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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4152215..4154396- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005921-T1 ID=KJC3_005921-T1|Name=KJC3_005921-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2182bp|location=Sequence derived from alignment at ch4:4152215..4154396- (Aspergillus niger KJC3)
AAAAGTGCGGGCCAGTGGAACGTTCCGGTGCTTATCGTGACTGCGGAATT
GCGGGGAAGAACTTGGATACGTTATCAACTCCTGCGGAGCATTGCCGCCA
GGTACAATAAGCTTCATCCACTTCACATCATTGTCTTCACGAGCAAAACT
GCACTTTAGTCTCTCCACTCGTTATCAATGTCAGATCCACAGCCAACCTC
TCGCCGCAGGTTCAAGACTCGCAGTGAGTATCTGAGCCATGGGATAATGA
CATTGCGGAAACTGACACGCCTCTGATGCCAGATGGCTGTCTAAGATGCA
AACAAAGGGTGGGTGTAACAAACCCAATTGTGTCTACCTCCTAATATCCA
GGCTAAGTTAGTTGACAGCGAATCAAATGCGACGAGACGCTTCCTGTGTG
TAATCAATGTACCCGCAAACGCTTCGAATGCCCGGGATACAAACGCCCAT
TGAAGTGGTCGTCCAAGTATGAGGTGGGGAGAAGTGGGAATAATAGCGCA
GTCCTGAGCTCCTCCGAGCAGGTGCTCCAAAGAATAGAGCCCGTCCAGCC
ATTACGACCCATCTTGTTCCAGTCCACAGTGCCGGACGACGCCACACGCT
CCCTGCCTGTGCAGACAGATGTCCAGCCCGCGCAGAATGAGACTGCTGTT
GGATCAGACCAGGCCTCAATCTCTGCGGCAAACAGTTCGCCACCGAAAGA
TATCTGGATCCCTTCGACTATGGTAGGTAATGATTGTGGTGAATTATGGA
CAGGAACCATATTAGCGGAACCGACTTTGTCTACCCAAAAAGACGATGAC
GCAGCTCTTCTCAGGCATTACTTTTCCAATGTTTGCCGAGTCAATTCGTG
CTTTGACTCCCACAAGAACTTCTTCCGTGCCGAAGTGGGATCCCTGATAA
GCTCCCGTCCTCTGATTCACTACTGCGTACTGTCCATGTCCGCCGCCCAT
CTGACGGCAAGACAAAGAGATATGTTGACGATCACGCTGCGGCACCGGAC
AGAAGCACTATCCTGCTTGAAAGCTAGAATCACACAGGGGGTTTTGACAC
AAGAAATAAACAATGGATCACCACTCGATAACGTTGCCGAGATCTTAATT
GGTAGCATACTCTTGGGCATGACAGAGGTACCCATTCTCAGTGCGTCCAT
GCCAGCCTTTTGATGTTAAGCTGATGGCCTTTCGTAGGGGTGGCATGATC
CCACTCAACTCGGGGTCACACATCTCCGTGGTGCACGCACGTTGTTCCGG
AAATGGATTACTACCGTCCCGGCATGCTGCCCTCGGACCAGAACTATGAT
TACGGGCATTATGTCCTACTGGGAAGCAGTCGCCTCGTTTGTACACAACC
AGTCCCTAGACTCGATATCCTACCTCATGCCATTCTCCTTCGAGACATGC
CATGTATACGTCAATCCATGGACAGGGATCTGCACGCCACTTTTTATACA
TTTGGCCCAGATTGGTATATTGACAAGGCAGCGATCGCTAGCCAGACAAT
TGCCTGTAGGCTTTTGGGGCCATGTAGGCCCCGACATGCTTGAACGGGCT
AAAGCCATTGAAGATGCGCTCCAATCCTACAGAACCCTATCAATCCACCA
GATAGAAGACACAGCTGATTCCCGGACGCCTGTCGACCACCTCCAGCGAA
TTGCAAGCATCTACCGGCTTGTAGGATTACTTCAGCTCTACATGACCTTC
