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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3808864..3810451+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005808-T1 ID=KJC3_005808-T1|Name=KJC3_005808-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1588bp|location=Sequence derived from alignment at ch4:3808864..3810451+ (Aspergillus niger KJC3)
GACATAAAGTCCTAGTCTATCACCATCACCATCGTTATCATCTTTGTCAC
ATCACAGATTAATGCCAGCTACGAGATTTCTCGTGAATTGAAATCCACGA
TACGACCAGCAAATCTAATTAACTCAGAGGACATCCTGTGGCGAGCGTTC
GGTTTAGTCAATCAACCTGTCATCATCTGCTCAACTTACTCACACTGCTG
GGTTTGATTCATCTAGCCAGCTATCTGCCTAAAAATGGCTCCTTCACTCG
TACCTCTCGCTGAAATACCGACCGTTTCCCTTCTATACAAACTGAAGCGC
TTGGTCCCAGTCTCCTCCCCGCTCGCGCAGCCCTCCAAGGCCTTGAACGA
CACCATCTCTCTGATCCGCAACGACATCACCAAATTGGATGGAGTCGACT
GCATTGTGAATGCAGCCAACAAGTCTCTACTTGGAGGAGGTGGGGTAGAT
GGTGTCATTCACCGCGCCGCCGGACCTGGTTTGCTGGAGGAATGCCGCAC
CCTCGACGGCTGTGACACCGGTGATGCCAAAATAACCTCTGCGTACGAGC
TTCCATGCAGACGAGTCATTCATACCGTTGGGCCAATCTATGATCTTGAA
TTGCAGAGAGGGAGGGAGCGCCCGGAGACTTTGCTGCGCAGCTGCTATCG
TCGCAGTCTGGAGGTTGCCGTGGAGAACAACATGAAAAGCATTGCCTTTT
CAGCAATCAGCACAGGCGTGTACGGCTATCCAAGTGAATTGGCTGCCCGC
GCTGTTCTGGACGAGACACGGAAGTTCATGGAGAGTCCGAGCAACATCGG
GAAACTTGAACGGATCATTTTCTGCAACTTTGAGCGCAAGGATGAGATAG
CCTACGAGAAGTTTACTCCGTGAGTAACAATCTACCTCTGACTATACTGG
TGCCGTTGGTTTGACTAACAATATCAGCTTGTTCTTCCCTCCAGAAGATC
AGGGTGCCCCTAGCGCCAACAGCGACCGCGAATCTCAACTCGAATCTGAC
GGTGAGTCTTCGAAATCGGCGGAGATGCTCGCAGCCAAGCTTCCCGACCC
ACCGACCGTTGATCCTGCCTTGAACGGAGAACCGGAGACTAAGAAGCAAA
AGGTTAACGCGGACCAGACCGAACGTAGCGGTAGAAGTTACATGGAGGAT
TTCTCTATCAGATCTGACGATGACTGGGAGGAGGTTGACAAATCGGAAGA
TGGCCGCACAGAGAAGCTGGATGACGAGCCGGTTGAAGTTGATAGACCTC
CCTCTGCGACTGATGTGCAGAGCGTCCAGTCCAGTGGGATCATTGAGATG
GACGGTTCCAACGCTTCGGACAGTGTGCTGGCAAAGGACTGGTAGTCGCC
TTGCTCCAGCTGACCTTGAAATAGTTATGCATTTGAGTGATGCAACGTTT
GCTTCAAGTTTGGCGTTGAATGGATTCATTCATGGGTAGCGCTTATCGAC
ATGCAGCGCGGTTTTAATGAGTTTTCATCCTGGTATGTAGCACGTTTCTA
CGACTGGGCTTTCACTTCTCGGCAGCATTATTTTTGTCTCTTAAGTAGTA
CTTCCCCCTTAATGGTGACATGATTTATGTGGTATTCG back to topCoding sequence (CDS) from alignment at ch4:3808864..3810451+ >KJC3_005808-T1 ID=KJC3_005808-T1|Name=KJC3_005808-T1|organism=Aspergillus niger KJC3|type=CDS|length=2106bp|location=Sequence derived from alignment at ch4:3808864..3810451+ (Aspergillus niger KJC3)
ATGGCTCCTTCACTCGTACCTCTCGCTGAAATACCGACCGTTTCCCTTCT
ATACAAACTGAAGCGCTTGGTCCCAGTCTCCTCCCCGCTCGCGCAGCCCT
CCAAGGCCTTGAACGACACCATCTCTCTGATCCGCAACGACATCACCAAA
