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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3048290..3049648- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005550-T1 ID=KJC3_005550-T1|Name=KJC3_005550-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1359bp|location=Sequence derived from alignment at ch4:3048290..3049648- (Aspergillus niger KJC3)
CTCAATCCCAAGGTCCCTCTCTTTCTTTGACCCTCTTTCTCTCTCGCGAT
ATTTAACAGCTTTAATGTCAACGGCTGTCACTCACTAGCATACCGCTGAA
ATATGGCTCCCGCTACTGGCACTACCTCCCGTCCTTGGGCCGATGGCCCT
TGGCCGTTGGTCGAAACACCGTCCAAAACACAGGATATTGTAAGTAGTAC
CTCGGTCACGTCCGCCCCCAAATCTCCTATTCTGGTGCCATCTGGAAAGG
CGGAAAAATTGACATCACAAAAGCAAAGTTAACAATCAACAGTCCAAACA
TGAGGCTCTCTACATCGCCAATGAGATGGCCTTCGCCCATAACGCTATGC
TTCGGGGCCTAAACGCCCTCTATCTGCAAGCTGAGCAGATAACCGAATCA
CAAGACATCGCCGATTACCTAGTCTTCCTCCGCAGCTGGGCCGGCTGGGT
ATCCCACCACCACACCTTGGAAGAAGAACAGATGTTTCCTCAATTCGAAG
GGGTGATGAAGAAGCCCAATTTCCTCGAAGGAAACGTTAACGAGCACCAC
GCCTTCCAACCCATCCTGAAGCAGCTTCTCGCGTACGGGACTGACACCAA
GCCCGCTGAATACAAAGCCTCGACCGTGCGCAGCTTAATCGAGCAGATGG
CGCCTAGTTTTCGCGAGCATCTGGCCAATGAAATCACCAGCCTCATGAGC
ATGGAACCTTATGACGGGCCTGCTTTGCTCAAGGTTTACAAAGAATGTGA
AGCTGAAGCGGGCAAACAGGATAAGGTGAGTCACTTTATCCACTGTATCT
GGTAAGGAAGTACTTTGTTAACCAATAACAAAAACCATAAATAGAATGTT
GTCCCGCCCATGGTTCTCGGCCTCCGTGACATAACCTTCGAGGGTGGAAA
CCAGTGGCCCGCCATGCCACCCTTCTCCACTCATTTTGTGCATTATCTGT
TCGCACGGAAGCATGCTGGTGCTTGGCGTTTCCTGCCTTCTGATACTTGG
GGTAATCCGCGCCCGTTGGCATTTGGCAAGCCCTAAATACTGGAGAGATA
CTGCGGGGAACGAACGGAGTTCAGTGGATGAGTTCGATAATGATCAGCGG
GATCGGCAATCTCTGTCTTTCAATACAAGTCTCGGCTTTATGTATGACCA
CGTCCATGGTGCAGTCACTCATTCGCAGCGCTAGACTTGGCTGCTGTATG
GAGTATTAGGCCTTTTGTCTGTAGAAAATATCGTGTTTGGAGTGATAGCA
GACCGCACTGCCATTGATACGTGAATTGAGCAATTGATTGCTTTGATTAG
CCACCAAACACTACTGGGTGTGTTGATTAGACATCAAACTTCCGGGAGCT
AAACTAGTC back to topCoding sequence (CDS) from alignment at ch4:3048290..3049648- >KJC3_005550-T1 ID=KJC3_005550-T1|Name=KJC3_005550-T1|organism=Aspergillus niger KJC3|type=CDS|length=2286bp|location=Sequence derived from alignment at ch4:3048290..3049648- (Aspergillus niger KJC3)
AATGTTGTCCCGCCCATGGTTCTCGGCCTCCGTGACATAACCTTCGAGGG
TGGAAACCAGTGGCCCGCCATGCCACCCTTCTCCACTCATTTTGTGCATT
ATCTGTTCGCACGGAAGCATGCTGGTGCTTGGCGTTTCCTGCCTTCTGAT
ACTTGGGGTAATCCGCGCCCGTTGGCATTTGGCAAGCCCTAATCCAAACA
TGAGGCTCTCTACATCGCCAATGAGATGGCCTTCGCCCATAACGCTATGC
TTCGGGGCCTAAACGCCCTCTATCTGCAAGCTGAGCAGATAACCGAATCA
CAAGACATCGCCGATTACCTAGTCTTCCTCCGCAGCTGGGCCGGCTGGGT
