|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3110246..3112287+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005574-T1 ID=KJC3_005574-T1|Name=KJC3_005574-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2042bp|location=Sequence derived from alignment at ch4:3110246..3112287+ (Aspergillus niger KJC3)
TATGACTATCATTCTTTGATGCTACATCCCCTCAAACGAAACAAAACCTC
CGACTAGTAACTACCCTATGTGGTGAACATCTTCTAACTACAATCCCCTC
TCCCCACATCCCGCTCAACCCCAACACCCATCCATCCCACTAAACACCCC
CATAAAGTACAAACAGAAAATTACATCGAAGATGTCCGCTTCATCCCTCG
TAGACCTCGACTCCCTCGAAGCCACCATCCTCATCGACAATGACCTGGAC
CCCATGTCCCCCGTCCCCCCAGACACAGTAGAAGTGACAGGTCTAATGCG
CACACTGGCAACATCCTCTCCACATGATATCCACGACCGCGGAGATGCGC
ACAAGGAACTTCAAATGGAGGATATATGCTGCTCTGCGCATGGGTTGTCG
ATTCTTGTGGTATGCCCCTCCTCCCCTTGGATCTTGAGATGAGTGATGCA
AGCTAAGAGAATTATCCAGACAGCAACAAAAGACAACAAACAGCACACGA
TCCTCTTCGACGCCGGACCTGAAGGCGACGCCTGGGAGAGGAATGTTAAG
CGCCTACGGCCAGATTTGGCGAGTGTGGAGGTCGTGCAGTTGTCGCATTG
GCATCGGGATCATTCTGGTACGTTACTCTTTCTGTTATCATGGTGTAGTG
GGCTTGGTGTGTGCTAAGTGGGTTAATGCAGGTGGTCTTCAAAGGGCTAT
TGAGATGATTACGGATGCTAAGAAGAAGGCCGGGGGAAATTCCTCTGCGA
CAATAGTTGATCTCCATCCCGATCGACCAGATTACAGAGGCATGGCTATC
GGAAATAATATCATATCATTGCAGGCTGATCCCAGCTTCGAGGAGCTAGA
AGCCGCCGGAGGCGTGGTGCAGAAACACGCTGATGCGCATACCGTCCTGG
ACGACCTTTTCTTCATATCGGGGGAGATTCCTCGACGGACGGGGTATGAG
CATGGGTTGAAGGGGGGGATGCGGTTCGATGCGGAAGAAAAGGACTGGTT
CTCGGATGAGGGGATTGCTGATGAGAGGTTTTTGATGTGTAGGCTTAATG
GTATGCTATCCGATTCGATTCATATTTGATGATAGCTATGCTTGGGTAAC
GCTGACTGTATTCAGACAAGGGCATCGTCATGTTCACGGCGTGCAGTCAC
GCCGGGGTGGTCAATTGTGCGCAACATGCGGTGGATTCGCTGGACGGTGA
GGTTCCCCTGCATGCTATCGTCGGGGGCTTTCACCTTGCTACTAGTGAGA
CGTCGCAGATGGAGAGCACGGTTAGGGATCTGAAGAGGTTGGATCCTGCG
GTTATTCTTCCCGGTCATTGCTCTGGTTGGAGGGCTAAGTTTGCTATTGA
GAGGAGTATGCCGGGGGCGATGGTGCCTTGTTCGGTGGGGATGAGGATTA
AATTTTAGTTCACTTTCAGTTTCGCTGGGATTAATTGTCATGATGGATGC
TGGTGTCCTTGAGATGATGCCAGTCTGGGCTGTGTTTCAAGACAACCCCA
GCGACAATGCTTGGTCGGACCGTCGTGCCATGGTGACGACTTGATGCGAT
TACAGGTCATCTGGCTGTAATTGGATGCTCGTCGACCTGGTTAGTCAACC
TTGGCCGAACATCATGGCGGCATACATGCTGCAATGTCAGTGGTATACGC
TTGTTCCCATGGAGCTTCGATATCAGAGCATCGAGTTTCAGCCATGCTCG
ATCGATATTCTGACTCGGATGATAACGCGAACAACATGATAAGTCTCGCG
GGGAGTCCTCAGATATGGTGGTTTCTATTTAGTCGCATCGTGGGCATCTC
AGTGACACCGTTCCATTGGCAGCTTTGGTATAGAACCGGGGGTCACCGTG
CACATGCTGAGCGGTAGTGAGAACTATCGAGGTATATATATATGGCCTAG
AAGCGTTTGAACATATGCAAGACCATTAATATATAAACGCTTGCGCAAAC
TTGAATCCGTTTAGGTGTATGTTGGGATTGTATATATACCGGTGCACATT
