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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:3889230..3890817- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005838-T1 ID=KJC3_005838-T1|Name=KJC3_005838-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1588bp|location=Sequence derived from alignment at ch4:3889230..3890817- (Aspergillus niger KJC3)
ATCTCAAGCGCGGAGCCAAAAGTTCAGCTTCGCGTTCGTCTCCCCGTCAC
CACCACCACGACAAGTGCCAGACGATTGATATACTCAAATCGATCTTTGC
AATATCAATCGCCCACCATGGCCCCCTCTCAGCTCCCCCCGATCTTCAAC
CCCACCTCCCAGGACATTGAGATGCTCCTCGCAGCTCAGTGCCACCTCGG
GTCCAAGAACCTCCAGTCTCACATGGAGCCTTACCTCTGGAAGACTCGCC
CCGACGGTGTCAATGTCATCAACATTGGCAAGACCTGGTATGTTGATCAG
GCGATATATTGCGCGCAACTCATTTAGGATCGCTGCCTAACACCGCGCGA
AAACTTAGGGAGAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGA
CAACCCGGCCGACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTG
CTGTCCTGAAGTTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGT
TTCACCCCCGGTAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCC
CCGCCTGATCATCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGG
AGGCCAGCTACGTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCC
CCCACCGACTTCGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCA
CGCCATCGGTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCC
GTGGTACCCTCGCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTG
TACTTCTACCGTGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGA
GAAGGTTGCCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCT
TCGCTGGTGAGAACTGGGATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGC
ACTGCTTTCGCTGCTGCTAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGC
CGAGGGTGGCGACTGGGCTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCT
GGGCTGAGGCCCAGCCCACCGAGGCTAAGTGGTAAACATCTGGACTTGGC
AACAAGGATTGACGAAACAATGGCGATTGGTTGAGGGTGACGAGGACCCC
TTGATCATCAAGGAACGACTTTTACGCGATTCCTTGCAATGAAAGAAAAC
AAAATCCCTTGTCGTGTCTATCCTAGTCTCAGTTCAGGTATTCCAAAAAG
ACAAAGAAGAAAAAACGAGGAAAAGAATCAACGGGAGCTTCACTACTTCA
AAACATCATCTTCCTACTTCTTCTTTCGTGGTATGCTACAGCGAAGTCTC
CTTCTGCAGTCCGTTTTCACGTTCCGCTTATGGTGCATCGGGGAGGAATT
GCATTGTCAATGATTGACTGGCGCTTATGAGGGAAAGATATCCAGTTGTT
CTCTTGCCTCAGTGAGCTTCTGGGGGAAAGCCCTGTGCTGTCAATTTCAC
AAGGTGGACTTAATCGTTACCTTGGTTTCTCCCTGTATGTTTATCATAGC
CGTAATCGAAAAGTGATGCTAGCTACCATTATTCTCCA back to topCoding sequence (CDS) from alignment at ch4:3889230..3890817- >KJC3_005838-T1 ID=KJC3_005838-T1|Name=KJC3_005838-T1|organism=Aspergillus niger KJC3|type=CDS|length=1794bp|location=Sequence derived from alignment at ch4:3889230..3890817- (Aspergillus niger KJC3)
GGAGAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGG
CCGACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTG
AAGTTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCC
CGGTAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGA
TCATCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGC
TACGTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGA
CTTCGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCG
GTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACC
CTCGCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTA
CCGTGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTG
CCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGT
GAGAACTGGGATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTT
CGCTGCTGCTAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTG
GCGACTGGGCTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAG
GCCCAGCCCACCGAGGCTAAGTGGTAAATGGCCCCCTCTCAGCTCCCCCC
GATCTTCAACCCCACCTCCCAGGACATTGAGATGCTCCTCGCAGCTCAGT
GCCACCTCGGGTCCAAGAACCTCCAGTCTCACATGGAGCCTTACCTCTGG
AAGACTCGCCCCGACGGTGTCAATGTCATCAACATTGGCAAGACCTGGGA
GAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGGCCG
ACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTGAAG
TTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCCCGG
TAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGATCA
TCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGCTAC
GTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGACTT
CGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCGGTC
TCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACCCTC
GCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTACCG
TGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTGCCA
GCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGTGAG
AACTGGGATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTTCGC
TGCTGCTAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTGGCG
ACTGGGCTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAGGCC
CAGCCCACCGAGGCTAAGTGGTAAATGGCCCCCTCTCAGCTCCCCCCGAT
CTTCAACCCCACCTCCCAGGACATTGAGATGCTCCTCGCAGCTCAGTGCC
ACCTCGGGTCCAAGAACCTCCAGTCTCACATGGAGCCTTACCTCTGGAAG
ACTCGCCCCGACGGTGTCAATGTCATCAACATTGGCAAGACCTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015935 | small ribosomal subunit |
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005838-T1.utr3p1 | KJC3_005838-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005838-T1.utr5p1 | KJC3_005838-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR023591 |
| DBxref | InterPro:IPR027498 |
| DBxref | InterPro:IPR018130 |
| DBxref | InterPro:IPR005707 |
| DBxref | InterPro:IPR032281 |
| DBxref | InterPro:IPR001865 |
| DBxref | PFAM:PF16122 |
| Product | structural constituent of ribosome |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:3889230..3890817 - |
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