You are here

Home

KJC3_005555-T1, KJC3_005555-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005555-T1
Unique NameKJC3_005555-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:3062482..3063897+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005555-T1 ID=KJC3_005555-T1|Name=KJC3_005555-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1416bp|location=Sequence derived from alignment at ch4:3062482..3063897+ (Aspergillus niger KJC3)
AGCAGCAAATTCGTGATAGCCTCAGATCCTCGCATGGGCAATAGTTTGCG
CGCCAACTCCACCTGCCATGCGGATCCTCGTGAACTTGCTCCCACCGTTC
TTGGGCCTTGCATTTCCGCATTCTAATCCCCGATTTTTATCGGTCTGACC
GTCGTTTCCCAACATGGAGGAAAGGAGTATAAGGAGGGCCTACCCTCGTG
CTTGAGGTCCACCAATTCACCAACCTTTCACCTTCACCCAGATCTCACTC
CCCTATTAGAAGTCCATAGCCTGTCAATCATCATATGTCCTTTCCCCGTG
GCCATGAACACGAACATGCATATGAACCTATCTCCCTCCGGAAAAGACTC
AAGGGCAACTTCACCTCCCTACGTCGAATTTCACGATCCTTTCTCCGCCG
CATCTCTGGCATATCAACCTCAAAGTAAGTCCACTGATAAGTCATTCTAT
CGCCGTGAAGCCATGCCAACCCCTTCCGCAGAACCTCTTTGTCTTAACAT
GGACACTGAAACCAGTCCTGGTAGACCTGAGCCTCCGGCCTTAGCTGTTC
CCATGACACCATCATCTCCAAGCTGGCCTGTCCACCCAGAACCTTGTCAA
ATTCAGGGTCAAACCTTTATGCGCACAGGCACGGAAGAGGTTCCCGAGCC
TACCTCGGACCTTTGTCCGGACCTCCTTGACTCCTGGTACCCGAGATACC
TGGCGTGCACGCAGTTCTTTGTTTCCTATGCGCAGCATACCCCGACAGTG
CAGTCGCTGGCCGCATTTCTCAACATTCGACTTCCTTGCCAGCAGTCAGG
GGCCCAAACAACCCATCCGTCATTACGCGCTTACATTCGGCGCCTCATTG
TAACAGCACAGGATAGTCCTGCTGTACTGAGCGCGTTCTTCGGAGAAGAC
TGGGTCGGGGGAGTGGGGAGCATGATCAAGCAAGAGCGGGTGAACTACTT
GTTTACGGCAAAGAGCGGCGGGTGGGCGTCGACAAAGGCGGCGTATGACA
TTCTGCCGGACGAACAAACGCCATTTTTGCGGCCATTGCGAGCAGCAACA
GAGGAAGAATTACGCGAGGCGGAAGCGCGCTGGAGTGAGTGGTTGGCGAT
GGAGGATTGGATGGTTGGATCGCGCAGTCCGTGGTGAATGTACATTAACT
ATGATGGTTTACGATGATGAATCTCCTATGTAAAAATATATTTCCTATGT
TTGATTTATTTATTTTCCTAAGCTTCAGTTAATTTGGCAAATTGGATCAC
TACTATACTTCATACTACAATGTTCATTGTATATTTTATCTACTACTACT
ACATCCGAATCAATATACATCGCACCCCCAACAACAAACAATATACCCAA
AGCAGCTACATACTACAACTCTCCATCATCCACTACATAGTAATCGTCCA
AGTTCCAAGACATGCG
back to top