CCTGAACTGCATGGAGCCCACTCTGTGGATTTTAGCCTAACCCACAGCAT
CTTGGGCCTGGCCACCAATGTGCTAACCACCATTGGCGTGCTTCCCCACA
CGTCTGGGGTTTACTGTTTGCTCACGATTCCATTGATTATCGCGGGTAGC
GCTTTGCAACTTCCTTGTTTCTCGTCGGACGTCCCCACTTCCATGTTGCA
GCAAGATACCTATCTCTTCTGGAGGAACTTCGTGCGGGAGAGGGTAAAGA
CCGTTCAGGAGATTGTAGGACTCGTTACCATTGGCCGCGCGCAGAAGATC
CTCGATAAGGTGTGGTTTCTAGCCGACATGCGGAGGGCCGCTGAGGATCC
TGACCAGGAATGGGAGTACATCCAGTGGACCGAGGTCATGAGCTCCGAGA
ATTTGGAGTCAATCTTTGGTTAGATCATGTATGGCACTAAACCTTATTGG
GGAAAATAGTGCGTCAACTGGAACAAGGAATG back to topCoding sequence (CDS) from alignment at ch4:4152215..4154396- >KJC3_005921-T1 ID=KJC3_005921-T1|Name=KJC3_005921-T1|organism=Aspergillus niger KJC3|type=CDS|length=7068bp|location=Sequence derived from alignment at ch4:4152215..4154396- (Aspergillus niger KJC3)
GGGTGGCATGATCCCACTCAACTCGGGGTCACACATCTCCGTGGTGCACG
CACGTTGTTCCGGAAATGGATTACTACCGTCCCGGCATGCTGCCCTCGGA
CCAGAACTATGATTACGGGCATTATGTCCTACTGGGAAGCAGTCGCCTCG
TTTGTACACAACCAGTCCCTAGACTCGATATCCTACCTCATGCCATTCTC
CTTCGAGACATGCCATGTATACGTCAATCCATGGACAGGGATCTGCACGC
CACTTTTTATACATTTGGCCCAGATTGGTATATTGACAAGGCAGCGATCG
CTAGCCAGACAATTGCCTGTAGGCTTTTGGGGCCATGTAGGCCCCGACAT
GCTTGAACGGGCTAAAGCCATTGAAGATGCGCTCCAATCCTACAGAACCC
TATCAATCCACCAGATAGAAGACACAGCTGATTCCCGGACGCCTGTCGAC
CACCTCCAGCGAATTGCAAGCATCTACCGGCTTGTAGGATTACTTCAGCT
CTACATGACCTTCCCTGAACTGCATGGAGCCCACTCTGTGGATTTTAGCC
TAACCCACAGCATCTTGGGCCTGGCCACCAATGTGCTAACCACCATTGGC
GTGCTTCCCCACACGTCTGGGGTTTACTGTTTGCTCACGATTCCATTGAT
TATCGCGGGTAGCGCTTTGCAACTTCCTTGTTTCTCGTCGGACGTCCCCA
CTTCCATGTTGCAGCAAGATACCTATCTCTTCTGGAGGAACTTCGTGCGG
GAGAGGGTAAAGACCGTTCAGGAGATTGTAGGACTCGTTACCATTGGCCG
CGCGCAGAAGATCCTCGATAAGGTGTGGTTTCTAGCCGACATGCGGAGGG
CCGCTGAGGATCCTGACCAGGAATGGGAGTACATCCAGTGGACCGAGGTC
ATGAGCTCCGAGAATTTGGAGTCAATCTTTGGTTAGCGAATCAAATGCGA
CGAGACGCTTCCTGTGTGTAATCAATGTACCCGCAAACGCTTCGAATGCC
CGGGATACAAACGCCCATTGAAGTGGTCGTCCAAGTATGAGGTGGGGAGA
AGTGGGAATAATAGCGCAGTCCTGAGCTCCTCCGAGCAGGTGCTCCAAAG
AATAGAGCCCGTCCAGCCATTACGACCCATCTTGTTCCAGTCCACAGTGC
CGGACGACGCCACACGCTCCCTGCCTGTGCAGACAGATGTCCAGCCCGCG
CAGAATGAGACTGCTGTTGGATCAGACCAGGCCTCAATCTCTGCGGCAAA
CAGTTCGCCACCGAAAGATATCTGGATCCCTTCGACTATGGTAGGTAATG
