|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3763592..3766360- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005796-T1 ID=KJC3_005796-T1|Name=KJC3_005796-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2769bp|location=Sequence derived from alignment at ch4:3763592..3766360- (Aspergillus niger KJC3)
GTGTTCAGTTCAGTTCGCCTTTTCCTCCCCCCTTCTTCCCATCCTCTCTC
TTTTTCCCCCAAATTTCCAAATGCCCGACCGTCTGGAGCCCCACTGGCTC
CAGTATCTCGCCGCCTGCTCTTTTGGTTCTCCCTCATTTGCCCCCCCATA
CTTAATAATCCGATCATCATCTAGTTAACTTACTAAGTAACTAGTGGTCA
CTACCACTGCTCTCCGTTCAACTACTAATTACTACCTATTGCTACGGCTA
CTAATCGCCAGTGCTTCGGCATCCTTTTCGACTCCTCGCTCACCCTTTCG
GCTTCCATTGATTTGCTCCATCGCCCGTTCATCTTCTCTATCGATATTCT
GATTCCAGAGACTTCTTTCTTCTTGCGCCACTGGCTTCTGCTAGATGGTA
TAATATCGACATCCGCTGTCTGACCTCGATTTTATCTGGTCGGACACCTC
CGCCCCTCACTCACCTTCATGTCGCTACCCCACACCGTCTACTCGTATCT
AGCATTATCTCCTACACATGGAGGTTCATACGTTGGTTTGTGCGCCGGGG
AAGCCTCTTCCCCCCGCACAACCCCAGCTTTCCGCAGCCGCTGCGCCTGA
GAAGAGAAAGCGGGTCCGTCGATGGCATCACCGAGGATTTACAGGCTGTT
CGACATGTCGTCGACGCCACGTCCGCTGCGACGAAGCATCGCCATCCTGC
AAAAACTGTACACGCCTGGGTCTTGAGTGTGATGGCACTCAAGGTCGCAT
GACCTTCAAAGTCTACGGACCGCCGCAAGCGGATTCGTCTCCCGCCACTG
CCAAGAAATGCGACAAAAAGATCAAGATCGAAGGGGACAATAAAGTGAAG
CAGGAACCGGCAGGAGACGAGAATGAGTCCTTCGAAACCTTAATTGTGTC
TCCAACGACAGTGTCCGACATGAAGCCTATCAAATATCGCTTCCAAGAAC
CCATTTCTCCTGCCGAGTTTTTGTCGTCGTCTCTGGACTGCGTCGAAGGC
CGGTATTACACTCATTTCGTTGACCAGGTCTCTACTTTACTCCTCATCTA
TGATAATTCGAACAATATCAACCCCTACCGAAGATTCTTCCCTGAGCTCG
CTCGATCCTCAACGTCAATGGCCAGCGCTATGCAAGCCATGGGTGCGTTG
CACCTTGCCAATACATCCAGAGGACAACAGCGAAACAAGCACTTCCAACA
AGCCATGAGCAATTATGGCGAGGTTGTCAAGTCATTCAGAACCCGATATA
CAGACCCCAATCACACCGTGCGGCTAACTGATTTCGCCACCTGCCTTCTA
CTGTCACTGTTTGAGGTGAGTCCCTTGTTGTTCACTCGGGCCTAGAGAGC
ACATTGCTAATTTATCAGATGATGGATTCTCAACATCACAATTGGGCTAT
CCATCTGAAGGGTGCCCGAGAAATCTATCGAATACTTTTCACCCCCAATG
ACGACCCCGACAAAGAAGCCAAGCGCCTCGCTGAAATCAATCACCCACTT
CGACCCTTCCTCGTATCACTGCTCTCATACTTAGACGTTGCGGGTGCCTG
TGCCACCAGCGAGGGAACCGTGGTGGAAGGCAGCTACTGGACAACACACG
GAGGTGGCTGGGAATACAATCTAGGTACACCAAGCCTATCGGCCGAACAA
CCCGCTTACAGTCACCACCTCGTGGAATTGCGCCAATGTTGGTCTGCTAT
GATGGAGATTCAAGCAGCCATCAGTGCCTTTGGAAAAGCGAAACAAGATG
GTCTGATGCCCTTCGAACAACAAGACCTGGCTTATCACGAGCTATTACAG
CGGCTGGTGCAATGGCGTCTGAACGCACCGCAGGCACTGCAGACTTTAGG
