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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3053240..3055539- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005552-T1 ID=KJC3_005552-T1|Name=KJC3_005552-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2300bp|location=Sequence derived from alignment at ch4:3053240..3055539- (Aspergillus niger KJC3)
CGTTTTCCCTCGGTTTCTGCTTCCTTGACATCCTCTTCTCGCTATTGTCA
CGCCATTGACTTCACTGTCCTCTTACACGTCCCCGCCATGACAACGATTA
TACCTGTCTCCTTGTTCTGATGGCATCGGCCACCGTTCCCCGCGCCTGGC
GCTCCCTCCCCTCCCAGTTTGCCCGCCCGCGCGTCCATCTTTCCCCTCGT
GCTCCCCGTCAGCCTCTCTTGCAACTCCGTCAATATGTCCAAGCAGGCCA
TTACCAGCCTTTCGTTCCCCCATCGCCAGCCTCCCTAGGCAAACCCACCA
AGGCCAAGACCTACGATCGCACCCGTAAATGGCTTCGTCGGCTGGTCTAC
CTTTCGCTAGCCACTGGGACCGTCTACGTCCTCGACACTCAATTCTACGC
CTCGTCTCTCACACGCACAGCTCGAACCTTCAGCTTGGGCCTCCTGGTAG
CCCTGGATTACAAGATAAACTTCCGTCCCAACCCGCCGCTGGCCAGAGAC
ATCAATGCCGTACACACCCGCAATGCTGAGCGTCTGTCCGACCTCCTGCG
TCACAATGGCGGTCTGTACCTGAAAATCGGCCAAGCCATCGCTATGCAGT
CCGCCATCCTGCCCCCGGAATTTCAGAAAATGTTCTCGCGCATGTTCGAT
GACGCCCCTCAGAACGACTGGAAAGATGTCGACAAGGTCATCCGCGAGGA
CTTTGGCCGCTCGGCTGAGGAGGTTTTTGGCGTCTCCTTCACGGGTGAGC
CCGGAAAGGGTGTTATGGAGCGGACTGCGCGCGCGAGTGCCAGTGTAGCA
CAGGTACATTGGGCGCGTCTTCCGGATGGTCGTGAGGTGGCAATCAAGAT
CCAGAAACGTGAAATTGCTCAACAGCTGAAATGGGATCTGTGGGCTTTCA
AGTAAGCTCCCGCCCCGCACCCAGCATTGCACACAAAATGCTAATAAGAA
CAGAGTCGTTGCCTGGATCTATAGCCGCACCTTTGATATTCCGTTCTACA
GCCTGGTTCCTTATGTGTCGGAGCGTCTCTCCCTTGAGACGGACTTTGAA
AATGAGGCCGACAACTCCGAGAACATGGCGCGTTTGGTCGCCGGAGAGCC
CCGTCTCCGCGGCCGGGTCTACATTCCCAAGGTCCACCGCGAGCTCAGCT
CTAAGCGCGTCATGACCGCCGAGTGGATCGAGGGTGTTCGCCTCTGGGAT
AAGGACTCCATCACGCGGACCTGGCGTGGTGGCTGGCGTAGCGGCACCCC
AGGCTGCCATGGCACGCCTCTCGACGCGCGCAATGCCGAGGATCCTGTCG
CCAAAGTGGCCCGCAACCCGAGCCTAACCACCAAGATTAAGCCCGAGCGC
GATCACTGGCGCGGCGGGTACGCTCGCGCTGGTCTAGGCCTATCACTTAA
GGAAGTCATGACTACTATGGTGGACCTCTTCTCCGCACAGATGTTCCTCT