TAGGCTCGATATATATTTACTACACAAACTAAAGAATTCGAC back to topCoding sequence (CDS) from alignment at ch4:3110246..3112287+ >KJC3_005574-T1 ID=KJC3_005574-T1|Name=KJC3_005574-T1|organism=Aspergillus niger KJC3|type=CDS|length=4152bp|location=Sequence derived from alignment at ch4:3110246..3112287+ (Aspergillus niger KJC3)
ATGTCCGCTTCATCCCTCGTAGACCTCGACTCCCTCGAAGCCACCATCCT
CATCGACAATGACCTGGACCCCATGTCCCCCGTCCCCCCAGACACAGTAG
AAGTGACAGGTCTAATGCGCACACTGGCAACATCCTCTCCACATGATATC
CACGACCGCGGAGATGCGCACAAGGAACTTCAAATGGAGGATATATGCTG
CTCTGCGCATGGGTTGTCGATTCTTGTGACAGCAACAAAAGACAACAAAC
AGCACACGATCCTCTTCGACGCCGGACCTGAAGGCGACGCCTGGGAGAGG
AATGTTAAGCGCCTACGGCCAGATTTGGCGAGTGTGGAGGTCGTGCAGTT
GTCGCATTGGCATCGGGATCATTCTGGTGGTCTTCAAAGGGCTATTGAGA
TGATTACGGATGCTAAGAAGAAGGCCGGGGGAAATTCCTCTGCGACAATA
GTTGATCTCCATCCCGATCGACCAGATTACAGAGGCATGGCTATCGGAAA
TAATATCATATCATTGCAGGCTGATCCCAGCTTCGAGGAGCTAGAAGCCG
CCGGAGGCGTGGTGCAGAAACACGCTGATGCGCATACCGTCCTGGACGAC
CTTTTCTTCATATCGGGGGAGATTCCTCGACGGACGGGGTATGAGCATGG
GTTGAAGGGGGGGATGCGGTTCGATGCGGAAGAAAAGGACTGGTTCTCGG
ATGAGGGGATTGCTGATGAGAGGTTTTTGATGTGTAGGCTTAATGACAAG
GGCATCGTCATGTTCACGGCGTGCAGTCACGCCGGGGTGGTCAATTGTGC
GCAACATGCGGTGGATTCGCTGGACGGTGAGGTTCCCCTGCATGCTATCG
TCGGGGGCTTTCACCTTGCTACTAGTGAGACGTCGCAGATGGAGAGCACG
GTTAGGGATCTGAAGAGGTTGGATCCTGCGGTTATTCTTCCCGGTCATTG
CTCTGGTTGGAGGGCTAAGTTTGCTATTGAGAGGAGTATGCCGGGGGCGA
TGGTGCCTTGTTCGGTGGGGATGAGGATTAAATTTTAGATGTCCGCTTCA
TCCCTCGTAGACCTCGACTCCCTCGAAGCCACCATCCTCATCGACAATGA
CCTGGACCCCATGTCCCCCGTCCCCCCAGACACAGTAGAAGTGACAGGTC
TAATGCGCACACTGGCAACATCCTCTCCACATGATATCCACGACCGCGGA
GATGCGCACAAGGAACTTCAAATGGAGGATATATGCTGCTCTGCGCATGG
GTTGTCGATTCTTGTGACAGCAACAAAAGACAACAAACAGCACACGATCC
TCTTCGACGCCGGACCTGAAGGCGACGCCTGGGAGAGGAATGTTAAGCGC
CTACGGCCAGATTTGGCGAGTGTGGAGGTCGTGCAGTTGTCGCATTGGCA
TCGGGATCATTCTGGTGGTCTTCAAAGGGCTATTGAGATGATTACGGATG
CTAAGAAGAAGGCCGGGGGAAATTCCTCTGCGACAATAGTTGATCTCCAT
CCCGATCGACCAGATTACAGAGGCATGGCTATCGGAAATAATATCATATC
ATTGCAGGCTGATCCCAGCTTCGAGGAGCTAGAAGCCGCCGGAGGCGTGG
TGCAGAAACACGCTGATGCGCATACCGTCCTGGACGACCTTTTCTTCATA
TCGGGGGAGATTCCTCGACGGACGGGGTATGAGCATGGGTTGAAGGGGGG
GATGCGGTTCGATGCGGAAGAAAAGGACTGGTTCTCGGATGAGGGGATTG
CTGATGAGAGGTTTTTGATGTGTAGGCTTAATGACAAGGGCATCGTCATG
TTCACGGCGTGCAGTCACGCCGGGGTGGTCAATTGTGCGCAACATGCGGT
GGATTCGCTGGACGGTGAGGTTCCCCTGCATGCTATCGTCGGGGGCTTTC
ACCTTGCTACTAGTGAGACGTCGCAGATGGAGAGCACGGTTAGGGATCTG
AAGAGGTTGGATCCTGCGGTTATTCTTCCCGGTCATTGCTCTGGTTGGAG
GGCTAAGTTTGCTATTGAGAGGAGTATGCCGGGGGCGATGGTGCCTTGTT
CGGTGGGGATGAGGATTAAATTTTAGATGTCCGCTTCATCCCTCGTAGAC
CTCGACTCCCTCGAAGCCACCATCCTCATCGACAATGACCTGGACCCCAT