ATTGTGGTGAATTATGGACAGGAACCATATTAGCGGAACCGACTTTGTCT
ACCCAAAAAGACGATGACGCAGCTCTTCTCAGGCATTACTTTTCCAATGT
TTGCCGAGTCAATTCGTGCTTTGACTCCCACAAGAACTTCTTCCGTGCCG
AAGTGGGATCCCTGATAAGCTCCCGTCCTCTGATTCACTACTGCGTACTG
TCCATGTCCGCCGCCCATCTGACGGCAAGACAAAGAGATATGTTGACGAT
CACGCTGCGGCACCGGACAGAAGCACTATCCTGCTTGAAAGCTAGAATCA
CACAGGGGGTTTTGACACAAGAAATAAACAATGGATCACCACTCGATAAC
GTTGCCGAGATCTTAATTGGTAGCATACTCTTGGGCATGACAGAGATGGC
TGTCTAAGATGCAAACAAAGGATGTCAGATCCACAGCCAACCTCTCGCCG
CAGGTTCAAGACTCGCAGGGTGGCATGATCCCACTCAACTCGGGGTCACA
CATCTCCGTGGTGCACGCACGTTGTTCCGGAAATGGATTACTACCGTCCC
GGCATGCTGCCCTCGGACCAGAACTATGATTACGGGCATTATGTCCTACT
GGGAAGCAGTCGCCTCGTTTGTACACAACCAGTCCCTAGACTCGATATCC
TACCTCATGCCATTCTCCTTCGAGACATGCCATGTATACGTCAATCCATG
GACAGGGATCTGCACGCCACTTTTTATACATTTGGCCCAGATTGGTATAT
TGACAAGGCAGCGATCGCTAGCCAGACAATTGCCTGTAGGCTTTTGGGGC
CATGTAGGCCCCGACATGCTTGAACGGGCTAAAGCCATTGAAGATGCGCT
CCAATCCTACAGAACCCTATCAATCCACCAGATAGAAGACACAGCTGATT
CCCGGACGCCTGTCGACCACCTCCAGCGAATTGCAAGCATCTACCGGCTT
GTAGGATTACTTCAGCTCTACATGACCTTCCCTGAACTGCATGGAGCCCA
CTCTGTGGATTTTAGCCTAACCCACAGCATCTTGGGCCTGGCCACCAATG
TGCTAACCACCATTGGCGTGCTTCCCCACACGTCTGGGGTTTACTGTTTG
CTCACGATTCCATTGATTATCGCGGGTAGCGCTTTGCAACTTCCTTGTTT
CTCGTCGGACGTCCCCACTTCCATGTTGCAGCAAGATACCTATCTCTTCT
GGAGGAACTTCGTGCGGGAGAGGGTAAAGACCGTTCAGGAGATTGTAGGA
CTCGTTACCATTGGCCGCGCGCAGAAGATCCTCGATAAGGTGTGGTTTCT
AGCCGACATGCGGAGGGCCGCTGAGGATCCTGACCAGGAATGGGAGTACA
TCCAGTGGACCGAGGTCATGAGCTCCGAGAATTTGGAGTCAATCTTTGGT
TAGCGAATCAAATGCGACGAGACGCTTCCTGTGTGTAATCAATGTACCCG
CAAACGCTTCGAATGCCCGGGATACAAACGCCCATTGAAGTGGTCGTCCA
AGTATGAGGTGGGGAGAAGTGGGAATAATAGCGCAGTCCTGAGCTCCTCC
GAGCAGGTGCTCCAAAGAATAGAGCCCGTCCAGCCATTACGACCCATCTT
GTTCCAGTCCACAGTGCCGGACGACGCCACACGCTCCCTGCCTGTGCAGA
CAGATGTCCAGCCCGCGCAGAATGAGACTGCTGTTGGATCAGACCAGGCC
TCAATCTCTGCGGCAAACAGTTCGCCACCGAAAGATATCTGGATCCCTTC
GACTATGGTAGGTAATGATTGTGGTGAATTATGGACAGGAACCATATTAG
CGGAACCGACTTTGTCTACCCAAAAAGACGATGACGCAGCTCTTCTCAGG
CATTACTTTTCCAATGTTTGCCGAGTCAATTCGTGCTTTGACTCCCACAA
GAACTTCTTCCGTGCCGAAGTGGGATCCCTGATAAGCTCCCGTCCTCTGA
TTCACTACTGCGTACTGTCCATGTCCGCCGCCCATCTGACGGCAAGACAA
AGAGATATGTTGACGATCACGCTGCGGCACCGGACAGAAGCACTATCCTG
