|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4161291..4162368+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005925-T1 ID=KJC3_005925-T1|Name=KJC3_005925-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1078bp|location=Sequence derived from alignment at ch4:4161291..4162368+ (Aspergillus niger KJC3)
TTGGTTCATCTTCCCCAATGATTCTTCCGGATTCGCAGTATGCGTTGGTC
GTGCAGGGGCCCGGTTCATTGCAATTGCTCAGCCACGCCCCTGTTCCCTC
GCTTGGAGCAGATCAGGTCCTGATCGAGGTGAAGGGGGTGGCACTAAACC
CCTCAGACTGGAAGATGCTTGATACTGCAGCAGCAAACCCGGGCACCATC
AGTGGAGGGGACTTTGCTGGGGTTGTCGTTGCGTGTGGGAGGGAGGTGAC
CGAGGCGGCGATTGGGGATCGTCTGTGTGGATTCGTTTTTGGAGCAGCTT
CATCCGGCGCATTTGCCCAGTTCGTCATGGTCCATCCCAGTCTCTGTTTT
CGAATCCCACCCTCCATGTCGTTTGAGGCCGCCGCCTCCCTTGGACTAGG
GCTAATGACGGGGGGATTGATGCTGCAGTCTCTCCACCTCAATCCGCTAC
GAGCTGCAGAGTCCACGCCTGATCATTGGGTGTTGGTCTATGGCGGCTCA
ACGGCAACAGGAACCCTCGCCATCCAGCTCCTACGCTATCATGGCTATCG
CGTCATCACCACTTGTTCTCCTCGGAATTTTGAACTAGTGCGACGGGTGG
GGGCAGTAGCTACGTTTGACTATACCTCCCCCACCTGCAAGGAGGACATT
CGGGCTTACACCGGTGGCACTCTCATGCATGTGATGGATTGTATTGCGGA
TTCACGCGCTACTACAATTTGTTACGGGGCCATCGGCGAAGCAGGCGGGC
GGTACTGTGCCTTGAATCAATTTCCCGCGCAATTGCACCGCCGTCGTGCC
TCTGTCTCTCCGGAGTGGATCCATAGTGCGACCATCTTCGGAGGCGATGT
TCAGCTGGCAGGCTCCTACTACCGGACAGCACGACCGGAGGATCGTGAAT
TTGCCATAGAATGGGCGCGATATTGTACCGAGCTTCTAGCCCAGGGAAAA
CTACAACCGCATCCACTTCAGGTGCAGCAGGGAGGTCTTGCGCGTGTGGT
CGAGGACTTGGTCCTTCTACGCAATCAGCAAATCACGGGCAAGAAGCTGG
TATATCCACTGTACTAATTGGGATTTGT back to topCoding sequence (CDS) from alignment at ch4:4161291..4162368+ >KJC3_005925-T1 ID=KJC3_005925-T1|Name=KJC3_005925-T1|organism=Aspergillus niger KJC3|type=CDS|length=1050bp|location=Sequence derived from alignment at ch4:4161291..4162368+ (Aspergillus niger KJC3)
ATGATTCTTCCGGATTCGCAGTATGCGTTGGTCGTGCAGGGGCCCGGTTC
ATTGCAATTGCTCAGCCACGCCCCTGTTCCCTCGCTTGGAGCAGATCAGG
TCCTGATCGAGGTGAAGGGGGTGGCACTAAACCCCTCAGACTGGAAGATG
CTTGATACTGCAGCAGCAAACCCGGGCACCATCAGTGGAGGGGACTTTGC
TGGGGTTGTCGTTGCGTGTGGGAGGGAGGTGACCGAGGCGGCGATTGGGG
ATCGTCTGTGTGGATTCGTTTTTGGAGCAGCTTCATCCGGCGCATTTGCC
CAGTTCGTCATGGTCCATCCCAGTCTCTGTTTTCGAATCCCACCCTCCAT
GTCGTTTGAGGCCGCCGCCTCCCTTGGACTAGGGCTAATGACGGGGGGAT
TGATGCTGCAGTCTCTCCACCTCAATCCGCTACGAGCTGCAGAGTCCACG
CCTGATCATTGGGTGTTGGTCTATGGCGGCTCAACGGCAACAGGAACCCT
CGCCATCCAGCTCCTACGCTATCATGGCTATCGCGTCATCACCACTTGTT
CTCCTCGGAATTTTGAACTAGTGCGACGGGTGGGGGCAGTAGCTACGTTT
GACTATACCTCCCCCACCTGCAAGGAGGACATTCGGGCTTACACCGGTGG
CACTCTCATGCATGTGATGGATTGTATTGCGGATTCACGCGCTACTACAA
TTTGTTACGGGGCCATCGGCGAAGCAGGCGGGCGGTACTGTGCCTTGAAT
CAATTTCCCGCGCAATTGCACCGCCGTCGTGCCTCTGTCTCTCCGGAGTG
GATCCATAGTGCGACCATCTTCGGAGGCGATGTTCAGCTGGCAGGCTCCT
ACTACCGGACAGCACGACCGGAGGATCGTGAATTTGCCATAGAATGGGCG
CGATATTGTACCGAGCTTCTAGCCCAGGGAAAACTACAACCGCATCCACT
TCAGGTGCAGCAGGGAGGTCTTGCGCGTGTGGTCGAGGACTTGGTCCTTC
TACGCAATCAGCAAATCACGGGCAAGAAGCTGGTATATCCACTGTACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005925-T1.utr5p1 | KJC3_005925-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005925-T1.utr3p1 | KJC3_005925-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_4.10 |
| Note | antiSMASH:Cluster_4.9 |
| Note | SMCOG1028:crotonyl-CoA reductase / alcohol dehydrogenase |
| DBxref | InterPro:IPR011032 |
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR013154 |
| DBxref | InterPro:IPR020843 |
| DBxref | PFAM:PF08240 |
| Product | putative secondary metabolism biosynthetic enzyme |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4161291..4162368 + |
|