TTGGATGGAGTCGACTGCATTGTGAATGCAGCCAACAAGTCTCTACTTGG
AGGAGGTGGGGTAGATGGTGTCATTCACCGCGCCGCCGGACCTGGTTTGC
TGGAGGAATGCCGCACCCTCGACGGCTGTGACACCGGTGATGCCAAAATA
ACCTCTGCGTACGAGCTTCCATGCAGACGAGTCATTCATACCGTTGGGCC
AATCTATGATCTTGAATTGCAGAGAGGGAGGGAGCGCCCGGAGACTTTGC
TGCGCAGCTGCTATCGTCGCAGTCTGGAGGTTGCCGTGGAGAACAACATG
AAAAGCATTGCCTTTTCAGCAATCAGCACAGGCGTGTACGGCTATCCAAG
TGAATTGGCTGCCCGCGCTGTTCTGGACGAGACACGGAAGTTCATGGAGA
GTCCGAGCAACATCGGGAAACTTGAACGGATCATTTTCTGCAACTTTGAG
CGCAAGGATGAGATAGCCTACGAGAAGTTTACTCCCTTGTTCTTCCCTCC
AGAAGATCAGGGTGCCCCTAGCGCCAACAGCGACCGCGAATCTCAACTCG
AATCTGACGGTGAGTCTTCGAAATCGGCGGAGATGCTCGCAGCCAAGCTT
CCCGACCCACCGACCGTTGATCCTGCCTTGAACGGAGAACCGGAGACTAA
GAAGCAAAAGGTTAACGCGGACCAGACCGAACGTAGCGGTAGAAGTTACA
TGGAGGATTTCTCTATCAGATCTGACGATGACTGGGAGGAGGTTGACAAA
TCGGAAGATGGCCGCACAGAGAAGCTGGATGACGAGCCGGTTGAAGTTGA
TAGACCTCCCTCTGCGACTGATGTGCAGAGCGTCCAGTCCAGTGGGATCA
TTGAGATGGACGGTTCCAACGCTTCGGACAGTGTGCTGGCAAAGGACTGG
TAGATGGCTCCTTCACTCGTACCTCTCGCTGAAATACCGACCGTTTCCCT
TCTATACAAACTGAAGCGCTTGGTCCCAGTCTCCTCCCCGCTCGCGCAGC
CCTCCAAGGCCTTGAACGACACCATCTCTCTGATCCGCAACGACATCACC
AAATTGGATGGAGTCGACTGCATTGTGAATGCAGCCAACAAGTCTCTACT
TGGAGGAGGTGGGGTAGATGGTGTCATTCACCGCGCCGCCGGACCTGGTT
TGCTGGAGGAATGCCGCACCCTCGACGGCTGTGACACCGGTGATGCCAAA
ATAACCTCTGCGTACGAGCTTCCATGCAGACGAGTCATTCATACCGTTGG
GCCAATCTATGATCTTGAATTGCAGAGAGGGAGGGAGCGCCCGGAGACTT
TGCTGCGCAGCTGCTATCGTCGCAGTCTGGAGGTTGCCGTGGAGAACAAC
ATGAAAAGCATTGCCTTTTCAGCAATCAGCACAGGCGTGTACGGCTATCC
AAGTGAATTGGCTGCCCGCGCTGTTCTGGACGAGACACGGAAGTTCATGG
AGAGTCCGAGCAACATCGGGAAACTTGAACGGATCATTTTCTGCAACTTT
GAGCGCAAGGATGAGATAGCCTACGAGAAGTTTACTCCCTTGTTCTTCCC
TCCAGAAGATCAGGGTGCCCCTAGCGCCAACAGCGACCGCGAATCTCAAC
TCGAATCTGACGGTGAGTCTTCGAAATCGGCGGAGATGCTCGCAGCCAAG
CTTCCCGACCCACCGACCGTTGATCCTGCCTTGAACGGAGAACCGGAGAC
TAAGAAGCAAAAGGTTAACGCGGACCAGACCGAACGTAGCGGTAGAAGTT
ACATGGAGGATTTCTCTATCAGATCTGACGATGACTGGGAGGAGGTTGAC
AAATCGGAAGATGGCCGCACAGAGAAGCTGGATGACGAGCCGGTTGAAGT
TGATAGACCTCCCTCTGCGACTGATGTGCAGAGCGTCCAGTCCAGTGGGA
TCATTGAGATGGACGGTTCCAACGCTTCGGACAGTGTGCTGGCAAAGGAC
TGGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005808-T1.utr5p1 | KJC3_005808-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005808-T1.utr3p1 | KJC3_005808-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR043472 |
| DBxref | InterPro:IPR002589 |
| DBxref | PFAM:PF01661 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3808864..3810451 + |
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