CTTGAAAGCTAGAATCACACAGGGGGTTTTGACACAAGAAATAAACAATG
GATCACCACTCGATAACGTTGCCGAGATCTTAATTGGTAGCATACTCTTG
GGCATGACAGAGATGGCTGTCTAAGATGCAAACAAAGGATGTCAGATCCA
CAGCCAACCTCTCGCCGCAGGTTCAAGACTCGCAGGGTGGCATGATCCCA
CTCAACTCGGGGTCACACATCTCCGTGGTGCACGCACGTTGTTCCGGAAA
TGGATTACTACCGTCCCGGCATGCTGCCCTCGGACCAGAACTATGATTAC
GGGCATTATGTCCTACTGGGAAGCAGTCGCCTCGTTTGTACACAACCAGT
CCCTAGACTCGATATCCTACCTCATGCCATTCTCCTTCGAGACATGCCAT
GTATACGTCAATCCATGGACAGGGATCTGCACGCCACTTTTTATACATTT
GGCCCAGATTGGTATATTGACAAGGCAGCGATCGCTAGCCAGACAATTGC
CTGTAGGCTTTTGGGGCCATGTAGGCCCCGACATGCTTGAACGGGCTAAA
GCCATTGAAGATGCGCTCCAATCCTACAGAACCCTATCAATCCACCAGAT
AGAAGACACAGCTGATTCCCGGACGCCTGTCGACCACCTCCAGCGAATTG
CAAGCATCTACCGGCTTGTAGGATTACTTCAGCTCTACATGACCTTCCCT
GAACTGCATGGAGCCCACTCTGTGGATTTTAGCCTAACCCACAGCATCTT
GGGCCTGGCCACCAATGTGCTAACCACCATTGGCGTGCTTCCCCACACGT
CTGGGGTTTACTGTTTGCTCACGATTCCATTGATTATCGCGGGTAGCGCT
TTGCAACTTCCTTGTTTCTCGTCGGACGTCCCCACTTCCATGTTGCAGCA
AGATACCTATCTCTTCTGGAGGAACTTCGTGCGGGAGAGGGTAAAGACCG
TTCAGGAGATTGTAGGACTCGTTACCATTGGCCGCGCGCAGAAGATCCTC
GATAAGGTGTGGTTTCTAGCCGACATGCGGAGGGCCGCTGAGGATCCTGA
CCAGGAATGGGAGTACATCCAGTGGACCGAGGTCATGAGCTCCGAGAATT
TGGAGTCAATCTTTGGTTAGCGAATCAAATGCGACGAGACGCTTCCTGTG
TGTAATCAATGTACCCGCAAACGCTTCGAATGCCCGGGATACAAACGCCC
ATTGAAGTGGTCGTCCAAGTATGAGGTGGGGAGAAGTGGGAATAATAGCG
CAGTCCTGAGCTCCTCCGAGCAGGTGCTCCAAAGAATAGAGCCCGTCCAG
CCATTACGACCCATCTTGTTCCAGTCCACAGTGCCGGACGACGCCACACG
CTCCCTGCCTGTGCAGACAGATGTCCAGCCCGCGCAGAATGAGACTGCTG
TTGGATCAGACCAGGCCTCAATCTCTGCGGCAAACAGTTCGCCACCGAAA
GATATCTGGATCCCTTCGACTATGGTAGGTAATGATTGTGGTGAATTATG
GACAGGAACCATATTAGCGGAACCGACTTTGTCTACCCAAAAAGACGATG
ACGCAGCTCTTCTCAGGCATTACTTTTCCAATGTTTGCCGAGTCAATTCG
TGCTTTGACTCCCACAAGAACTTCTTCCGTGCCGAAGTGGGATCCCTGAT
AAGCTCCCGTCCTCTGATTCACTACTGCGTACTGTCCATGTCCGCCGCCC
ATCTGACGGCAAGACAAAGAGATATGTTGACGATCACGCTGCGGCACCGG
ACAGAAGCACTATCCTGCTTGAAAGCTAGAATCACACAGGGGGTTTTGAC
ACAAGAAATAAACAATGGATCACCACTCGATAACGTTGCCGAGATCTTAA
TTGGTAGCATACTCTTGGGCATGACAGAGATGGCTGTCTAAGATGCAAAC
AAAGGATGTCAGATCCACAGCCAACCTCTCGCCGCAGGTTCAAGACTCGC
AGGGTGGCATGATCCCACTCAACTCGGGGTCACACATCTCCGTGGTGCAC
GCACGTTGTTCCGGAAATGGATTACTACCGTCCCGGCATGCTGCCCTCGG