Coding sequence (CDS) from alignment at ch4:3062482..3063897+

>KJC3_005555-T1 ID=KJC3_005555-T1|Name=KJC3_005555-T1|organism=Aspergillus niger KJC3|type=CDS|length=1506bp|location=Sequence derived from alignment at ch4:3062482..3063897+ (Aspergillus niger KJC3)
ATGTCCTTTCCCCGTGGCCATGAACACGAACATGCATATGAACCTATCTC
CCTCCGGAAAAGACTCAAGGGCAACTTCACCTCCCTACGTCGAATTTCAC
GATCCTTTCTCCGCCGCATCTCTGGCATATCAACCTCAAAACCTGAGCCT
CCGGCCTTAGCTGTTCCCATGACACCATCATCTCCAAGCTGGCCTGTCCA
CCCAGAACCTTGTCAAATTCAGGGTCAAACCTTTATGCGCACAGGCACGG
AAGAGGTTCCCGAGCCTACCTCGGACCTTTGTCCGGACCTCCTTGACTCC
TGGTACCCGAGATACCTGGCGTGCACGCAGTTCTTTGTTTCCTATGCGCA
GCATACCCCGACAGTGCAGTCGCTGGCCGCATTTCTCAACATTCGACTTC
CTTGCCAGCAGTCAGGGGCCCAAACAACCCATCCGTCATTACGCGCTTAC
ATTCGGCGCCTCATTGTAACAGCACAGGATAGTCCTGCTGTACTGAGCGC
GTTCTTCGGAGAAGACTGGGTCGGGGGAGTGGGGAGCATGATCAAGCAAG
AGCGGGTGAACTACTTGTTTACGGCAAAGAGCGGCGGGTGGGCGTCGACA
AAGGCGGCGTATGACATTCTGCCGGACGAACAAACGCCATTTTTGCGGCC
ATTGCGAGCAGCAACAGAGGAAGAATTACGCGAGGCGGAAGCGCGCTGGA
GTGAGTGGTTGGCGATGGAGGATTGGATGGTTGGATCGCGCAGTCCGTGG
TGAATGTCCTTTCCCCGTGGCCATGAACACGAACATGCATATGAACCTAT
CTCCCTCCGGAAAAGACTCAAGGGCAACTTCACCTCCCTACGTCGAATTT
CACGATCCTTTCTCCGCCGCATCTCTGGCATATCAACCTCAAAACCTGAG
CCTCCGGCCTTAGCTGTTCCCATGACACCATCATCTCCAAGCTGGCCTGT
CCACCCAGAACCTTGTCAAATTCAGGGTCAAACCTTTATGCGCACAGGCA
CGGAAGAGGTTCCCGAGCCTACCTCGGACCTTTGTCCGGACCTCCTTGAC
TCCTGGTACCCGAGATACCTGGCGTGCACGCAGTTCTTTGTTTCCTATGC
GCAGCATACCCCGACAGTGCAGTCGCTGGCCGCATTTCTCAACATTCGAC
TTCCTTGCCAGCAGTCAGGGGCCCAAACAACCCATCCGTCATTACGCGCT
TACATTCGGCGCCTCATTGTAACAGCACAGGATAGTCCTGCTGTACTGAG
CGCGTTCTTCGGAGAAGACTGGGTCGGGGGAGTGGGGAGCATGATCAAGC
AAGAGCGGGTGAACTACTTGTTTACGGCAAAGAGCGGCGGGTGGGCGTCG
ACAAAGGCGGCGTATGACATTCTGCCGGACGAACAAACGCCATTTTTGCG
GCCATTGCGAGCAGCAACAGAGGAAGAATTACGCGAGGCGGAAGCGCGCT
GGAGTGAGTGGTTGGCGATGGAGGATTGGATGGTTGGATCGCGCAGTCCG
TGGTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005555KJC3_005555Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005555-T1.utr5p1KJC3_005555-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005555-T1.exon1KJC3_005555-T1.exon1Aspergillus niger KJC3exon
KJC3_005555-T1.exon2KJC3_005555-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005555-T1.cdsKJC3_005555-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005555-T1.utr3p1KJC3_005555-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005555-T1KJC3_005555-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:3062482..3063897 +
Powered by Drupal