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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3195776..3199154- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005604-T1 ID=KJC3_005604-T1|Name=KJC3_005604-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3379bp|location=Sequence derived from alignment at ch4:3195776..3199154- (Aspergillus niger KJC3)
GAATAATCTTCTGCATCACCCGCGTGTCGCCGCTCCAGCCATCAATCATC
CTTTCCCTTTCTCATCCCCATTCATTCCATCATCATTTCGCCCCCCCCAT
CCCAGAAATTAATTGACTTTTTGTTCCATCACGTCGCCTATCTCTCGTCT
CTCGTTGCTCAAGGTGGGTTTCCTAAGGCCTCGTCTTTCTCTCTCTTCCC
TTTGTTTCCCTGCCCTGTCCATCTCTCTCTCTACCGCCCACCCCCTTTGT
CGTTTCTTCCTGCCGTTCGGATCACGCCCGCGCGCGCCCTTCTGGTGTCC
TGTTCATCCCTCCTCCAAAATACCGTCACTCTTCCCAATCTCACCCCTCC
TTCCTGTTGCTCTTCCCACCCAACAACTCTCTCGCATCACCAACCCCCTC
CCACACACCCCCCGGTCGTTCACTATCTTCCCTGGTTTTTGCATATTATC
GCCTTACCTTCTCTCCGTAGCGGAGAAAGACAGTACTTCTCTCCATGTGG
GGACTCTAGGGAAATACTAAATATAAATTCTGCCCACAGTCTTGGAGGTT
CCTGCCATCCTTTTTTATTATTTTTTTACACCCTCTAATCGCGTCCCGGA
AATCCTTGCGGGCGGCGCTTCCTCGAGTTTCAGCTCGCGCCGCCATCTCA
TCCGGACGAACCATTCCCCCAGAAGCTCTGCTTGACCTGTTCGCCTGCGT
GTTTCATCGACGCTCTTTTCTGTGGGATTCGTTCATCCGCTGTCCCTCAT
GGGTCGCAGAAAGATCGAGATCAAGGCGATCAAGGATGATCGCAACCGCT
CAGTGTAAGTGCTAAAGCTGGTGGATCTCTTCACCTCTCCCCATTAAACC
CTAGTTCGTCAAGCTAACGCTCTGGTGCGCGACTAGGACCTTTCTGAAAC
GGAAGGGTGGTCTGTTCAAGAAGGCACATGAGCTTGCGGTCCTGTGTTCG
GTTGATGTCGCTGTTATTATCTTTGGTCACAACAAGAAGCTCTACGAATT
CTCGTCATGTGATATGCGAGAGGCCCTCACTCGATATCAATACGTGCGTT
GTCCACCTAACCCGCTCGTCTGGAAAGACTGTCGTTGATCTGACATTGCC
GCTTTCCTATGCTTTTAGTTTGGTCCCCCACATGAACACAAAGGCCCTGA
AGACTTTAACGGCAAACGCGACGATGATGATGACGAAGATGAGACGACGC
CTGCCCCCGAAGATGTGCATCCTACGCCTCCAAATCCTCCCATGATTCCC
GCCCACCTGCCAGGTCATCCCGGCTTCCAGCACGTCACTCATGCGCCGTC
TGCTTCCCCGCCCATAGGGAATGGGATGGCATTTGCTCCGCGTCACGGTA
CCCCTCAACCGCAGGGAGTTTCTCGGCCTTCGTCTCGGAATCATCTTCGT
CGGGTGAGCTCCAATATGGGACCTCAACAGCATCACCATGCGACCCCTCC
GCCGCCTCCGCCGCCGCCGCAAAATGGCTTCACGTACATTCCTAATCCTT
CGGTATATAACCCCAACGCTGCTCACGCCATGGCTCAACCTCCCCGCCCA
CCTCAGTTCACTCATTACGGACCCCCCGGGCCGCATCACCAACCCCCTCC
GCCTCCACAGCATCATCCAGCGATGCCGCCACACTCCATGCCCCCACAGT