ACCAGAACTATGATTACGGGCATTATGTCCTACTGGGAAGCAGTCGCCTC
GTTTGTACACAACCAGTCCCTAGACTCGATATCCTACCTCATGCCATTCT
CCTTCGAGACATGCCATGTATACGTCAATCCATGGACAGGGATCTGCACG
CCACTTTTTATACATTTGGCCCAGATTGGTATATTGACAAGGCAGCGATC
GCTAGCCAGACAATTGCCTGTAGGCTTTTGGGGCCATGTAGGCCCCGACA
TGCTTGAACGGGCTAAAGCCATTGAAGATGCGCTCCAATCCTACAGAACC
CTATCAATCCACCAGATAGAAGACACAGCTGATTCCCGGACGCCTGTCGA
CCACCTCCAGCGAATTGCAAGCATCTACCGGCTTGTAGGATTACTTCAGC
TCTACATGACCTTCCCTGAACTGCATGGAGCCCACTCTGTGGATTTTAGC
CTAACCCACAGCATCTTGGGCCTGGCCACCAATGTGCTAACCACCATTGG
CGTGCTTCCCCACACGTCTGGGGTTTACTGTTTGCTCACGATTCCATTGA
TTATCGCGGGTAGCGCTTTGCAACTTCCTTGTTTCTCGTCGGACGTCCCC
ACTTCCATGTTGCAGCAAGATACCTATCTCTTCTGGAGGAACTTCGTGCG
GGAGAGGGTAAAGACCGTTCAGGAGATTGTAGGACTCGTTACCATTGGCC
GCGCGCAGAAGATCCTCGATAAGGTGTGGTTTCTAGCCGACATGCGGAGG
GCCGCTGAGGATCCTGACCAGGAATGGGAGTACATCCAGTGGACCGAGGT
CATGAGCTCCGAGAATTTGGAGTCAATCTTTGGTTAGCGAATCAAATGCG
ACGAGACGCTTCCTGTGTGTAATCAATGTACCCGCAAACGCTTCGAATGC
CCGGGATACAAACGCCCATTGAAGTGGTCGTCCAAGTATGAGGTGGGGAG
AAGTGGGAATAATAGCGCAGTCCTGAGCTCCTCCGAGCAGGTGCTCCAAA
GAATAGAGCCCGTCCAGCCATTACGACCCATCTTGTTCCAGTCCACAGTG
CCGGACGACGCCACACGCTCCCTGCCTGTGCAGACAGATGTCCAGCCCGC
GCAGAATGAGACTGCTGTTGGATCAGACCAGGCCTCAATCTCTGCGGCAA
ACAGTTCGCCACCGAAAGATATCTGGATCCCTTCGACTATGGTAGGTAAT
GATTGTGGTGAATTATGGACAGGAACCATATTAGCGGAACCGACTTTGTC
TACCCAAAAAGACGATGACGCAGCTCTTCTCAGGCATTACTTTTCCAATG
TTTGCCGAGTCAATTCGTGCTTTGACTCCCACAAGAACTTCTTCCGTGCC
GAAGTGGGATCCCTGATAAGCTCCCGTCCTCTGATTCACTACTGCGTACT
GTCCATGTCCGCCGCCCATCTGACGGCAAGACAAAGAGATATGTTGACGA
TCACGCTGCGGCACCGGACAGAAGCACTATCCTGCTTGAAAGCTAGAATC
ACACAGGGGGTTTTGACACAAGAAATAAACAATGGATCACCACTCGATAA
CGTTGCCGAGATCTTAATTGGTAGCATACTCTTGGGCATGACAGAGATGG
CTGTCTAAGATGCAAACAAAGGATGTCAGATCCACAGCCAACCTCTCGCC
GCAGGTTCAAGACTCGCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005921-T1.utr3p1 | KJC3_005921-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005921-T1.utr5p1 | KJC3_005921-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_4.10 |
| Note | antiSMASH:Cluster_4.9 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4152215..4154396 - |
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