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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3223334..3225427- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005612-T1 ID=KJC3_005612-T1|Name=KJC3_005612-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2094bp|location=Sequence derived from alignment at ch4:3223334..3225427- (Aspergillus niger KJC3)
GCTTCTTGTTGGATTCAGGCTGCCTTCTGAATTCTGCGCCGATTTCTTCA
ATCGAAGAAGACGAGACTAGGTGTGGACGTCCGTTATATACGTCACATCC
GTCAGACTATACTGCCGATATAGTGTTGTAAGTGGACCCGCTTGTATAGA
TAAGGAACTATCGCGATGCAATATCGCCATTATGCTTTATCGCATCCTAA
TTGAAACAATATAACACAAATCATAACAATTCTAGGTAGAAGCGCCCAAC
ATGTTTCCTTCTGAAGGGGATATCGCTCGCGCCTTTGCTTCCCAAAGCCC
TCTGGGCCAACCTCAGCAGATCCAACAGCCGGAAGCTGCGGGCTTGAAGA
GACGCCAGCCGTTCCCCGCCTGGAACGTTATCGAGGACATCGAAAAGAAG
GCCGATGCGATCGCTAAAGAAGCGAGCCGAGAGTTCGATGTTGCAAGCCA
GAAAGCTCAAGCCAAAACCGGCAAGATCGAGCCATGGACTCCCAAGTACT
ATGCGGCTTGCACGGTTGGAGGAATGCTTGCTTGCGTAAGTGAATGTTCC
ATTCTGCTAACGAGCGCTGTATAGCGACTTCTGCATACTAATGTCTTGGC
TGATCCTAGGGTCTCACCCATACCGCTGTGACGCCTCTGGATTTGATCAA
ATGCCGTCGTCAGGTCGATCCTCTGCTGTACAAGAGTAATGCAGAGGCAT
TCCGTACAATTCGCGGTGCAGAGGGTCTCCGAGGAGTTTTCACCGGTTGG
GGTCCAACTTTCTTTGGATATAGTGTAAGTCAAGACCGAACCGTATGCGC
CGCATAGACTAATTGGACCCAAGGCCCAAGGAGCGTTCAAATATGGTGGC
TATGAGTTCTTCAAGAAGTTCTACAGTGATCTTGTCGGAGTTGAGAACGC
GGCTCGGTGGAAGACATCTCTGTACTTGACCGCCAGTGCGTCGGCGGAGC
TTATCGCTGATGTCGCCCTGTGTCCGTTCGAGGCCGTCAAGGTGCGCATG
CAGACGACTATTCCACCTGATATTCGATCAACCTTCACGGGTATCTCTAG
CGTTGTTAACAAGGAAGGTGTGGCTGGGTAAGTGCTGCTAATGCAAGCCG
CCAATGCCTGGTAGCTGACTGCAGCAGTCTGTACAAGGGTCTTTACCCTC
TCTGGGGTCGACAGATTCCGTACACCATGATGAAGTTTGCGTCTTTCGAA
ACAATTGTCGAGATGATTTACAACACCCTTCCGGGTCAAAAGTCTGACTA
CAACAAGGGCGCGCAGACCGCTGTTGCCTTCACCGGTGGTTACCTGGCAG
GTATCCTTTGCGCCGTCGTATCGCACCCAGCGGATGTCATGGTCAGTAAG
TTGAATGCGAACCGCCAGGCTGGAGAGGCATTTGGAGCAGCGATGAGCCG
GATCTACAAGGACATTGGCTTCGGGGGTCTCTGGAACGGCCTTCCCGTCC
GTATCGTCATGATCGGCACCTTGGTAAGTGTATCGGTATCTGTCCTTCAG
ATGATAGCTAACTTGCTCTCCCCTCTAGACCGGACTGCAGTGGATGATGT
ATGTGTTACTTCAGATCTCCAGTATACCCCTCTCGATCAATAGCGGCTGA
CGTTTTGCAGTTATGATTCGTTCAAGATCTTCATGGGTCTTCCCACGACT