CGAACTAGACGATGAGAGCTTGCAACAATATCCCTACCCCGATGTCCTTG
AGTATGCCGGATGTATCGAAGCATATGAGAAGGCCACCAATATATTCCTA
CATCGGGTTGGAGCGGCGGGGCGTCCTGATATACAGCCTCAAAGGGTGCT
GTTAGACATGCTTGCTACTCGAATTTTGGCGTTGATCGGAAAGCTCGCCA
AGGACGTGGGCCAATTGGCGGTACTATGGCCACTCTTCACAGCTGGCCGA
GAATCACGGAACTTGAGTGAGCAGAAATTTGTGCGGCAGACCATGACTGA
TCTCCAGCGGTTCGGGTTCAAGGTATGTCAAACACGGATATCATCAATGA
TCGAACGAATGCTAACAGGTTTGCAGAACGTTGACAAGGCCCTCGAGGAA
CTGGAACAAGCGTGGTTTAAGCAGCGAGCTTTCCCAGAAGGCTGGATTGA
TACCATGGACGATATACGCTCTTCTATCCTACTCCCTTGAACATAGCTAC
TTCGTGGCTCGCTTTCAACCTTTACTGCGATTCACGGCCGCTCTGAGCCA
TCTTCATATGGTACCTGACGATTTATTATGGGCATAAGTTACACGGAACG
GGGAAAACACGGAGTCCGAGTGTCGTTGTAATACTGGCGTTATATTGGGG
AACTAAGGTGTTCGGCTGGGCTGGACCCTTAGATCTGAATTTGAGGAGCG
TGAGGGACTTTCTCCTGCAAATGATTGAATATTCTTGCTGTTATGGGTGA
TCGATTTGTGTTTATATTTATTTTTCTCTTACTGGGGGAGTTGGATTACT
GTTGTACAGATACCGAAAGGGCTTACTGAAAGTCATATATAGAACTACGG
CTTGACACCCGTGAGAGTTATCTGCTCTTCACATTGCTTGAAATAGAACA
AAATTACTATCTGATATCA back to topCoding sequence (CDS) from alignment at ch4:3763592..3766360- >KJC3_005796-T1 ID=KJC3_005796-T1|Name=KJC3_005796-T1|organism=Aspergillus niger KJC3|type=CDS|length=5148bp|location=Sequence derived from alignment at ch4:3763592..3766360- (Aspergillus niger KJC3)
AACGTTGACAAGGCCCTCGAGGAACTGGAACAAGCGTGGTTTAAGCAGCG
AGCTTTCCCAGAAGGCTGGATTGATACCATGGACGATATACGCTCTTCTA
TCCTACTCCCTTGAATGATGGATTCTCAACATCACAATTGGGCTATCCAT
CTGAAGGGTGCCCGAGAAATCTATCGAATACTTTTCACCCCCAATGACGA
CCCCGACAAAGAAGCCAAGCGCCTCGCTGAAATCAATCACCCACTTCGAC
CCTTCCTCGTATCACTGCTCTCATACTTAGACGTTGCGGGTGCCTGTGCC
ACCAGCGAGGGAACCGTGGTGGAAGGCAGCTACTGGACAACACACGGAGG
TGGCTGGGAATACAATCTAGGTACACCAAGCCTATCGGCCGAACAACCCG
CTTACAGTCACCACCTCGTGGAATTGCGCCAATGTTGGTCTGCTATGATG
GAGATTCAAGCAGCCATCAGTGCCTTTGGAAAAGCGAAACAAGATGGTCT
GATGCCCTTCGAACAACAAGACCTGGCTTATCACGAGCTATTACAGCGGC
TGGTGCAATGGCGTCTGAACGCACCGCAGGCACTGCAGACTTTAGGCGAA
CTAGACGATGAGAGCTTGCAACAATATCCCTACCCCGATGTCCTTGAGTA
TGCCGGATGTATCGAAGCATATGAGAAGGCCACCAATATATTCCTACATC
GGGTTGGAGCGGCGGGGCGTCCTGATATACAGCCTCAAAGGGTGCTGTTA
GACATGCTTGCTACTCGAATTTTGGCGTTGATCGGAAAGCTCGCCAAGGA
CGTGGGCCAATTGGCGGTACTATGGCCACTCTTCACAGCTGGCCGAGAAT
CACGGAACTTGAGTGAGCAGAAATTTGTGCGGCAGACCATGACTGATCTC
CAGCGGTTCGGGTTCAAGATGGAGGTTCATACGTTGGTTTGTGCGCCGGG
GAAGCCTCTTCCCCCCGCACAACCCCAGCTTTCCGCAGCCGCTGCGCCTG