GTCCCCCGTCCCCCCAGACACAGTAGAAGTGACAGGTCTAATGCGCACAC
TGGCAACATCCTCTCCACATGATATCCACGACCGCGGAGATGCGCACAAG
GAACTTCAAATGGAGGATATATGCTGCTCTGCGCATGGGTTGTCGATTCT
TGTGACAGCAACAAAAGACAACAAACAGCACACGATCCTCTTCGACGCCG
GACCTGAAGGCGACGCCTGGGAGAGGAATGTTAAGCGCCTACGGCCAGAT
TTGGCGAGTGTGGAGGTCGTGCAGTTGTCGCATTGGCATCGGGATCATTC
TGGTGGTCTTCAAAGGGCTATTGAGATGATTACGGATGCTAAGAAGAAGG
CCGGGGGAAATTCCTCTGCGACAATAGTTGATCTCCATCCCGATCGACCA
GATTACAGAGGCATGGCTATCGGAAATAATATCATATCATTGCAGGCTGA
TCCCAGCTTCGAGGAGCTAGAAGCCGCCGGAGGCGTGGTGCAGAAACACG
CTGATGCGCATACCGTCCTGGACGACCTTTTCTTCATATCGGGGGAGATT
CCTCGACGGACGGGGTATGAGCATGGGTTGAAGGGGGGGATGCGGTTCGA
TGCGGAAGAAAAGGACTGGTTCTCGGATGAGGGGATTGCTGATGAGAGGT
TTTTGATGTGTAGGCTTAATGACAAGGGCATCGTCATGTTCACGGCGTGC
AGTCACGCCGGGGTGGTCAATTGTGCGCAACATGCGGTGGATTCGCTGGA
CGGTGAGGTTCCCCTGCATGCTATCGTCGGGGGCTTTCACCTTGCTACTA
GTGAGACGTCGCAGATGGAGAGCACGGTTAGGGATCTGAAGAGGTTGGAT
CCTGCGGTTATTCTTCCCGGTCATTGCTCTGGTTGGAGGGCTAAGTTTGC
TATTGAGAGGAGTATGCCGGGGGCGATGGTGCCTTGTTCGGTGGGGATGA
GGATTAAATTTTAGATGTCCGCTTCATCCCTCGTAGACCTCGACTCCCTC
GAAGCCACCATCCTCATCGACAATGACCTGGACCCCATGTCCCCCGTCCC
CCCAGACACAGTAGAAGTGACAGGTCTAATGCGCACACTGGCAACATCCT
CTCCACATGATATCCACGACCGCGGAGATGCGCACAAGGAACTTCAAATG
GAGGATATATGCTGCTCTGCGCATGGGTTGTCGATTCTTGTGACAGCAAC
AAAAGACAACAAACAGCACACGATCCTCTTCGACGCCGGACCTGAAGGCG
ACGCCTGGGAGAGGAATGTTAAGCGCCTACGGCCAGATTTGGCGAGTGTG
GAGGTCGTGCAGTTGTCGCATTGGCATCGGGATCATTCTGGTGGTCTTCA
AAGGGCTATTGAGATGATTACGGATGCTAAGAAGAAGGCCGGGGGAAATT
CCTCTGCGACAATAGTTGATCTCCATCCCGATCGACCAGATTACAGAGGC
ATGGCTATCGGAAATAATATCATATCATTGCAGGCTGATCCCAGCTTCGA
GGAGCTAGAAGCCGCCGGAGGCGTGGTGCAGAAACACGCTGATGCGCATA
CCGTCCTGGACGACCTTTTCTTCATATCGGGGGAGATTCCTCGACGGACG
GGGTATGAGCATGGGTTGAAGGGGGGGATGCGGTTCGATGCGGAAGAAAA
GGACTGGTTCTCGGATGAGGGGATTGCTGATGAGAGGTTTTTGATGTGTA
GGCTTAATGACAAGGGCATCGTCATGTTCACGGCGTGCAGTCACGCCGGG
GTGGTCAATTGTGCGCAACATGCGGTGGATTCGCTGGACGGTGAGGTTCC
CCTGCATGCTATCGTCGGGGGCTTTCACCTTGCTACTAGTGAGACGTCGC
AGATGGAGAGCACGGTTAGGGATCTGAAGAGGTTGGATCCTGCGGTTATT
CTTCCCGGTCATTGCTCTGGTTGGAGGGCTAAGTTTGCTATTGAGAGGAG
TATGCCGGGGGCGATGGTGCCTTGTTCGGTGGGGATGAGGATTAAATTTT
AG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005574-T1.utr5p1 | KJC3_005574-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005574-T1.utr3p1 | KJC3_005574-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR041712 |
| DBxref | InterPro:IPR001279 |
| DBxref | InterPro:IPR036866 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3110246..3112287 + |
|