GGCGGTGGTCCTCCTGCAGAGAAGAAGTAATCTGGAGACGATTGTGCCGC
CGAGAGCTTAGATCCTTGCCTGACAAGGAGGGTCGATTACTCCGTAGAAT
GTAGAATACATTGTGGTGGCAGTAGTATGCAGGCGGGGAGGGTGGGGTAG
TACCGTGCCTGATTTCGTCTCTGGCTTTCTTCATATTCGAGTGAGGAAAA
TTTAGTGTTTTTTGTGCAATGATGAACTCCCTTTGTCTTTTCATGAACCA
CATTTGATTGAACCCCTGAGCCGAGGCCGGTGATAAAAGCAGCTGAACTG
ATAACTACAACTGGTAGAGATAACATGAAGTTACTCATTCCTTAGTAACA
ATTGGCGGGCCCCAAAGTCGTTAGTCACGCCTCGGACCAATCCGGACAAG
CATCTTATCAGCGCGTCGACGTCATCGGACGCCGTCCCGATCGT back to topCoding sequence (CDS) from alignment at ch4:3223334..3225427- >KJC3_005612-T1 ID=KJC3_005612-T1|Name=KJC3_005612-T1|organism=Aspergillus niger KJC3|type=CDS|length=6840bp|location=Sequence derived from alignment at ch4:3223334..3225427- (Aspergillus niger KJC3)
TTATGATTCGTTCAAGATCTTCATGGGTCTTCCCACGACTGGCGGTGGTC
CTCCTGCAGAGAAGAAGTAAACCGGACTGCAGTGGATGATTCTGTACAAG
GGTCTTTACCCTCTCTGGGGTCGACAGATTCCGTACACCATGATGAAGTT
TGCGTCTTTCGAAACAATTGTCGAGATGATTTACAACACCCTTCCGGGTC
AAAAGTCTGACTACAACAAGGGCGCGCAGACCGCTGTTGCCTTCACCGGT
GGTTACCTGGCAGGTATCCTTTGCGCCGTCGTATCGCACCCAGCGGATGT
CATGGTCAGTAAGTTGAATGCGAACCGCCAGGCTGGAGAGGCATTTGGAG
CAGCGATGAGCCGGATCTACAAGGACATTGGCTTCGGGGGTCTCTGGAAC
GGCCTTCCCGTCCGTATCGTCATGATCGGCACCTTGGCCCAAGGAGCGTT
CAAATATGGTGGCTATGAGTTCTTCAAGAAGTTCTACAGTGATCTTGTCG
GAGTTGAGAACGCGGCTCGGTGGAAGACATCTCTGTACTTGACCGCCAGT
GCGTCGGCGGAGCTTATCGCTGATGTCGCCCTGTGTCCGTTCGAGGCCGT
CAAGGTGCGCATGCAGACGACTATTCCACCTGATATTCGATCAACCTTCA
CGGGTATCTCTAGCGTTGTTAACAAGGAAGGTGTGGCTGGGGTCTCACCC
ATACCGCTGTGACGCCTCTGGATTTGATCAAATGCCGTCGTCAGGTCGAT
CCTCTGCTGTACAAGAGTAATGCAGAGGCATTCCGTACAATTCGCGGTGC
AGAGGGTCTCCGAGGAGTTTTCACCGGTTGGGGTCCAACTTTCTTTGGAT
ATAGTATGTTTCCTTCTGAAGGGGATATCGCTCGCGCCTTTGCTTCCCAA
AGCCCTCTGGGCCAACCTCAGCAGATCCAACAGCCGGAAGCTGCGGGCTT
GAAGAGACGCCAGCCGTTCCCCGCCTGGAACGTTATCGAGGACATCGAAA
AGAAGGCCGATGCGATCGCTAAAGAAGCGAGCCGAGAGTTCGATGTTGCA
AGCCAGAAAGCTCAAGCCAAAACCGGCAAGATCGAGCCATGGACTCCCAA
GTACTATGCGGCTTGCACGGTTGGAGGAATGCTTGCTTGCTTATGATTCG
TTCAAGATCTTCATGGGTCTTCCCACGACTGGCGGTGGTCCTCCTGCAGA
GAAGAAGTAAACCGGACTGCAGTGGATGATTCTGTACAAGGGTCTTTACC