AGAAGAGAAAGCGGGTCCGTCGATGGCATCACCGAGGATTTACAGGCTGT
TCGACATGTCGTCGACGCCACGTCCGCTGCGACGAAGCATCGCCATCCTG
CAAAAACTGTACACGCCTGGGTCTTGAGTGTGATGGCACTCAAGGTCGCA
TGACCTTCAAAGTCTACGGACCGCCGCAAGCGGATTCGTCTCCCGCCACT
GCCAAGAAATGCGACAAAAAGATCAAGATCGAAGGGGACAATAAAGTGAA
GCAGGAACCGGCAGGAGACGAGAATGAGTCCTTCGAAACCTTAATTGTGT
CTCCAACGACAGTGTCCGACATGAAGCCTATCAAATATCGCTTCCAAGAA
CCCATTTCTCCTGCCGAGTTTTTGTCGTCGTCTCTGGACTGCGTCGAAGG
CCGGTATTACACTCATTTCGTTGACCAGGTCTCTACTTTACTCCTCATCT
ATGATAATTCGAACAATATCAACCCCTACCGAAGATTCTTCCCTGAGCTC
GCTCGATCCTCAACGTCAATGGCCAGCGCTATGCAAGCCATGGGTGCGTT
GCACCTTGCCAATACATCCAGAGGACAACAGCGAAACAAGCACTTCCAAC
AAGCCATGAGCAATTATGGCGAGGTTGTCAAGTCATTCAGAACCCGATAT
ACAGACCCCAATCACACCGTGCGGCTAACTGATTTCGCCACCTGCCTTCT
ACTGTCACTGTTTGAGAACGTTGACAAGGCCCTCGAGGAACTGGAACAAG
CGTGGTTTAAGCAGCGAGCTTTCCCAGAAGGCTGGATTGATACCATGGAC
GATATACGCTCTTCTATCCTACTCCCTTGAATGATGGATTCTCAACATCA
CAATTGGGCTATCCATCTGAAGGGTGCCCGAGAAATCTATCGAATACTTT
TCACCCCCAATGACGACCCCGACAAAGAAGCCAAGCGCCTCGCTGAAATC
AATCACCCACTTCGACCCTTCCTCGTATCACTGCTCTCATACTTAGACGT
TGCGGGTGCCTGTGCCACCAGCGAGGGAACCGTGGTGGAAGGCAGCTACT
GGACAACACACGGAGGTGGCTGGGAATACAATCTAGGTACACCAAGCCTA
TCGGCCGAACAACCCGCTTACAGTCACCACCTCGTGGAATTGCGCCAATG
TTGGTCTGCTATGATGGAGATTCAAGCAGCCATCAGTGCCTTTGGAAAAG
CGAAACAAGATGGTCTGATGCCCTTCGAACAACAAGACCTGGCTTATCAC
GAGCTATTACAGCGGCTGGTGCAATGGCGTCTGAACGCACCGCAGGCACT
GCAGACTTTAGGCGAACTAGACGATGAGAGCTTGCAACAATATCCCTACC
CCGATGTCCTTGAGTATGCCGGATGTATCGAAGCATATGAGAAGGCCACC
AATATATTCCTACATCGGGTTGGAGCGGCGGGGCGTCCTGATATACAGCC
TCAAAGGGTGCTGTTAGACATGCTTGCTACTCGAATTTTGGCGTTGATCG
GAAAGCTCGCCAAGGACGTGGGCCAATTGGCGGTACTATGGCCACTCTTC
ACAGCTGGCCGAGAATCACGGAACTTGAGTGAGCAGAAATTTGTGCGGCA
GACCATGACTGATCTCCAGCGGTTCGGGTTCAAGATGGAGGTTCATACGT
TGGTTTGTGCGCCGGGGAAGCCTCTTCCCCCCGCACAACCCCAGCTTTCC
GCAGCCGCTGCGCCTGAGAAGAGAAAGCGGGTCCGTCGATGGCATCACCG
AGGATTTACAGGCTGTTCGACATGTCGTCGACGCCACGTCCGCTGCGACG
AAGCATCGCCATCCTGCAAAAACTGTACACGCCTGGGTCTTGAGTGTGAT
GGCACTCAAGGTCGCATGACCTTCAAAGTCTACGGACCGCCGCAAGCGGA
TTCGTCTCCCGCCACTGCCAAGAAATGCGACAAAAAGATCAAGATCGAAG
GGGACAATAAAGTGAAGCAGGAACCGGCAGGAGACGAGAATGAGTCCTTC
GAAACCTTAATTGTGTCTCCAACGACAGTGTCCGACATGAAGCCTATCAA
ATATCGCTTCCAAGAACCCATTTCTCCTGCCGAGTTTTTGTCGTCGTCTC
TGGACTGCGTCGAAGGCCGGTATTACACTCATTTCGTTGACCAGGTCTCT
ACTTTACTCCTCATCTATGATAATTCGAACAATATCAACCCCTACCGAAG
