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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3188406..3190251+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005601-T1 ID=KJC3_005601-T1|Name=KJC3_005601-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1846bp|location=Sequence derived from alignment at ch4:3188406..3190251+ (Aspergillus niger KJC3)
GTTTGCGAGGTCCCCTGACCTGATCCGCCCCCAAAGGATGTTGCCACTTT
CCTGCTTTCTCATTCGCTCTCATTTTCTTCTGATACTAAGCACTATCCCC
AGGATACTAAATGCTTTATTCTAAGCCTCGCATTATTCCTACGGATATAT
ATTCACAAACAGGAGAAATTAGGAACCACTCGTCACTACCGGATTCAACG
GCACGGTTTTGACTGAGGACCTTGGCGGACTGCAGAAACTGCTCGTACTC
GTAAAGCCGCGTCGAGTATTGCTGCGGGGCGGTCCAGACGCCGGACCCGG
CCTTAGCTCAAGCTAAACCGCCTGGCAGCTATCGTCCATGGCGGATCGCT
AATCAATTGAATTCAACTATCTTCAACTTTATGCAGGGTTGGGTTGGATC
CGATCCTTCGAAGACACATCCCTGTTCAGCTTAGATTAATTGATCGACCT
GATTGTTTCGATCATCAGCTCTTTTGGGCTACGTCAATGACTGGCCGTCC
TTCTATTCTATCTGAGTTGTATAGTGGTCTGTCTTGTGCCCATTAACTGC
ATCATGGCTAGCCTTCTCCGTTTACTACGCACCCAGTATAACCCGCCCGT
CGACCCCAGTGGGGTTTCATTTGCAGGAAAAACGGTCATTTTGACCGGAG
CTACCTCCGGACTGGGGTTTGAGGCCGCCGTCAAGCTCCTCAATCTCGGG
GTGGAGTCGCTCATTATAGGGAGCCGGAACCTCCAGCGAGGCCAAGCGGC
AAAGACGGAGCTTGAGAAGCTTACAAACAGACAAGGGGTGATTCAAGTAT
GGCAGCTGGAAATGAACAGCTTCCAGAGCGTCAAAAGTTTTGCAAACCGG
GTGAACGAGGAGCTGCGCCAATTGGACATTGCGTTACTGAACGCCGGAAT
ATGGAACCGCGATTTCGGCGTATCGCCCGAGGGATGGGAGGAGACATTGC
AGGTCAATACGTTATCTACTTCCCTATTGGCGCTTTTGCTCCTTCCGAAA
CTAAGGAGTAGTTCATCCTTGTCCGACCCGGCTCATCTTACGGTCGTATC
CAGCCAACAGTTCGTGCGCGTCAAAGCCAAGAGTCTCCGAACGGTGCAGC
CGTTGTTAAAGCATCTGAATAGCCCGCAGTCCTTCAAAGGCCCAAGGCAG
TATGGTATCTCGAAGCTTCTCCTGGAATATGTTCTCAAGACAGTAGCTGG
TCTTGTTCGGAATGAGAACGGCACCGTGCCGGTCATCATCAACACTGTAA
GCCCTGGGTTTTGCGTCTCATCTCTTGGACGGCAGTACAGTAGATTCTAC
GAGCGATGGGCGACGTGGTTGGCTTATAAGCTCTTTGCTCGCACGGCGGA
GCAAGGAAGCCGGTCGTTGGTCAGTGCCACTTATCAGGGGGTGGAGTCGC
ATGGGAAATGTTGGCGGAGTGATGGATATCTAGAGTGAGTGCTGCTCTGC
TGGGATGGTTTCTGCGTGTCTTTGCGGCGTGTTTGCTAATATTAGGGCAG
TGAATCTGTGGCGTTAACAACAGGAGCGGAAGGGAAGCAGTTCCAGGCGA
GAGCGTGGACGGAGATCATGAACGAGCTGGAGGAGCAGTCTGAGGGGCTG
AAGGAGTCAATCAGGGGGTGGTAAAAGCGCTTAATGTTCACTAGCCGGGG
CGATACGTTTACGCCTTCCTGCACGGGGCGATTGAATGACTGCCTAGCGT
GACTGATGAGTGATAGTCATAGTCAGACCATACCAGGCCATAATATGATA
GTAACAAGGCCTTCCCCGACGAACAGACGCTGGCCAGGCTCCACCGCGAA
TGGACGAGGAACCTGTGGGCCAAGCATTTCCGGAACAAATAAAGAA back to topCoding sequence (CDS) from alignment at ch4:3188406..3190251+ >KJC3_005601-T1 ID=KJC3_005601-T1|Name=KJC3_005601-T1|organism=Aspergillus niger KJC3|type=CDS|length=2010bp|location=Sequence derived from alignment at ch4:3188406..3190251+ (Aspergillus niger KJC3)