GGGGTATAGTCCACTGTGACCCGCACCCAGGCAACATCTTTATCCGCCGG
ACTCCTTCCGGTCACCCAGAGCTTGTCCTTATCGACCACGGACTGTACAT
TCACATGGACACCGAATTCCGACACCAGTACGCCCGCTTTTGGAAAGCTC
TCCTCACCTTCGACAACACCACCCTTAACTCTATCGTCCGCGGCTGGGGC
GTCCAGAATGCTGACCTCTTTGCCTCTGCCACCCTAATGCGCCCCTACCG
CGGCGGCGATCTCTCGACGCATCGCTCCTTCGAAGGACTCAGCAAATCCG
AGCGTGCCACGCGCCACTACGAAATGCAGCAAGCCGCCCGCAAAGCCATT
CGCGACATCCTCGGTGACGAATCCAAATGGCCCCGCCCACTGATCTTCAT
TGGCCGCAACCTTCGCATCGTGCAGGCAAACAACCAGTTCCTGGGCTCGC
CCGTCAACCGTATTAAGATCACAGGCACTTGGGCGTCCCGCGCGCTAGTT
GAGTCTCCGGACTTGTCGGCGTCGGAGAGACTGAGAAACTTCGGTCGCCA
CCTGTTGTTCCGCGTGGTCCTGTTCAGCACAGACTTGTTCTTCTGGTTTA
CGAAGGTGCGGCAGTTCTTGAGACTTGGTGGAGGTATGGAGGATAGCATT
GAGGCGCAGATGCAGGGGATGGCAAAGGATATGGGAGTGGAGTTGAGTCA
GAATGTGTTCGAGGGATAAACAGGCCTGAGATGGCTAGTTGAGCCTTGTT
GGGGCTTGGACTGTATAAAGGGATATAGATGTATATGTACTTCTCCTCTA
TGGTATGCTCTATATAAAAGCAATAGAGAACACTCCGCTGTTATTATTGC
back to topCoding sequence (CDS) from alignment at ch4:3053240..3055539- >KJC3_005552-T1 ID=KJC3_005552-T1|Name=KJC3_005552-T1|organism=Aspergillus niger KJC3|type=CDS|length=3996bp|location=Sequence derived from alignment at ch4:3053240..3055539- (Aspergillus niger KJC3)
AGTCGTTGCCTGGATCTATAGCCGCACCTTTGATATTCCGTTCTACAGCC
TGGTTCCTTATGTGTCGGAGCGTCTCTCCCTTGAGACGGACTTTGAAAAT
GAGGCCGACAACTCCGAGAACATGGCGCGTTTGGTCGCCGGAGAGCCCCG
TCTCCGCGGCCGGGTCTACATTCCCAAGGTCCACCGCGAGCTCAGCTCTA
AGCGCGTCATGACCGCCGAGTGGATCGAGGGTGTTCGCCTCTGGGATAAG
GACTCCATCACGCGGACCTGGCGTGGTGGCTGGCGTAGCGGCACCCCAGG
CTGCCATGGCACGCCTCTCGACGCGCGCAATGCCGAGGATCCTGTCGCCA
AAGTGGCCCGCAACCCGAGCCTAACCACCAAGATTAAGCCCGAGCGCGAT
CACTGGCGCGGCGGGTACGCTCGCGCTGGTCTAGGCCTATCACTTAAGGA
AGTCATGACTACTATGGTGGACCTCTTCTCCGCACAGATGTTCCTCTGGG
GTATAGTCCACTGTGACCCGCACCCAGGCAACATCTTTATCCGCCGGACT
CCTTCCGGTCACCCAGAGCTTGTCCTTATCGACCACGGACTGTACATTCA
CATGGACACCGAATTCCGACACCAGTACGCCCGCTTTTGGAAAGCTCTCC
TCACCTTCGACAACACCACCCTTAACTCTATCGTCCGCGGCTGGGGCGTC
CAGAATGCTGACCTCTTTGCCTCTGCCACCCTAATGCGCCCCTACCGCGG