CTATGCCTCCACATACAATGGCACCGCAAGCCATGCCGCCGCACCACCAG
GCTCCTCCACACATGCCACACCCGCCTCATGCACTTTCACAGCAACCGCC
TCCAATGGCCATGACCCAGCCGCCCCATGCCGCCATCCCGCAGGTCGCGC
AAGCGTTTCTCCCAGAGCAAGGACGAAATTCCATGCCTCCGACGTTTACA
ACAGAACAGCAACCACCGCCGCCACGAACAGTGTCGCTTCCTGAAGGAAC
CGCTCCGACAGACGCAATGCCAGGTCCCATGAAGACGGAAGGAACCCCAT
CCCCGCCGCACCAGCGATCTCTCTCTTCCAAGTCTCGCAGTATCTTCACA
CCCATTGACGACCGAGGCTCCGTATTGGCGCGCCATTTTGGCGTAGGTCC
TCCGACGGAGGCGGGAGAGAATGCGCAAACGAAGGCTGAAGGAGCAACAC
TCGGACCAAACGAAGGGAAGCCTGCTGGGCTAACTGCAAAGCCCCCTCCT
CCACCTCCCCGAGCGGCCACGGAAGCCCCGCGTCCCCAGCCGGTAGTTGA
CCTGAAGCCGCCTGTGCGTACAAACAGCGGCCAGTTCCCGCCTAAGCGCC
CGCAGTTGAAGGTACAGATACCGAGTGAGAATTCGGACCGGGGCAGCGCA
ACGGCAGATTCATCGTCACGTGATTCTGCGGGGAACAAAACGCTCACGCC
TGCCAAAGCGAATCCAGACACCGGTCACTCGAGCGTGGTATTGCCCCCGC
CCTCGCCGTCTGCGGGTGCGATATTAAGTGCAGGGGCTCAAGGGCCGCCA
AATCCTTTTGCCCGGCCACCGCCTCCGGGAGCAGCACCACAGAACAACAG
TGCATACAACAATAATAGCAATATAGATACGCCAATCTCTGCTCTTCCTA
GTCGGTTCGTCTCGGATGCGCTTCTCCCGTCACCGTCCAGTTTCTTTCCG
GAATGGGGCTTTGGGCGGTCTGGACCAGACAGCAACATGTTGCCCAGTCC
CTTGACGTTCCCTACGCCGGCGGTACAAAGTGGCCCCGGGTTTGGGCGCG
AGGATGAGCAAGACAAAAAGCGCAAAAGCCCTGATAGTGGACCCAATGCG
GAAGGGGTAGTGAAGAAACCAAAGACGTAATCCACTCCATATTGTTACAA
CTACTAGACTGATGATTGTGGTATTTTGTTGCTGGGGTGATCAAGTCCCC
CGTGTTTCATATATGGCATCTCAAGGCGTTGGCGAAAGCTACTTTTGGTT
TCCTTAATTGGGATGGGAAAGTTCGAATGAGGCTCGTTTTGTTTCCCCTG
GATCCTTTTTTTGTCCTCCGGTTCTGAACCAGTACCAAGTCCTTCCTTGT
TTTGTGATAAGGGTTTCCGATTTAACTTTATACCCCTTCCTTTTATTGTT
ATTGCCATGGTCGTTTTTGGCAGTTGACCTAGCTATCCATCGATTTCTCT
CCAAAGTCCGAAACCAAATGAGAATGGTGCGATAAATCTTTCCTTTTCCT
ACCTATTTCCTTTTTCTCTTGCTGTTTTGCTTTTTTTCGCTGGGGACTTT
GAAGATGATAGAAGACACATAATATTATTATATTAAGTGTTTCAATCTTC
TAGTCAAGGGTGGCTTTCTCTTTCATATATTACTATGTTCTTATTATTTT
GGAATAAAAGTAAAAAAAAAAAAGGTGTACATAACAAAGATCTGCGATGT
GCAACTAGGAGAATTAATTCAATAGTAGG back to topCoding sequence (CDS) from alignment at ch4:3195776..3199154- >KJC3_005604-T1 ID=KJC3_005604-T1|Name=KJC3_005604-T1|organism=Aspergillus niger KJC3|type=CDS|length=5625bp|location=Sequence derived from alignment at ch4:3195776..3199154- (Aspergillus niger KJC3)
