|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3516910..3519644- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005719-T1 ID=KJC3_005719-T1|Name=KJC3_005719-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2735bp|location=Sequence derived from alignment at ch4:3516910..3519644- (Aspergillus niger KJC3)
CGTAGATAGATATTATCATGTATACTAACTAACTACCCAGTATACCCAGG
ACTTTCGAAGATACAACTTCTTGCATCGCCCATCATCATCTAACTACGGG
TGTAATTTCCATAGCGCATCTTCACCCCCTGAAGAGACGAGAGAGAAATG
AGGACGCGGTGAAACGCAGGACTGCAGGCGGAAGGGATGCGCGTTGCGAC
CCGCCATCGCCCATCCACTTCCTCCTTCGCCCGCGAGCTTCGTGGTTTTA
GTGACCTTCACTAAGACCCGTTGGCTCTTAGCCATGCTTTCGCTCCCTCG
GCCAGACCTTTTTTTCCTCTCTCTCTCTCTCCCAGTTTGCATTTTTATTC
GATTTGATTTGATTTGATTACACTCCTTCTCTCTCTTGGCCGTGCTGCTT
CCCGGCCCGTTTCTTTCTTCTTTTCTCTTCTCCCTGACCTTCTTCTCTTT
CCTCTCCTCCCTTTTCTGCCTCCAACGACGAACGTTGTTTATGCGGCTGA
TTGGCCCCATACATTCTTTTTCTTATCAGCCAATTCCCCTTCCTCCTGCC
GCCCCCTGGAGGATTCATCTGTCTCACGGGCCCCTGATTGTTTGTTTCTG
TCCTTCTGGTCGACTCTCGAGGGTTTTGCCATGATTCTGTCGCTTCAGCT
TCTGTAACCAACTCCCCAGGCCCCGTTTGATCAGTCTCCATCCTCAGTAC
GCTGGTCCGTCATGGGGGATTCCCCGGGAACGGGCAGGGCGGGAATGGCT
CCGGAAACGTCCCAGACATTGCTGCAGCTGTCGTCGCCCGACCACATCAC
GCACCACCACCCAAACCCTCCCACTACTGATGAGCATGATCGAACTACCC
TTCAGTCGAAGCGATCCTCTCTGCCAGCACGTCCAAATGGTGCTGCTCGA
CACGCCAAACGACTGACCCTGAACTTCCCCATCAACATCCCGCCGCCCGC
CACCGTCGACCCTAGTGCGAGTGTTGCCTCCCCTGGATCCATGACGCCTG
TGACTCGTTCCTCCGCCTACCCCTCGCCGATCCCCCATCTCGGGGCTCCC
TTGGCCTTTGACGAACAAGATGATGGCTCCGGGCTGTTGACCGCCATCGC
CTCCCAGGAAAGAAGGGTGCTAGAGCTGCGGGAGGAGCTCCATCGTGCGG
AGACTGAGCTGGACTCATTGAAAAAGCAGTGGGCCTCGTCGGAGAGGACC
AAAAAGCGAGCGGAAATCAGCTATCGGGCAGAGCCTTTGATCCCGCTGCG
ATCGCCCGATCAGACTCCGGAGCGCTCGCATCGTCGAGACCCCAGTCTGA
GCGGCTCCGCGAGCCCCTCGCTAGCGCACGCACGACTCAGCCGGGAGCTG
GACCGCCGCCACAGTCTGCGCGCAGCTGCAACCCAAGGCACGACCGTCTC
GGCCAATGGACGGCGGGTGTTCCGAGGCTCTCACACTCGGACCCTGTCCT
TGCTGTCGCCGGTCTCGGTTTCTGGAGACGGCAGGGCCGCATCGGAGTCG
GAGACCAACTCGGTGAATGGTCGTATCGGCCGGTCTCCCCGGTCAGCCAC
TCTGCCGTCGTCTGTGGAGCGCAGTGCAGGTTCGGGCGACTCTTCCAAGC
CCACCGAGGACATGATCGCTCAGTGGCGAAACACCATGCCTCCTCCGTCT
CGCGAGGCGCTGATGCGCACCGGCAAGCAAATGGCGTCGGACCTGCGCGA
GGGACTCTGGACATTCTTGGAGGATATCCGACAAGCAACCGTAGGAGAAG
AGGGCATCAGTGCGACCGAATCCCGCGGAGTGCCGCCCGTGCGCAAGCGG
GATTCATCTAGCTCGACATCGCGAAGCAGAGACCGGTTATCCATGCAGGG
GGGCAGAACGTCACGCGCGGGGACGAAATATTCTGGTAAAGACTCCAACT
CGGCGGACATTGACGCGTCGTTCTGGAGTGAATTCGGCATTGATACAGCT
GGGCAGAAGTCCCGGAGCGCTCGCGGAGCCTCCAGTACCCCAAGCGGGCG