CGGCGATCTCTCGACGCATCGCTCCTTCGAAGGACTCAGCAAATCCGAGC
GTGCCACGCGCCACTACGAAATGCAGCAAGCCGCCCGCAAAGCCATTCGC
GACATCCTCGGTGACGAATCCAAATGGCCCCGCCCACTGATCTTCATTGG
CCGCAACCTTCGCATCGTGCAGGCAAACAACCAGTTCCTGGGCTCGCCCG
TCAACCGTATTAAGATCACAGGCACTTGGGCGTCCCGCGCGCTAGTTGAG
TCTCCGGACTTGTCGGCGTCGGAGAGACTGAGAAACTTCGGTCGCCACCT
GTTGTTCCGCGTGGTCCTGTTCAGCACAGACTTGTTCTTCTGGTTTACGA
AGGTGCGGCAGTTCTTGAGACTTGGTGGAGGTATGGAGGATAGCATTGAG
GCGCAGATGCAGGGGATGGCAAAGGATATGGGAGTGGAGTTGAGTCAGAA
TGTGTTCGAGGGATAAATGGCATCGGCCACCGTTCCCCGCGCCTGGCGCT
CCCTCCCCTCCCAGTTTGCCCGCCCGCGCGTCCATCTTTCCCCTCGTGCT
CCCCGTCAGCCTCTCTTGCAACTCCGTCAATATGTCCAAGCAGGCCATTA
CCAGCCTTTCGTTCCCCCATCGCCAGCCTCCCTAGGCAAACCCACCAAGG
CCAAGACCTACGATCGCACCCGTAAATGGCTTCGTCGGCTGGTCTACCTT
TCGCTAGCCACTGGGACCGTCTACGTCCTCGACACTCAATTCTACGCCTC
GTCTCTCACACGCACAGCTCGAACCTTCAGCTTGGGCCTCCTGGTAGCCC
TGGATTACAAGATAAACTTCCGTCCCAACCCGCCGCTGGCCAGAGACATC
AATGCCGTACACACCCGCAATGCTGAGCGTCTGTCCGACCTCCTGCGTCA
CAATGGCGGTCTGTACCTGAAAATCGGCCAAGCCATCGCTATGCAGTCCG
CCATCCTGCCCCCGGAATTTCAGAAAATGTTCTCGCGCATGTTCGATGAC
GCCCCTCAGAACGACTGGAAAGATGTCGACAAGGTCATCCGCGAGGACTT
TGGCCGCTCGGCTGAGGAGGTTTTTGGCGTCTCCTTCACGGGTGAGCCCG
GAAAGGGTGTTATGGAGCGGACTGCGCGCGCGAGTGCCAGTGTAGCACAG
GTACATTGGGCGCGTCTTCCGGATGGTCGTGAGGTGGCAATCAAGATCCA
GAAACGTGAAATTGCTCAACAGCTGAAATGGGATCTGTGGGCTTTCAAAG
TCGTTGCCTGGATCTATAGCCGCACCTTTGATATTCCGTTCTACAGCCTG
GTTCCTTATGTGTCGGAGCGTCTCTCCCTTGAGACGGACTTTGAAAATGA
GGCCGACAACTCCGAGAACATGGCGCGTTTGGTCGCCGGAGAGCCCCGTC
TCCGCGGCCGGGTCTACATTCCCAAGGTCCACCGCGAGCTCAGCTCTAAG
CGCGTCATGACCGCCGAGTGGATCGAGGGTGTTCGCCTCTGGGATAAGGA
CTCCATCACGCGGACCTGGCGTGGTGGCTGGCGTAGCGGCACCCCAGGCT
GCCATGGCACGCCTCTCGACGCGCGCAATGCCGAGGATCCTGTCGCCAAA
GTGGCCCGCAACCCGAGCCTAACCACCAAGATTAAGCCCGAGCGCGATCA
CTGGCGCGGCGGGTACGCTCGCGCTGGTCTAGGCCTATCACTTAAGGAAG
TCATGACTACTATGGTGGACCTCTTCTCCGCACAGATGTTCCTCTGGGGT
ATAGTCCACTGTGACCCGCACCCAGGCAACATCTTTATCCGCCGGACTCC
TTCCGGTCACCCAGAGCTTGTCCTTATCGACCACGGACTGTACATTCACA
