAAAGAAAATAGA
CCGTCAAGAAGGACCCATTTGCGAGGTGCTGTTGCTCTGGTGAACAGCAA
ACGGCCTGAGCAGCGATCGTCGATTATATCATTGATCTTAGAGAATGCGG
TCCAGGTACAGCTGTGCGATGAAACTCGTCCGCACTGCCGAGCATGTGTT
CGGACAGGCCGGACATGTCCTGGCTATCCCGACCCTTTTGATGTCATGTT
AAGAGACCAAGTAGCGTTCCACCGCAAGAAGCGACACACATCTAGTAAGG
TCTCCACTCCGAAGATCGAAGTGGAGTCAATTCGATCTTCACCTGCTCCG
GTAGTATCCAACGATGCTTTGATTAGCACCAGGCCTAGCGCAGATCTCTC
GCAGACGGGATCGGTACTGCGCACTGCGCAGCAAGAGGTCCCAAGAGGGT
TGGCTCTACCAACTGACGATACTGTGACTGCGATGTTCTTCAATTCGTAC
ATCTACTCGCCTAGAGATCCGCTGATTTTGCGGGGTTTCATGGATATCTT
GCCTGATGTCTTCTGCTATACTCAGCCTGGCTCTCATTTGCATGTCGGCA
CTTTGGCCGTGTCGTACTTTTCGGTGGCTGCCTGGACGGGGAATCGCTCT
TTTCTCCAGTCAGCGCAGCAGTTGTTTGTGAAGGCTGTCGCCAAGACTAG
GGAAGCGTTACAGGGTGACATTACTCATAATGTGGATGATATTCTGATGA
CCATTCTTCTTTTGTCTACTTATGAGATGAAGATACGAGCCTGGCAGCTA
AATATTCCAGTGGATCGGCCATTGAACTATGGGCTTGCTAGGAACCGTTC
CAGAAGTGCTAGAACTTGTGCTTGTGTGGAACCACTATTCGGATTCGACT
GCATACACCAACGATTAGTACGAGACCAATCTTGCCGCCTGATCGGAAAA
GCAATATTCGTCATGGTATACGGCGGGAAGCCAAGTACTGGGTGCCAGAA
CTGTCGCAAACGACGCATCAAGATCAAATCATCAAAAGGTCTGGCCTATC
CCACAATGCAGACGCCAAATCAATGGCCCCCGTCTGCACCCGTTCCACAG
TCAGCATCGTCACAGCTATTAACGATCACCTCCGAGCTGGTCAGTCTCCG
ACAAGCATGGGATAGATTCAACGAAGAAGGAACAAACCATGTCCATGACA
TCCAGGAGATCCTCTCACGGGCCTACAGCCTGGACGCGAATCTAGAAGCT
TGGAAATACGCACTCCCTGAACACTGGAAACCATTGCCTGCGGTCTATGT
TCCCCAGTCCGTGCGGGAAGCCGGCATGTACAAAAACCGCTGCGACTGCT
ACACCGACCTCTGGATGGCAGGGACATGGAACTTTTACCGGGATTCCCGG
ATAGTCGTCCAAAATATCATACTTCGCTGTTTGCGGATCCTACCTGATGG
TGTGATGCTGGAGCATATACAGGAGACTATTAACCTGATTGAGACTCTTG
CTCTGGATATCTGCGCCACCGTGCCGTACATCCTTGGCAGCCAGACGATG
TCAGTGCATGTTAGTGGGCAAAAAATCGAGTATCCGGAAGCCGATGGACG
GCGGGTGACGACGCCTCATTATCCGACTGCTGCGCTTGTGGGGGGATGGA
TGGTATCGTCTCACTTGTCGAATCTAGAATTGCTGTGTCTGAGTGAGGAG
ATGAATACATGGATTCGGGCGCAGAAGGAGCGAGTACTGCAGATATATAC
GTTTGGGGGAAACGGCAGTCAGATAAGCATGTAAGAGTTCTGCGCTATCA
AAGAAAATAGACCGTCAAGAAGGACCCATTTGCGAGGTGCTGTTGCTCTG
GTGAACAGCAAACGGCCTGAGCAGCGATCGTCGATTATATCATTGATCTT
AGAGAATGCGGTCCAGGTACAGCTGTGCGATGAAACTCGTCCGCACTGCC
GAGCATGTGTTCGGACAGGCCGGACATGTCCTGGCTATCCCGACCCTTTT
GATGTCATGTTAAGAGACCAAGTAGCGTTCCACCGCAAGAAGCGACACAC
ATCTAGTAAGGTCTCCACTCCGAAGATCGAAGTGGAGTCAATTCGATCTT
CACCTGCTCCGGTAGTATCCAACGATGCTTTGATTAGCACCAGGCCTAGC
GCAGATCTCTCGCAGACGGGATCGGTACTGCGCACTGCGCAGCAAGAGGT
CCCAAGAGGGTTGGCTCTACCAACTGACGATACTGTGACTGCGATGTTCT
TCAATTCGTACATCTACTCGCCTAGAGATCCGCTGATTTTGCGGGGTTTC
ATGGATATCTTGCCTGATGTCTTCTGCTATACTCAGCCTGGCTCTCATTT
GCATGTCGGCACTTTGGCCGTGTCGTACTTTTCGGTGGCTGCCTGGACGG
GGAATCGCTCTTTTCTCCAGTCAGCGCAGCAGTTGTTTGTGAAGGCTGTC