GATCGAACAGGGCGACTCCCACATCCCCGATGTTGAAGACAACTGGGAAT
GGGACTCGCCGAAGAAGACACACACGCCGTCCTCAAGCCGCTCCACATTG
GAGTCGAAGCAGGACCAGTCCCCGATGACGCAGAACAGCAGTCCACGTAC
AAGTACCAGGTAGGTTTTACTCAAGTGTTTTGATATCTTTTCGTAGGCAG
TTGTCCTCGTCTTTGTCCTTTACAGTGATACGCTGACTGGCACTAGTTTT
GGCGACTGGCGCGCCCTGCACGAGTCCATTGTTCCCGATCCCAGCGTATC
CGACGGTATCCCTTGGCCGGCCATTACCAAGCTGGCGCCCTCGAAGTTGA
CCCGGACTGCGTCCAATCTGATGGCCGAATGGGAGCGGAGTCTCTCCCCC
GAGCGAAAGGAACCCTATTCGCCGATCGACAAGGACGACAAGCGTGATTG
ATTGCCCAATTACTTTGAAAGTGCCGTTCGATTACGGCCTTTCGATTATT
ATTATTCTTCCAATGCTATTGTAAATATGGACACGATATGTGCGACCAAA
CTGAGACCGACGGATTAACGCAGGGTTATGAATGTTGCAATACCCTTTAC
GATGAGCGTTGATTTCACTCTTTATCTTCTTGCATGTTTTAGAATGTATT
TATGTTATCAGCACTGGCTTGTAAAATACGTTACATCTGGTAATTTCCTT
TGTATCAGTAGCAACCTTGACTATTTTATTTGACG back to topCoding sequence (CDS) from alignment at ch4:3516910..3519644- >KJC3_005719-T1 ID=KJC3_005719-T1|Name=KJC3_005719-T1|organism=Aspergillus niger KJC3|type=CDS|length=3306bp|location=Sequence derived from alignment at ch4:3516910..3519644- (Aspergillus niger KJC3)
TTTTGGCGACTGGCGCGCCCTGCACGAGTCCATTGTTCCCGATCCCAGCG
TATCCGACGGTATCCCTTGGCCGGCCATTACCAAGCTGGCGCCCTCGAAG
TTGACCCGGACTGCGTCCAATCTGATGGCCGAATGGGAGCGGAGTCTCTC
CCCCGAGCGAAAGGAACCCTATTCGCCGATCGACAAGGACGACAAGCGTG
ATTGAATGGGGGATTCCCCGGGAACGGGCAGGGCGGGAATGGCTCCGGAA
ACGTCCCAGACATTGCTGCAGCTGTCGTCGCCCGACCACATCACGCACCA
CCACCCAAACCCTCCCACTACTGATGAGCATGATCGAACTACCCTTCAGT
CGAAGCGATCCTCTCTGCCAGCACGTCCAAATGGTGCTGCTCGACACGCC
AAACGACTGACCCTGAACTTCCCCATCAACATCCCGCCGCCCGCCACCGT
CGACCCTAGTGCGAGTGTTGCCTCCCCTGGATCCATGACGCCTGTGACTC
GTTCCTCCGCCTACCCCTCGCCGATCCCCCATCTCGGGGCTCCCTTGGCC
TTTGACGAACAAGATGATGGCTCCGGGCTGTTGACCGCCATCGCCTCCCA
GGAAAGAAGGGTGCTAGAGCTGCGGGAGGAGCTCCATCGTGCGGAGACTG
AGCTGGACTCATTGAAAAAGCAGTGGGCCTCGTCGGAGAGGACCAAAAAG
CGAGCGGAAATCAGCTATCGGGCAGAGCCTTTGATCCCGCTGCGATCGCC
CGATCAGACTCCGGAGCGCTCGCATCGTCGAGACCCCAGTCTGAGCGGCT
CCGCGAGCCCCTCGCTAGCGCACGCACGACTCAGCCGGGAGCTGGACCGC
CGCCACAGTCTGCGCGCAGCTGCAACCCAAGGCACGACCGTCTCGGCCAA
TGGACGGCGGGTGTTCCGAGGCTCTCACACTCGGACCCTGTCCTTGCTGT
CGCCGGTCTCGGTTTCTGGAGACGGCAGGGCCGCATCGGAGTCGGAGACC
AACTCGGTGAATGGTCGTATCGGCCGGTCTCCCCGGTCAGCCACTCTGCC
GTCGTCTGTGGAGCGCAGTGCAGGTTCGGGCGACTCTTCCAAGCCCACCG
AGGACATGATCGCTCAGTGGCGAAACACCATGCCTCCTCCGTCTCGCGAG
GCGCTGATGCGCACCGGCAAGCAAATGGCGTCGGACCTGCGCGAGGGACT
CTGGACATTCTTGGAGGATATCCGACAAGCAACCGTAGGAGAAGAGGGCA
TCAGTGCGACCGAATCCCGCGGAGTGCCGCCCGTGCGCAAGCGGGATTCA