CTCTCTGGGGTCGACAGATTCCGTACACCATGATGAAGTTTGCGTCTTTC
GAAACAATTGTCGAGATGATTTACAACACCCTTCCGGGTCAAAAGTCTGA
CTACAACAAGGGCGCGCAGACCGCTGTTGCCTTCACCGGTGGTTACCTGG
CAGGTATCCTTTGCGCCGTCGTATCGCACCCAGCGGATGTCATGGTCAGT
AAGTTGAATGCGAACCGCCAGGCTGGAGAGGCATTTGGAGCAGCGATGAG
CCGGATCTACAAGGACATTGGCTTCGGGGGTCTCTGGAACGGCCTTCCCG
TCCGTATCGTCATGATCGGCACCTTGGCCCAAGGAGCGTTCAAATATGGT
GGCTATGAGTTCTTCAAGAAGTTCTACAGTGATCTTGTCGGAGTTGAGAA
CGCGGCTCGGTGGAAGACATCTCTGTACTTGACCGCCAGTGCGTCGGCGG
AGCTTATCGCTGATGTCGCCCTGTGTCCGTTCGAGGCCGTCAAGGTGCGC
ATGCAGACGACTATTCCACCTGATATTCGATCAACCTTCACGGGTATCTC
TAGCGTTGTTAACAAGGAAGGTGTGGCTGGGGTCTCACCCATACCGCTGT
GACGCCTCTGGATTTGATCAAATGCCGTCGTCAGGTCGATCCTCTGCTGT
ACAAGAGTAATGCAGAGGCATTCCGTACAATTCGCGGTGCAGAGGGTCTC
CGAGGAGTTTTCACCGGTTGGGGTCCAACTTTCTTTGGATATAGTATGTT
TCCTTCTGAAGGGGATATCGCTCGCGCCTTTGCTTCCCAAAGCCCTCTGG
GCCAACCTCAGCAGATCCAACAGCCGGAAGCTGCGGGCTTGAAGAGACGC
CAGCCGTTCCCCGCCTGGAACGTTATCGAGGACATCGAAAAGAAGGCCGA
TGCGATCGCTAAAGAAGCGAGCCGAGAGTTCGATGTTGCAAGCCAGAAAG
CTCAAGCCAAAACCGGCAAGATCGAGCCATGGACTCCCAAGTACTATGCG
GCTTGCACGGTTGGAGGAATGCTTGCTTGCTTATGATTCGTTCAAGATCT
TCATGGGTCTTCCCACGACTGGCGGTGGTCCTCCTGCAGAGAAGAAGTAA
ACCGGACTGCAGTGGATGATTCTGTACAAGGGTCTTTACCCTCTCTGGGG
TCGACAGATTCCGTACACCATGATGAAGTTTGCGTCTTTCGAAACAATTG
TCGAGATGATTTACAACACCCTTCCGGGTCAAAAGTCTGACTACAACAAG
GGCGCGCAGACCGCTGTTGCCTTCACCGGTGGTTACCTGGCAGGTATCCT
TTGCGCCGTCGTATCGCACCCAGCGGATGTCATGGTCAGTAAGTTGAATG
CGAACCGCCAGGCTGGAGAGGCATTTGGAGCAGCGATGAGCCGGATCTAC
AAGGACATTGGCTTCGGGGGTCTCTGGAACGGCCTTCCCGTCCGTATCGT
CATGATCGGCACCTTGGCCCAAGGAGCGTTCAAATATGGTGGCTATGAGT
TCTTCAAGAAGTTCTACAGTGATCTTGTCGGAGTTGAGAACGCGGCTCGG
TGGAAGACATCTCTGTACTTGACCGCCAGTGCGTCGGCGGAGCTTATCGC
TGATGTCGCCCTGTGTCCGTTCGAGGCCGTCAAGGTGCGCATGCAGACGA
CTATTCCACCTGATATTCGATCAACCTTCACGGGTATCTCTAGCGTTGTT
AACAAGGAAGGTGTGGCTGGGGTCTCACCCATACCGCTGTGACGCCTCTG
GATTTGATCAAATGCCGTCGTCAGGTCGATCCTCTGCTGTACAAGAGTAA
TGCAGAGGCATTCCGTACAATTCGCGGTGCAGAGGGTCTCCGAGGAGTTT
TCACCGGTTGGGGTCCAACTTTCTTTGGATATAGTATGTTTCCTTCTGAA
GGGGATATCGCTCGCGCCTTTGCTTCCCAAAGCCCTCTGGGCCAACCTCA
GCAGATCCAACAGCCGGAAGCTGCGGGCTTGAAGAGACGCCAGCCGTTCC