TGGACACCGAATTCCGACACCAGTACGCCCGCTTTTGGAAAGCTCTCCTC
ACCTTCGACAACACCACCCTTAACTCTATCGTCCGCGGCTGGGGCGTCCA
GAATGCTGACCTCTTTGCCTCTGCCACCCTAATGCGCCCCTACCGCGGCG
GCGATCTCTCGACGCATCGCTCCTTCGAAGGACTCAGCAAATCCGAGCGT
GCCACGCGCCACTACGAAATGCAGCAAGCCGCCCGCAAAGCCATTCGCGA
CATCCTCGGTGACGAATCCAAATGGCCCCGCCCACTGATCTTCATTGGCC
GCAACCTTCGCATCGTGCAGGCAAACAACCAGTTCCTGGGCTCGCCCGTC
AACCGTATTAAGATCACAGGCACTTGGGCGTCCCGCGCGCTAGTTGAGTC
TCCGGACTTGTCGGCGTCGGAGAGACTGAGAAACTTCGGTCGCCACCTGT
TGTTCCGCGTGGTCCTGTTCAGCACAGACTTGTTCTTCTGGTTTACGAAG
GTGCGGCAGTTCTTGAGACTTGGTGGAGGTATGGAGGATAGCATTGAGGC
GCAGATGCAGGGGATGGCAAAGGATATGGGAGTGGAGTTGAGTCAGAATG
TGTTCGAGGGATAAATGGCATCGGCCACCGTTCCCCGCGCCTGGCGCTCC
CTCCCCTCCCAGTTTGCCCGCCCGCGCGTCCATCTTTCCCCTCGTGCTCC
CCGTCAGCCTCTCTTGCAACTCCGTCAATATGTCCAAGCAGGCCATTACC
AGCCTTTCGTTCCCCCATCGCCAGCCTCCCTAGGCAAACCCACCAAGGCC
AAGACCTACGATCGCACCCGTAAATGGCTTCGTCGGCTGGTCTACCTTTC
GCTAGCCACTGGGACCGTCTACGTCCTCGACACTCAATTCTACGCCTCGT
CTCTCACACGCACAGCTCGAACCTTCAGCTTGGGCCTCCTGGTAGCCCTG
GATTACAAGATAAACTTCCGTCCCAACCCGCCGCTGGCCAGAGACATCAA
TGCCGTACACACCCGCAATGCTGAGCGTCTGTCCGACCTCCTGCGTCACA
ATGGCGGTCTGTACCTGAAAATCGGCCAAGCCATCGCTATGCAGTCCGCC
ATCCTGCCCCCGGAATTTCAGAAAATGTTCTCGCGCATGTTCGATGACGC
CCCTCAGAACGACTGGAAAGATGTCGACAAGGTCATCCGCGAGGACTTTG
GCCGCTCGGCTGAGGAGGTTTTTGGCGTCTCCTTCACGGGTGAGCCCGGA
AAGGGTGTTATGGAGCGGACTGCGCGCGCGAGTGCCAGTGTAGCACAGGT
ACATTGGGCGCGTCTTCCGGATGGTCGTGAGGTGGCAATCAAGATCCAGA
AACGTGAAATTGCTCAACAGCTGAAATGGGATCTGTGGGCTTTCAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005552-T1.utr3p1 | KJC3_005552-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005552-T1.utr5p1 | KJC3_005552-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011009 |
| DBxref | InterPro:IPR004147 |
| DBxref | PFAM:PF03109 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| ch4 | supercontig | ch4:3053240..3055539 - |
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