TTTGGTCCCCCACATGAACACAAAGGCCCTGAAGACTTTAACGGCAAACG
CGACGATGATGATGACGAAGATGAGACGACGCCTGCCCCCGAAGATGTGC
ATCCTACGCCTCCAAATCCTCCCATGATTCCCGCCCACCTGCCAGGTCAT
CCCGGCTTCCAGCACGTCACTCATGCGCCGTCTGCTTCCCCGCCCATAGG
GAATGGGATGGCATTTGCTCCGCGTCACGGTACCCCTCAACCGCAGGGAG
TTTCTCGGCCTTCGTCTCGGAATCATCTTCGTCGGGTGAGCTCCAATATG
GGACCTCAACAGCATCACCATGCGACCCCTCCGCCGCCTCCGCCGCCGCC
GCAAAATGGCTTCACGTACATTCCTAATCCTTCGGTATATAACCCCAACG
CTGCTCACGCCATGGCTCAACCTCCCCGCCCACCTCAGTTCACTCATTAC
GGACCCCCCGGGCCGCATCACCAACCCCCTCCGCCTCCACAGCATCATCC
AGCGATGCCGCCACACTCCATGCCCCCACAGTCTATGCCTCCACATACAA
TGGCACCGCAAGCCATGCCGCCGCACCACCAGGCTCCTCCACACATGCCA
CACCCGCCTCATGCACTTTCACAGCAACCGCCTCCAATGGCCATGACCCA
GCCGCCCCATGCCGCCATCCCGCAGGTCGCGCAAGCGTTTCTCCCAGAGC
AAGGACGAAATTCCATGCCTCCGACGTTTACAACAGAACAGCAACCACCG
CCGCCACGAACAGTGTCGCTTCCTGAAGGAACCGCTCCGACAGACGCAAT
GCCAGGTCCCATGAAGACGGAAGGAACCCCATCCCCGCCGCACCAGCGAT
CTCTCTCTTCCAAGTCTCGCAGTATCTTCACACCCATTGACGACCGAGGC
TCCGTATTGGCGCGCCATTTTGGCGTAGGTCCTCCGACGGAGGCGGGAGA
GAATGCGCAAACGAAGGCTGAAGGAGCAACACTCGGACCAAACGAAGGGA
AGCCTGCTGGGCTAACTGCAAAGCCCCCTCCTCCACCTCCCCGAGCGGCC
ACGGAAGCCCCGCGTCCCCAGCCGGTAGTTGACCTGAAGCCGCCTGTGCG
TACAAACAGCGGCCAGTTCCCGCCTAAGCGCCCGCAGTTGAAGGTACAGA
TACCGAGTGAGAATTCGGACCGGGGCAGCGCAACGGCAGATTCATCGTCA
CGTGATTCTGCGGGGAACAAAACGCTCACGCCTGCCAAAGCGAATCCAGA
CACCGGTCACTCGAGCGTGGTATTGCCCCCGCCCTCGCCGTCTGCGGGTG
CGATATTAAGTGCAGGGGCTCAAGGGCCGCCAAATCCTTTTGCCCGGCCA
CCGCCTCCGGGAGCAGCACCACAGAACAACAGTGCATACAACAATAATAG
CAATATAGATACGCCAATCTCTGCTCTTCCTAGTCGGTTCGTCTCGGATG
CGCTTCTCCCGTCACCGTCCAGTTTCTTTCCGGAATGGGGCTTTGGGCGG
TCTGGACCAGACAGCAACATGTTGCCCAGTCCCTTGACGTTCCCTACGCC
GGCGGTACAAAGTGGCCCCGGGTTTGGGCGCGAGGATGAGCAAGACAAAA
AGCGCAAAAGCCCTGATAGTGGACCCAATGCGGAAGGGGTAGTGAAGAAA
CCAAAGACGTAAGACCTTTCTGAAACGGAAGGGTGGTCTGTTCAAGAAGG
CACATGAGCTTGCGGTCCTGTGTTCGGTTGATGTCGCTGTTATTATCTTT
GGTCACAACAAGAAGCTCTACGAATTCTCGTCATGTGATATGCGAGAGGC
CCTCACTCGATATCAATACATGGGTCGCAGAAAGATCGAGATCAAGGCGA
TCAAGGATGATCGCAACCGCTCAGTTTTGGTCCCCCACATGAACACAAAG
GCCCTGAAGACTTTAACGGCAAACGCGACGATGATGATGACGAAGATGAG
ACGACGCCTGCCCCCGAAGATGTGCATCCTACGCCTCCAAATCCTCCCAT
GATTCCCGCCCACCTGCCAGGTCATCCCGGCTTCCAGCACGTCACTCATG