ATCCCACCACCACACCTTGGAAGAAGAACAGATGTTTCCTCAATTCGAAG
GGGTGATGAAGAAGCCCAATTTCCTCGAAGGAAACGTTAACGAGCACCAC
GCCTTCCAACCCATCCTGAAGCAGCTTCTCGCGTACGGGACTGACACCAA
GCCCGCTGAATACAAAGCCTCGACCGTGCGCAGCTTAATCGAGCAGATGG
CGCCTAGTTTTCGCGAGCATCTGGCCAATGAAATCACCAGCCTCATGAGC
ATGGAACCTTATGACGGGCCTGCTTTGCTCAAGGTTTACAAAGAATGTGA
AGCTGAAGCGGGCAAACAGGATAAGATGGCTCCCGCTACTGGCACTACCT
CCCGTCCTTGGGCCGATGGCCCTTGGCCGTTGGTCGAAACACCGTCCAAA
ACACAGGATATTAATGTTGTCCCGCCCATGGTTCTCGGCCTCCGTGACAT
AACCTTCGAGGGTGGAAACCAGTGGCCCGCCATGCCACCCTTCTCCACTC
ATTTTGTGCATTATCTGTTCGCACGGAAGCATGCTGGTGCTTGGCGTTTC
CTGCCTTCTGATACTTGGGGTAATCCGCGCCCGTTGGCATTTGGCAAGCC
CTAATCCAAACATGAGGCTCTCTACATCGCCAATGAGATGGCCTTCGCCC
ATAACGCTATGCTTCGGGGCCTAAACGCCCTCTATCTGCAAGCTGAGCAG
ATAACCGAATCACAAGACATCGCCGATTACCTAGTCTTCCTCCGCAGCTG
GGCCGGCTGGGTATCCCACCACCACACCTTGGAAGAAGAACAGATGTTTC
CTCAATTCGAAGGGGTGATGAAGAAGCCCAATTTCCTCGAAGGAAACGTT
AACGAGCACCACGCCTTCCAACCCATCCTGAAGCAGCTTCTCGCGTACGG
GACTGACACCAAGCCCGCTGAATACAAAGCCTCGACCGTGCGCAGCTTAA
TCGAGCAGATGGCGCCTAGTTTTCGCGAGCATCTGGCCAATGAAATCACC
AGCCTCATGAGCATGGAACCTTATGACGGGCCTGCTTTGCTCAAGGTTTA
CAAAGAATGTGAAGCTGAAGCGGGCAAACAGGATAAGATGGCTCCCGCTA
CTGGCACTACCTCCCGTCCTTGGGCCGATGGCCCTTGGCCGTTGGTCGAA
ACACCGTCCAAAACACAGGATATTAATGTTGTCCCGCCCATGGTTCTCGG
CCTCCGTGACATAACCTTCGAGGGTGGAAACCAGTGGCCCGCCATGCCAC
CCTTCTCCACTCATTTTGTGCATTATCTGTTCGCACGGAAGCATGCTGGT
GCTTGGCGTTTCCTGCCTTCTGATACTTGGGGTAATCCGCGCCCGTTGGC
ATTTGGCAAGCCCTAATCCAAACATGAGGCTCTCTACATCGCCAATGAGA
TGGCCTTCGCCCATAACGCTATGCTTCGGGGCCTAAACGCCCTCTATCTG
CAAGCTGAGCAGATAACCGAATCACAAGACATCGCCGATTACCTAGTCTT
CCTCCGCAGCTGGGCCGGCTGGGTATCCCACCACCACACCTTGGAAGAAG
AACAGATGTTTCCTCAATTCGAAGGGGTGATGAAGAAGCCCAATTTCCTC
GAAGGAAACGTTAACGAGCACCACGCCTTCCAACCCATCCTGAAGCAGCT
TCTCGCGTACGGGACTGACACCAAGCCCGCTGAATACAAAGCCTCGACCG
TGCGCAGCTTAATCGAGCAGATGGCGCCTAGTTTTCGCGAGCATCTGGCC
AATGAAATCACCAGCCTCATGAGCATGGAACCTTATGACGGGCCTGCTTT
GCTCAAGGTTTACAAAGAATGTGAAGCTGAAGCGGGCAAACAGGATAAGA
TGGCTCCCGCTACTGGCACTACCTCCCGTCCTTGGGCCGATGGCCCTTGG
CCGTTGGTCGAAACACCGTCCAAAACACAGGATATT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005550-T1.utr3p1 | KJC3_005550-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005550-T1.utr5p1 | KJC3_005550-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012312 |
| DBxref | PFAM:PF01814 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3048290..3049648 - |
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