CCGCCTGGAACGTTATCGAGGACATCGAAAAGAAGGCCGATGCGATCGCT
AAAGAAGCGAGCCGAGAGTTCGATGTTGCAAGCCAGAAAGCTCAAGCCAA
AACCGGCAAGATCGAGCCATGGACTCCCAAGTACTATGCGGCTTGCACGG
TTGGAGGAATGCTTGCTTGCTTATGATTCGTTCAAGATCTTCATGGGTCT
TCCCACGACTGGCGGTGGTCCTCCTGCAGAGAAGAAGTAAACCGGACTGC
AGTGGATGATTCTGTACAAGGGTCTTTACCCTCTCTGGGGTCGACAGATT
CCGTACACCATGATGAAGTTTGCGTCTTTCGAAACAATTGTCGAGATGAT
TTACAACACCCTTCCGGGTCAAAAGTCTGACTACAACAAGGGCGCGCAGA
CCGCTGTTGCCTTCACCGGTGGTTACCTGGCAGGTATCCTTTGCGCCGTC
GTATCGCACCCAGCGGATGTCATGGTCAGTAAGTTGAATGCGAACCGCCA
GGCTGGAGAGGCATTTGGAGCAGCGATGAGCCGGATCTACAAGGACATTG
GCTTCGGGGGTCTCTGGAACGGCCTTCCCGTCCGTATCGTCATGATCGGC
ACCTTGGCCCAAGGAGCGTTCAAATATGGTGGCTATGAGTTCTTCAAGAA
GTTCTACAGTGATCTTGTCGGAGTTGAGAACGCGGCTCGGTGGAAGACAT
CTCTGTACTTGACCGCCAGTGCGTCGGCGGAGCTTATCGCTGATGTCGCC
CTGTGTCCGTTCGAGGCCGTCAAGGTGCGCATGCAGACGACTATTCCACC
TGATATTCGATCAACCTTCACGGGTATCTCTAGCGTTGTTAACAAGGAAG
GTGTGGCTGGGGTCTCACCCATACCGCTGTGACGCCTCTGGATTTGATCA
AATGCCGTCGTCAGGTCGATCCTCTGCTGTACAAGAGTAATGCAGAGGCA
TTCCGTACAATTCGCGGTGCAGAGGGTCTCCGAGGAGTTTTCACCGGTTG
GGGTCCAACTTTCTTTGGATATAGTATGTTTCCTTCTGAAGGGGATATCG
CTCGCGCCTTTGCTTCCCAAAGCCCTCTGGGCCAACCTCAGCAGATCCAA
CAGCCGGAAGCTGCGGGCTTGAAGAGACGCCAGCCGTTCCCCGCCTGGAA
CGTTATCGAGGACATCGAAAAGAAGGCCGATGCGATCGCTAAAGAAGCGA
GCCGAGAGTTCGATGTTGCAAGCCAGAAAGCTCAAGCCAAAACCGGCAAG
ATCGAGCCATGGACTCCCAAGTACTATGCGGCTTGCACGGTTGGAGGAAT
GCTTGCTTGCTTATGATTCGTTCAAGATCTTCATGGGTCTTCCCACGACT
GGCGGTGGTCCTCCTGCAGAGAAGAAGTAAACCGGACTGCAGTGGATGAT
TCTGTACAAGGGTCTTTACCCTCTCTGGGGTCGACAGATTCCGTACACCA
TGATGAAGTTTGCGTCTTTCGAAACAATTGTCGAGATGATTTACAACACC
CTTCCGGGTCAAAAGTCTGACTACAACAAGGGCGCGCAGACCGCTGTTGC
CTTCACCGGTGGTTACCTGGCAGGTATCCTTTGCGCCGTCGTATCGCACC
CAGCGGATGTCATGGTCAGTAAGTTGAATGCGAACCGCCAGGCTGGAGAG
GCATTTGGAGCAGCGATGAGCCGGATCTACAAGGACATTGGCTTCGGGGG
TCTCTGGAACGGCCTTCCCGTCCGTATCGTCATGATCGGCACCTTGGCCC
AAGGAGCGTTCAAATATGGTGGCTATGAGTTCTTCAAGAAGTTCTACAGT
GATCTTGTCGGAGTTGAGAACGCGGCTCGGTGGAAGACATCTCTGTACTT
GACCGCCAGTGCGTCGGCGGAGCTTATCGCTGATGTCGCCCTGTGTCCGT
TCGAGGCCGTCAAGGTGCGCATGCAGACGACTATTCCACCTGATATTCGA
TCAACCTTCACGGGTATCTCTAGCGTTGTTAACAAGGAAGGTGTGGCTGG