ATGGCTAGCCTTCTCCGTTTACTACGCACCCAGTATAACCCGCCCGTCGA
CCCCAGTGGGGTTTCATTTGCAGGAAAAACGGTCATTTTGACCGGAGCTA
CCTCCGGACTGGGGTTTGAGGCCGCCGTCAAGCTCCTCAATCTCGGGGTG
GAGTCGCTCATTATAGGGAGCCGGAACCTCCAGCGAGGCCAAGCGGCAAA
GACGGAGCTTGAGAAGCTTACAAACAGACAAGGGGTGATTCAAGTATGGC
AGCTGGAAATGAACAGCTTCCAGAGCGTCAAAAGTTTTGCAAACCGGGTG
AACGAGGAGCTGCGCCAATTGGACATTGCGTTACTGAACGCCGGAATATG
GAACCGCGATTTCGGCGTATCGCCCGAGGGATGGGAGGAGACATTGCAGG
TCAATACGTTATCTACTTCCCTATTGGCGCTTTTGCTCCTTCCGAAACTA
AGGAGTAGTTCATCCTTGTCCGACCCGGCTCATCTTACGGTCGTATCCAG
CCAACAGTTCGTGCGCGTCAAAGCCAAGAGTCTCCGAACGGTGCAGCCGT
TGTTAAAGCATCTGAATAGCCCGCAGTCCTTCAAAGGCCCAAGGCAGTAT
GGTATCTCGAAGCTTCTCCTGGAATATGTTCTCAAGACAGTAGCTGGTCT
TGTTCGGAATGAGAACGGCACCGTGCCGGTCATCATCAACACTGTAAGCC
CTGGGTTTTGCGTCTCATCTCTTGGACGGCAGTACAGTAGATTCTACGAG
CGATGGGCGACGTGGTTGGCTTATAAGCTCTTTGCTCGCACGGCGGAGCA
AGGAAGCCGGTCGTTGGTCAGTGCCACTTATCAGGGGGTGGAGTCGCATG
GGAAATGTTGGCGGAGTGATGGATATCTAGATGAATCTGTGGCGTTAACA
ACAGGAGCGGAAGGGAAGCAGTTCCAGGCGAGAGCGTGGACGGAGATCAT
GAACGAGCTGGAGGAGCAGTCTGAGGGGCTGAAGGAGTCAATCAGGGGGT
GGTAAATGGCTAGCCTTCTCCGTTTACTACGCACCCAGTATAACCCGCCC
GTCGACCCCAGTGGGGTTTCATTTGCAGGAAAAACGGTCATTTTGACCGG
AGCTACCTCCGGACTGGGGTTTGAGGCCGCCGTCAAGCTCCTCAATCTCG
GGGTGGAGTCGCTCATTATAGGGAGCCGGAACCTCCAGCGAGGCCAAGCG
GCAAAGACGGAGCTTGAGAAGCTTACAAACAGACAAGGGGTGATTCAAGT
ATGGCAGCTGGAAATGAACAGCTTCCAGAGCGTCAAAAGTTTTGCAAACC
GGGTGAACGAGGAGCTGCGCCAATTGGACATTGCGTTACTGAACGCCGGA
ATATGGAACCGCGATTTCGGCGTATCGCCCGAGGGATGGGAGGAGACATT
GCAGGTCAATACGTTATCTACTTCCCTATTGGCGCTTTTGCTCCTTCCGA
AACTAAGGAGTAGTTCATCCTTGTCCGACCCGGCTCATCTTACGGTCGTA
TCCAGCCAACAGTTCGTGCGCGTCAAAGCCAAGAGTCTCCGAACGGTGCA
GCCGTTGTTAAAGCATCTGAATAGCCCGCAGTCCTTCAAAGGCCCAAGGC
AGTATGGTATCTCGAAGCTTCTCCTGGAATATGTTCTCAAGACAGTAGCT
GGTCTTGTTCGGAATGAGAACGGCACCGTGCCGGTCATCATCAACACTGT
AAGCCCTGGGTTTTGCGTCTCATCTCTTGGACGGCAGTACAGTAGATTCT
ACGAGCGATGGGCGACGTGGTTGGCTTATAAGCTCTTTGCTCGCACGGCG
GAGCAAGGAAGCCGGTCGTTGGTCAGTGCCACTTATCAGGGGGTGGAGTC
GCATGGGAAATGTTGGCGGAGTGATGGATATCTAGATGAATCTGTGGCGT
TAACAACAGGAGCGGAAGGGAAGCAGTTCCAGGCGAGAGCGTGGACGGAG
ATCATGAACGAGCTGGAGGAGCAGTCTGAGGGGCTGAAGGAGTCAATCAG
GGGGTGGTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005601-T1.utr5p1 | KJC3_005601-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005601-T1.utr3p1 | KJC3_005601-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3188406..3190251 + |
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