TCTAGCTCGACATCGCGAAGCAGAGACCGGTTATCCATGCAGGGGGGCAG
AACGTCACGCGCGGGGACGAAATATTCTGGTAAAGACTCCAACTCGGCGG
ACATTGACGCGTCGTTCTGGAGTGAATTCGGCATTGATACAGCTGGGCAG
AAGTCCCGGAGCGCTCGCGGAGCCTCCAGTACCCCAAGCGGGCGGATCGA
ACAGGGCGACTCCCACATCCCCGATGTTGAAGACAACTGGGAATGGGACT
CGCCGAAGAAGACACACACGCCGTCCTCAAGCCGCTCCACATTGGAGTCG
AAGCAGGACCAGTCCCCGATGACGCAGAACAGCAGTCCACGTACAAGTAC
CAGTTTTGGCGACTGGCGCGCCCTGCACGAGTCCATTGTTCCCGATCCCA
GCGTATCCGACGGTATCCCTTGGCCGGCCATTACCAAGCTGGCGCCCTCG
AAGTTGACCCGGACTGCGTCCAATCTGATGGCCGAATGGGAGCGGAGTCT
CTCCCCCGAGCGAAAGGAACCCTATTCGCCGATCGACAAGGACGACAAGC
GTGATTGAATGGGGGATTCCCCGGGAACGGGCAGGGCGGGAATGGCTCCG
GAAACGTCCCAGACATTGCTGCAGCTGTCGTCGCCCGACCACATCACGCA
CCACCACCCAAACCCTCCCACTACTGATGAGCATGATCGAACTACCCTTC
AGTCGAAGCGATCCTCTCTGCCAGCACGTCCAAATGGTGCTGCTCGACAC
GCCAAACGACTGACCCTGAACTTCCCCATCAACATCCCGCCGCCCGCCAC
CGTCGACCCTAGTGCGAGTGTTGCCTCCCCTGGATCCATGACGCCTGTGA
CTCGTTCCTCCGCCTACCCCTCGCCGATCCCCCATCTCGGGGCTCCCTTG
GCCTTTGACGAACAAGATGATGGCTCCGGGCTGTTGACCGCCATCGCCTC
CCAGGAAAGAAGGGTGCTAGAGCTGCGGGAGGAGCTCCATCGTGCGGAGA
CTGAGCTGGACTCATTGAAAAAGCAGTGGGCCTCGTCGGAGAGGACCAAA
AAGCGAGCGGAAATCAGCTATCGGGCAGAGCCTTTGATCCCGCTGCGATC
GCCCGATCAGACTCCGGAGCGCTCGCATCGTCGAGACCCCAGTCTGAGCG
GCTCCGCGAGCCCCTCGCTAGCGCACGCACGACTCAGCCGGGAGCTGGAC
CGCCGCCACAGTCTGCGCGCAGCTGCAACCCAAGGCACGACCGTCTCGGC
CAATGGACGGCGGGTGTTCCGAGGCTCTCACACTCGGACCCTGTCCTTGC
TGTCGCCGGTCTCGGTTTCTGGAGACGGCAGGGCCGCATCGGAGTCGGAG
ACCAACTCGGTGAATGGTCGTATCGGCCGGTCTCCCCGGTCAGCCACTCT
GCCGTCGTCTGTGGAGCGCAGTGCAGGTTCGGGCGACTCTTCCAAGCCCA
CCGAGGACATGATCGCTCAGTGGCGAAACACCATGCCTCCTCCGTCTCGC
GAGGCGCTGATGCGCACCGGCAAGCAAATGGCGTCGGACCTGCGCGAGGG
ACTCTGGACATTCTTGGAGGATATCCGACAAGCAACCGTAGGAGAAGAGG
GCATCAGTGCGACCGAATCCCGCGGAGTGCCGCCCGTGCGCAAGCGGGAT
TCATCTAGCTCGACATCGCGAAGCAGAGACCGGTTATCCATGCAGGGGGG
CAGAACGTCACGCGCGGGGACGAAATATTCTGGTAAAGACTCCAACTCGG
CGGACATTGACGCGTCGTTCTGGAGTGAATTCGGCATTGATACAGCTGGG
CAGAAGTCCCGGAGCGCTCGCGGAGCCTCCAGTACCCCAAGCGGGCGGAT
CGAACAGGGCGACTCCCACATCCCCGATGTTGAAGACAACTGGGAATGGG
ACTCGCCGAAGAAGACACACACGCCGTCCTCAAGCCGCTCCACATTGGAG
TCGAAGCAGGACCAGTCCCCGATGACGCAGAACAGCAGTCCACGTACAAG
TACCAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005719-T1.utr3p1 | KJC3_005719-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005719-T1.utr5p1 | KJC3_005719-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR025122 |
| DBxref | PFAM:PF13257 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3516910..3519644 - |
|