GGTCTCACCCATACCGCTGTGACGCCTCTGGATTTGATCAAATGCCGTCG
TCAGGTCGATCCTCTGCTGTACAAGAGTAATGCAGAGGCATTCCGTACAA
TTCGCGGTGCAGAGGGTCTCCGAGGAGTTTTCACCGGTTGGGGTCCAACT
TTCTTTGGATATAGTATGTTTCCTTCTGAAGGGGATATCGCTCGCGCCTT
TGCTTCCCAAAGCCCTCTGGGCCAACCTCAGCAGATCCAACAGCCGGAAG
CTGCGGGCTTGAAGAGACGCCAGCCGTTCCCCGCCTGGAACGTTATCGAG
GACATCGAAAAGAAGGCCGATGCGATCGCTAAAGAAGCGAGCCGAGAGTT
CGATGTTGCAAGCCAGAAAGCTCAAGCCAAAACCGGCAAGATCGAGCCAT
GGACTCCCAAGTACTATGCGGCTTGCACGGTTGGAGGAATGCTTGCTTGC
TTATGATTCGTTCAAGATCTTCATGGGTCTTCCCACGACTGGCGGTGGTC
CTCCTGCAGAGAAGAAGTAAACCGGACTGCAGTGGATGATTCTGTACAAG
GGTCTTTACCCTCTCTGGGGTCGACAGATTCCGTACACCATGATGAAGTT
TGCGTCTTTCGAAACAATTGTCGAGATGATTTACAACACCCTTCCGGGTC
AAAAGTCTGACTACAACAAGGGCGCGCAGACCGCTGTTGCCTTCACCGGT
GGTTACCTGGCAGGTATCCTTTGCGCCGTCGTATCGCACCCAGCGGATGT
CATGGTCAGTAAGTTGAATGCGAACCGCCAGGCTGGAGAGGCATTTGGAG
CAGCGATGAGCCGGATCTACAAGGACATTGGCTTCGGGGGTCTCTGGAAC
GGCCTTCCCGTCCGTATCGTCATGATCGGCACCTTGGCCCAAGGAGCGTT
CAAATATGGTGGCTATGAGTTCTTCAAGAAGTTCTACAGTGATCTTGTCG
GAGTTGAGAACGCGGCTCGGTGGAAGACATCTCTGTACTTGACCGCCAGT
GCGTCGGCGGAGCTTATCGCTGATGTCGCCCTGTGTCCGTTCGAGGCCGT
CAAGGTGCGCATGCAGACGACTATTCCACCTGATATTCGATCAACCTTCA
CGGGTATCTCTAGCGTTGTTAACAAGGAAGGTGTGGCTGGGGTCTCACCC
ATACCGCTGTGACGCCTCTGGATTTGATCAAATGCCGTCGTCAGGTCGAT
CCTCTGCTGTACAAGAGTAATGCAGAGGCATTCCGTACAATTCGCGGTGC
AGAGGGTCTCCGAGGAGTTTTCACCGGTTGGGGTCCAACTTTCTTTGGAT
ATAGTATGTTTCCTTCTGAAGGGGATATCGCTCGCGCCTTTGCTTCCCAA
AGCCCTCTGGGCCAACCTCAGCAGATCCAACAGCCGGAAGCTGCGGGCTT
GAAGAGACGCCAGCCGTTCCCCGCCTGGAACGTTATCGAGGACATCGAAA
AGAAGGCCGATGCGATCGCTAAAGAAGCGAGCCGAGAGTTCGATGTTGCA
AGCCAGAAAGCTCAAGCCAAAACCGGCAAGATCGAGCCATGGACTCCCAA
GTACTATGCGGCTTGCACGGTTGGAGGAATGCTTGCTTGC back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005612-T1.utr3p1 | KJC3_005612-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005612-T1.utr5p1 | KJC3_005612-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR023395 |
| DBxref | InterPro:IPR018108 |
| DBxref | PFAM:PF00153 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3223334..3225427 - |
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