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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3019139..3020652+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005542-T1 ID=KJC3_005542-T1|Name=KJC3_005542-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1514bp|location=Sequence derived from alignment at ch4:3019139..3020652+ (Aspergillus niger KJC3)
CAACGGCGAGCGAGAAATTTCGCTCAAAAGAGGGGTAATAGCAGTTGGGA
CATATATAGGGGTCGCCTGAGCAGTCAATCTTGATGGTGTATGTCACCGT
TCGATTCAACGAAAGCTCCGTCCTCTGCCAACTTCACATGTTAAACACAA
TGTCATCTCATCGGAAGGATAACATCGGCGAACTCATCGAATTCGCTCGC
TCTCATTCCCCCTTCTACCAGCGCGTTCTTGAACATGTTCCGGCAGGCGC
CAAAAGTGTTACTGACCTTCCTCTCATCGACCCCGACGAATACTGGAGAG
CGAACGCGTCCAATCCCAATGGAGTGATGACTCGGCCCCTCATTGATGGC
ACAGTCATGCGCAGTGGTGGTTCCACTGGCACTCCCAAGCAAGTTGTCAT
GACCAAACAAGAGCTGTCAACCCATGGCAAAGTCACCGCCAATGCTATGG
CTCATGGCTGTGGCTTCCTCCCTGGCGACCGCGTGGCAAACATGTCCTTC
CACGGCTCCCTATATGGGAGTTTCATGCTCTTGAATACAGCACTCCTCGA
ACTTCCTATTCCAATTGTCCACTTGCCTATTAGCGGAAACGAATCAATTG
ACATGATGGCTCATTACATGAAGACCTTTGAAGCTACTGTTCTCATTGCC
AACGTTTCAACCACACGTCGACTGGCGGAATACTTCACTTCTATTAACGA
GAGTCTTCCCAGTCTTCGGCTGATTTTGTACACGGGCGAATGCTTTACCA
AGGAGCTCCGTCCGGTTTACCGTGCAGCCTTCCCGAACGCCACCATTTAC
GTCCGCGAATACGGTGGTATCGATTTTGGACACGTGGGCATTCCAGCGCA
GCCATTCAAGCACGAAGATGATGACATCAAACCAGTCTACAAAGTCTTGG
CGCCCTTGGTCATCTTTGAAATCTTGGATGAGAATGGCGATCCAATTACT
ACACCCGGAGTTAGGGGGAACGTGGTGATCACTAGCCTGTTGAAGAGGCA
GCAACCTTTGCTTCGCTACCCTGTTGGTGACATTGCTTCTTGGGTTGATT
ACGATGCGGAAACCTTCTACGTCCATGGCCGAGATGCTGTCAGCATAAAA
ATCGCTACCACACATCTACCTGTCGCGTATCTTAGAGAATTGATCGTGAG
GGTCCTTGGCCAAGGAAAGGCATCAGGAAGCCAGTTCGTTGTCCGGCTTC
TGAAGGAGACACACGAACAGGCGCTTGTCTTGAGGATCGTCGCGCCAGAG
CCAGAGAACACATCCGACCTAGTGACTGCTTTTGAAGAGATATTATGTGA
GGAGAGCCCTACCTGGAAGAAGAACAGGAAAGTTAAAAACATCGCCCCGC
TGCAGATTGAGTGGATCGAGGGCAAGGATTTGATTACGAATGCCGGCAGC
GGGAAGTTACGCGACATTGTTGATGAGCGGTTTTCGAATGGGGTATGAAA
CGTCTACGTACAATTGTCATACTCTGCCAAGAGTGAGGGGGTTAGACCGC
AGCATGACCTAGCG back to topCoding sequence (CDS) from alignment at ch4:3019139..3020652+ >KJC3_005542-T1 ID=KJC3_005542-T1|Name=KJC3_005542-T1|organism=Aspergillus niger KJC3|type=CDS|length=1365bp|location=Sequence derived from alignment at ch4:3019139..3020652+ (Aspergillus niger KJC3)
ATGGTGTATGTCACCGTTCGATTCAACGAAAGCTCCGTCCTCTGCCAACT
TCACATGTTAAACACAATGTCATCTCATCGGAAGGATAACATCGGCGAAC
TCATCGAATTCGCTCGCTCTCATTCCCCCTTCTACCAGCGCGTTCTTGAA
CATGTTCCGGCAGGCGCCAAAAGTGTTACTGACCTTCCTCTCATCGACCC
CGACGAATACTGGAGAGCGAACGCGTCCAATCCCAATGGAGTGATGACTC
GGCCCCTCATTGATGGCACAGTCATGCGCAGTGGTGGTTCCACTGGCACT
CCCAAGCAAGTTGTCATGACCAAACAAGAGCTGTCAACCCATGGCAAAGT
CACCGCCAATGCTATGGCTCATGGCTGTGGCTTCCTCCCTGGCGACCGCG
TGGCAAACATGTCCTTCCACGGCTCCCTATATGGGAGTTTCATGCTCTTG
AATACAGCACTCCTCGAACTTCCTATTCCAATTGTCCACTTGCCTATTAG
CGGAAACGAATCAATTGACATGATGGCTCATTACATGAAGACCTTTGAAG
CTACTGTTCTCATTGCCAACGTTTCAACCACACGTCGACTGGCGGAATAC
TTCACTTCTATTAACGAGAGTCTTCCCAGTCTTCGGCTGATTTTGTACAC
GGGCGAATGCTTTACCAAGGAGCTCCGTCCGGTTTACCGTGCAGCCTTCC
CGAACGCCACCATTTACGTCCGCGAATACGGTGGTATCGATTTTGGACAC
GTGGGCATTCCAGCGCAGCCATTCAAGCACGAAGATGATGACATCAAACC
AGTCTACAAAGTCTTGGCGCCCTTGGTCATCTTTGAAATCTTGGATGAGA
ATGGCGATCCAATTACTACACCCGGAGTTAGGGGGAACGTGGTGATCACT
AGCCTGTTGAAGAGGCAGCAACCTTTGCTTCGCTACCCTGTTGGTGACAT
TGCTTCTTGGGTTGATTACGATGCGGAAACCTTCTACGTCCATGGCCGAG
ATGCTGTCAGCATAAAAATCGCTACCACACATCTACCTGTCGCGTATCTT
AGAGAATTGATCGTGAGGGTCCTTGGCCAAGGAAAGGCATCAGGAAGCCA
GTTCGTTGTCCGGCTTCTGAAGGAGACACACGAACAGGCGCTTGTCTTGA
GGATCGTCGCGCCAGAGCCAGAGAACACATCCGACCTAGTGACTGCTTTT
GAAGAGATATTATGTGAGGAGAGCCCTACCTGGAAGAAGAACAGGAAAGT
TAAAAACATCGCCCCGCTGCAGATTGAGTGGATCGAGGGCAAGGATTTGA
TTACGAATGCCGGCAGCGGGAAGTTACGCGACATTGTTGATGAGCGGTTT
TCGAATGGGGTATGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005542-T1.utr5p1 | KJC3_005542-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005542-T1.utr3p1 | KJC3_005542-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020845 |
| DBxref | InterPro:IPR042099 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3019139..3020652 + |
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