CGCCGTCTGCTTCCCCGCCCATAGGGAATGGGATGGCATTTGCTCCGCGT
CACGGTACCCCTCAACCGCAGGGAGTTTCTCGGCCTTCGTCTCGGAATCA
TCTTCGTCGGGTGAGCTCCAATATGGGACCTCAACAGCATCACCATGCGA
CCCCTCCGCCGCCTCCGCCGCCGCCGCAAAATGGCTTCACGTACATTCCT
AATCCTTCGGTATATAACCCCAACGCTGCTCACGCCATGGCTCAACCTCC
CCGCCCACCTCAGTTCACTCATTACGGACCCCCCGGGCCGCATCACCAAC
CCCCTCCGCCTCCACAGCATCATCCAGCGATGCCGCCACACTCCATGCCC
CCACAGTCTATGCCTCCACATACAATGGCACCGCAAGCCATGCCGCCGCA
CCACCAGGCTCCTCCACACATGCCACACCCGCCTCATGCACTTTCACAGC
AACCGCCTCCAATGGCCATGACCCAGCCGCCCCATGCCGCCATCCCGCAG
GTCGCGCAAGCGTTTCTCCCAGAGCAAGGACGAAATTCCATGCCTCCGAC
GTTTACAACAGAACAGCAACCACCGCCGCCACGAACAGTGTCGCTTCCTG
AAGGAACCGCTCCGACAGACGCAATGCCAGGTCCCATGAAGACGGAAGGA
ACCCCATCCCCGCCGCACCAGCGATCTCTCTCTTCCAAGTCTCGCAGTAT
CTTCACACCCATTGACGACCGAGGCTCCGTATTGGCGCGCCATTTTGGCG
TAGGTCCTCCGACGGAGGCGGGAGAGAATGCGCAAACGAAGGCTGAAGGA
GCAACACTCGGACCAAACGAAGGGAAGCCTGCTGGGCTAACTGCAAAGCC
CCCTCCTCCACCTCCCCGAGCGGCCACGGAAGCCCCGCGTCCCCAGCCGG
TAGTTGACCTGAAGCCGCCTGTGCGTACAAACAGCGGCCAGTTCCCGCCT
AAGCGCCCGCAGTTGAAGGTACAGATACCGAGTGAGAATTCGGACCGGGG
CAGCGCAACGGCAGATTCATCGTCACGTGATTCTGCGGGGAACAAAACGC
TCACGCCTGCCAAAGCGAATCCAGACACCGGTCACTCGAGCGTGGTATTG
CCCCCGCCCTCGCCGTCTGCGGGTGCGATATTAAGTGCAGGGGCTCAAGG
GCCGCCAAATCCTTTTGCCCGGCCACCGCCTCCGGGAGCAGCACCACAGA
ACAACAGTGCATACAACAATAATAGCAATATAGATACGCCAATCTCTGCT
CTTCCTAGTCGGTTCGTCTCGGATGCGCTTCTCCCGTCACCGTCCAGTTT
CTTTCCGGAATGGGGCTTTGGGCGGTCTGGACCAGACAGCAACATGTTGC
CCAGTCCCTTGACGTTCCCTACGCCGGCGGTACAAAGTGGCCCCGGGTTT
GGGCGCGAGGATGAGCAAGACAAAAAGCGCAAAAGCCCTGATAGTGGACC
CAATGCGGAAGGGGTAGTGAAGAAACCAAAGACGTAAGACCTTTCTGAAA
CGGAAGGGTGGTCTGTTCAAGAAGGCACATGAGCTTGCGGTCCTGTGTTC
GGTTGATGTCGCTGTTATTATCTTTGGTCACAACAAGAAGCTCTACGAAT
TCTCGTCATGTGATATGCGAGAGGCCCTCACTCGATATCAATACATGGGT
CGCAGAAAGATCGAGATCAAGGCGATCAAGGATGATCGCAACCGCTCAGT
TTTGGTCCCCCACATGAACACAAAGGCCCTGAAGACTTTAACGGCAAACG
CGACGATGATGATGACGAAGATGAGACGACGCCTGCCCCCGAAGATGTGC
ATCCTACGCCTCCAAATCCTCCCATGATTCCCGCCCACCTGCCAGGTCAT
CCCGGCTTCCAGCACGTCACTCATGCGCCGTCTGCTTCCCCGCCCATAGG
GAATGGGATGGCATTTGCTCCGCGTCACGGTACCCCTCAACCGCAGGGAG
TTTCTCGGCCTTCGTCTCGGAATCATCTTCGTCGGGTGAGCTCCAATATG