ATTCTTCCCTGAGCTCGCTCGATCCTCAACGTCAATGGCCAGCGCTATGC
AAGCCATGGGTGCGTTGCACCTTGCCAATACATCCAGAGGACAACAGCGA
AACAAGCACTTCCAACAAGCCATGAGCAATTATGGCGAGGTTGTCAAGTC
ATTCAGAACCCGATATACAGACCCCAATCACACCGTGCGGCTAACTGATT
TCGCCACCTGCCTTCTACTGTCACTGTTTGAGAACGTTGACAAGGCCCTC
GAGGAACTGGAACAAGCGTGGTTTAAGCAGCGAGCTTTCCCAGAAGGCTG
GATTGATACCATGGACGATATACGCTCTTCTATCCTACTCCCTTGAATGA
TGGATTCTCAACATCACAATTGGGCTATCCATCTGAAGGGTGCCCGAGAA
ATCTATCGAATACTTTTCACCCCCAATGACGACCCCGACAAAGAAGCCAA
GCGCCTCGCTGAAATCAATCACCCACTTCGACCCTTCCTCGTATCACTGC
TCTCATACTTAGACGTTGCGGGTGCCTGTGCCACCAGCGAGGGAACCGTG
GTGGAAGGCAGCTACTGGACAACACACGGAGGTGGCTGGGAATACAATCT
AGGTACACCAAGCCTATCGGCCGAACAACCCGCTTACAGTCACCACCTCG
TGGAATTGCGCCAATGTTGGTCTGCTATGATGGAGATTCAAGCAGCCATC
AGTGCCTTTGGAAAAGCGAAACAAGATGGTCTGATGCCCTTCGAACAACA
AGACCTGGCTTATCACGAGCTATTACAGCGGCTGGTGCAATGGCGTCTGA
ACGCACCGCAGGCACTGCAGACTTTAGGCGAACTAGACGATGAGAGCTTG
CAACAATATCCCTACCCCGATGTCCTTGAGTATGCCGGATGTATCGAAGC
ATATGAGAAGGCCACCAATATATTCCTACATCGGGTTGGAGCGGCGGGGC
GTCCTGATATACAGCCTCAAAGGGTGCTGTTAGACATGCTTGCTACTCGA
ATTTTGGCGTTGATCGGAAAGCTCGCCAAGGACGTGGGCCAATTGGCGGT
ACTATGGCCACTCTTCACAGCTGGCCGAGAATCACGGAACTTGAGTGAGC
AGAAATTTGTGCGGCAGACCATGACTGATCTCCAGCGGTTCGGGTTCAAG
ATGGAGGTTCATACGTTGGTTTGTGCGCCGGGGAAGCCTCTTCCCCCCGC
ACAACCCCAGCTTTCCGCAGCCGCTGCGCCTGAGAAGAGAAAGCGGGTCC
GTCGATGGCATCACCGAGGATTTACAGGCTGTTCGACATGTCGTCGACGC
CACGTCCGCTGCGACGAAGCATCGCCATCCTGCAAAAACTGTACACGCCT
GGGTCTTGAGTGTGATGGCACTCAAGGTCGCATGACCTTCAAAGTCTACG
GACCGCCGCAAGCGGATTCGTCTCCCGCCACTGCCAAGAAATGCGACAAA
AAGATCAAGATCGAAGGGGACAATAAAGTGAAGCAGGAACCGGCAGGAGA
CGAGAATGAGTCCTTCGAAACCTTAATTGTGTCTCCAACGACAGTGTCCG
ACATGAAGCCTATCAAATATCGCTTCCAAGAACCCATTTCTCCTGCCGAG
TTTTTGTCGTCGTCTCTGGACTGCGTCGAAGGCCGGTATTACACTCATTT
CGTTGACCAGGTCTCTACTTTACTCCTCATCTATGATAATTCGAACAATA
TCAACCCCTACCGAAGATTCTTCCCTGAGCTCGCTCGATCCTCAACGTCA
ATGGCCAGCGCTATGCAAGCCATGGGTGCGTTGCACCTTGCCAATACATC
CAGAGGACAACAGCGAAACAAGCACTTCCAACAAGCCATGAGCAATTATG
GCGAGGTTGTCAAGTCATTCAGAACCCGATATACAGACCCCAATCACACC
GTGCGGCTAACTGATTTCGCCACCTGCCTTCTACTGTCACTGTTTGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005796-T1.utr3p1 | KJC3_005796-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005796-T1.utr5p1 | KJC3_005796-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3763592..3766360 - |
|