GCCAAGACTAGGGAAGCGTTACAGGGTGACATTACTCATAATGTGGATGA
TATTCTGATGACCATTCTTCTTTTGTCTACTTATGAGATGAAGATACGAG
CCTGGCAGCTAAATATTCCAGTGGATCGGCCATTGAACTATGGGCTTGCT
AGGAACCGTTCCAGAAGTGCTAGAACTTGTGCTTGTGTGGAACCACTATT
CGGATTCGACTGCATACACCAACGATTAGTACGAGACCAATCTTGCCGCC
TGATCGGAAAAGCAATATTCGTCATGGTATACGGCGGGAAGCCAAGTACT
GGGTGCCAGAACTGTCGCAAACGACGCATCAAGATCAAATCATCAAAAGG
TCTGGCCTATCCCACAATGCAGACGCCAAATCAATGGCCCCCGTCTGCAC
CCGTTCCACAGTCAGCATCGTCACAGCTATTAACGATCACCTCCGAGCTG
GTCAGTCTCCGACAAGCATGGGATAGATTCAACGAAGAAGGAACAAACCA
TGTCCATGACATCCAGGAGATCCTCTCACGGGCCTACAGCCTGGACGCGA
ATCTAGAAGCTTGGAAATACGCACTCCCTGAACACTGGAAACCATTGCCT
GCGGTCTATGTTCCCCAGTCCGTGCGGGAAGCCGGCATGTACAAAAACCG
CTGCGACTGCTACACCGACCTCTGGATGGCAGGGACATGGAACTTTTACC
GGGATTCCCGGATAGTCGTCCAAAATATCATACTTCGCTGTTTGCGGATC
CTACCTGATGGTGTGATGCTGGAGCATATACAGGAGACTATTAACCTGAT
TGAGACTCTTGCTCTGGATATCTGCGCCACCGTGCCGTACATCCTTGGCA
GCCAGACGATGTCAGTGCATGTTAGTGGGCAAAAAATCGAGTATCCGGAA
GCCGATGGACGGCGGGTGACGACGCCTCATTATCCGACTGCTGCGCTTGT
GGGGGGATGGATGGTATCGTCTCACTTGTCGAATCTAGAATTGCTGTGTC
TGAGTGAGGAGATGAATACATGGATTCGGGCGCAGAAGGAGCGAGTACTG
CAGATATATACGTTTGGGGGAAACGGCAGTCAGATAAGCATGTAAGAGTT
CTGCGCTATCAAAGAAAATAGACCGTCAAGAAGGACCCATTTGCGAGGTG
CTGTTGCTCTGGTGAACAGCAAACGGCCTGAGCAGCGATCGTCGATTATA
TCATTGATCTTAGAGAATGCGGTCCAGGTACAGCTGTGCGATGAAACTCG
TCCGCACTGCCGAGCATGTGTTCGGACAGGCCGGACATGTCCTGGCTATC
CCGACCCTTTTGATGTCATGTTAAGAGACCAAGTAGCGTTCCACCGCAAG
AAGCGACACACATCTAGTAAGGTCTCCACTCCGAAGATCGAAGTGGAGTC
AATTCGATCTTCACCTGCTCCGGTAGTATCCAACGATGCTTTGATTAGCA
CCAGGCCTAGCGCAGATCTCTCGCAGACGGGATCGGTACTGCGCACTGCG
CAGCAAGAGGTCCCAAGAGGGTTGGCTCTACCAACTGACGATACTGTGAC
TGCGATGTTCTTCAATTCGTACATCTACTCGCCTAGAGATCCGCTGATTT
TGCGGGGTTTCATGGATATCTTGCCTGATGTCTTCTGCTATACTCAGCCT
GGCTCTCATTTGCATGTCGGCACTTTGGCCGTGTCGTACTTTTCGGTGGC
TGCCTGGACGGGGAATCGCTCTTTTCTCCAGTCAGCGCAGCAGTTGTTTG
TGAAGGCTGTCGCCAAGACTAGGGAAGCGTTACAGGGTGACATTACTCAT
AATGTGGATGATATTCTGATGACCATTCTTCTTTTGTCTACTTATGAGAT
GAAGATACGAGCCTGGCAGCTAAATATTCCAGTGGATCGGCCATTGAACT
ATGGGCTTGCTAGGAACCGTTCCAGAAGTGCTAGAACTTGTGCTTGTGTG
GAACCACTATTCGGATTCGACTGCATACACCAACGATTAGTACGAGACCA
ATCTTGCCGCCTGATCGGAAAAGCAATATTCGTCATGGTATACGGCGGGA
AGCCAAGTACTGGGTGCCAGAACTGTCGCAAACGACGCATCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005531-T1.utr3p1 | KJC3_005531-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005531-T1.utr5p1 | KJC3_005531-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2987924..2989881 - |
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