GGACCTCAACAGCATCACCATGCGACCCCTCCGCCGCCTCCGCCGCCGCC
GCAAAATGGCTTCACGTACATTCCTAATCCTTCGGTATATAACCCCAACG
CTGCTCACGCCATGGCTCAACCTCCCCGCCCACCTCAGTTCACTCATTAC
GGACCCCCCGGGCCGCATCACCAACCCCCTCCGCCTCCACAGCATCATCC
AGCGATGCCGCCACACTCCATGCCCCCACAGTCTATGCCTCCACATACAA
TGGCACCGCAAGCCATGCCGCCGCACCACCAGGCTCCTCCACACATGCCA
CACCCGCCTCATGCACTTTCACAGCAACCGCCTCCAATGGCCATGACCCA
GCCGCCCCATGCCGCCATCCCGCAGGTCGCGCAAGCGTTTCTCCCAGAGC
AAGGACGAAATTCCATGCCTCCGACGTTTACAACAGAACAGCAACCACCG
CCGCCACGAACAGTGTCGCTTCCTGAAGGAACCGCTCCGACAGACGCAAT
GCCAGGTCCCATGAAGACGGAAGGAACCCCATCCCCGCCGCACCAGCGAT
CTCTCTCTTCCAAGTCTCGCAGTATCTTCACACCCATTGACGACCGAGGC
TCCGTATTGGCGCGCCATTTTGGCGTAGGTCCTCCGACGGAGGCGGGAGA
GAATGCGCAAACGAAGGCTGAAGGAGCAACACTCGGACCAAACGAAGGGA
AGCCTGCTGGGCTAACTGCAAAGCCCCCTCCTCCACCTCCCCGAGCGGCC
ACGGAAGCCCCGCGTCCCCAGCCGGTAGTTGACCTGAAGCCGCCTGTGCG
TACAAACAGCGGCCAGTTCCCGCCTAAGCGCCCGCAGTTGAAGGTACAGA
TACCGAGTGAGAATTCGGACCGGGGCAGCGCAACGGCAGATTCATCGTCA
CGTGATTCTGCGGGGAACAAAACGCTCACGCCTGCCAAAGCGAATCCAGA
CACCGGTCACTCGAGCGTGGTATTGCCCCCGCCCTCGCCGTCTGCGGGTG
CGATATTAAGTGCAGGGGCTCAAGGGCCGCCAAATCCTTTTGCCCGGCCA
CCGCCTCCGGGAGCAGCACCACAGAACAACAGTGCATACAACAATAATAG
CAATATAGATACGCCAATCTCTGCTCTTCCTAGTCGGTTCGTCTCGGATG
CGCTTCTCCCGTCACCGTCCAGTTTCTTTCCGGAATGGGGCTTTGGGCGG
TCTGGACCAGACAGCAACATGTTGCCCAGTCCCTTGACGTTCCCTACGCC
GGCGGTACAAAGTGGCCCCGGGTTTGGGCGCGAGGATGAGCAAGACAAAA
AGCGCAAAAGCCCTGATAGTGGACCCAATGCGGAAGGGGTAGTGAAGAAA
CCAAAGACGTAAGACCTTTCTGAAACGGAAGGGTGGTCTGTTCAAGAAGG
CACATGAGCTTGCGGTCCTGTGTTCGGTTGATGTCGCTGTTATTATCTTT
GGTCACAACAAGAAGCTCTACGAATTCTCGTCATGTGATATGCGAGAGGC
CCTCACTCGATATCAATACATGGGTCGCAGAAAGATCGAGATCAAGGCGA
TCAAGGATGATCGCAACCGCTCAGT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
| GO:0046983 | protein dimerization activity |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005604-T1.utr3p1 | KJC3_005604-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR033896 |
| DBxref | InterPro:IPR036879 |
| DBxref | InterPro:IPR002100 |
| DBxref | PFAM:PF00319 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3195776..3199154 - |
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