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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4212683..4213692- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005942-T1 ID=KJC3_005942-T1|Name=KJC3_005942-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1010bp|location=Sequence derived from alignment at ch4:4212683..4213692- (Aspergillus niger KJC3)
GCTCTTTATACGAGTAATTCGACTTGCTGCTTGCATTGCACTCCCCTTGA
AATACTTCACTATCAGGAACTACATACACATACCATAATGGCATCCAACG
GAACCCCCACCGAGTTCCCTTACACCCTGTAAGAAGAGTCAAACTCCCCT
TGTCCATAGCACATCAACACCACTAACCAACGATAAATCTCGACAGCACA
ATCTCCCTCCCTCTCCCCACCAATCGCCTTGCATCCGCTGCCCTCCGCAC
CCTTGAAGTCGACACCGAGCTCTCCCCCTTCGTCAAGCGCAGTTTCGCCC
TGACAACGCCAACCAAAGAGCAAACCGCCGAGGAAGAAGCCAAAACCGTG
CTGGAGACGACCTACTGCGCGACTACGAATCGCATGCTGCGTGTCTCTGT
AAATGGCTTCATGGAAAATCTGGCAGTTGTGCTTGGGGTGATGGAAGAAT
TGGATGTGGATGTTCTAGATGCGGATGATGATAAATGAATGATGGGTCTG
TTTTAGTGCAGACAGAAAACTGGAAAAGCAAATGCGAGGTTTACTGTGCT
ATGCTATGCTACACGCTACAAGCGGCATTGCTTGAGGGATAGATGTGCCC
GATAATTGGGTCGATCGAGACCATATCGGTATTTTGCCGCTGGTCATGAT
CGTTCGGACGGAATACACGGATACCGGGTGTTCCTCGCGGTGAAGACGAG
CCGCGTCCGGGGGGTTGTGGATGGGAGATGTGCGTACCGTGGATGGGGCA
TACCACCAACGTACATGTGTGCGTGGGCTTGTTATGCGATGAAGCTTGAA
TTGTGAATTGAGTCAGGAGTGTGTATAGCGGGTTGGGTCATATGTGGATG
GCGTGGAGAGTGGTCTGTCAGATTGTATAATGCGAGGGTCTAGAATGAAA
GATCACTAATGTCTACCTGTTTTCCCATAATGAAGTCTGGCAAGGTGCGG
ATAGATACGAAGAATATACGGAGCCCCAGTTCCAAATAGAAAGAAGCAAT
GCCACTAAGC back to topCoding sequence (CDS) from alignment at ch4:4212683..4213692- >KJC3_005942-T1 ID=KJC3_005942-T1|Name=KJC3_005942-T1|organism=Aspergillus niger KJC3|type=CDS|length=666bp|location=Sequence derived from alignment at ch4:4212683..4213692- (Aspergillus niger KJC3)
CACAATCTCCCTCCCTCTCCCCACCAATCGCCTTGCATCCGCTGCCCTCC
GCACCCTTGAAGTCGACACCGAGCTCTCCCCCTTCGTCAAGCGCAGTTTC
GCCCTGACAACGCCAACCAAAGAGCAAACCGCCGAGGAAGAAGCCAAAAC
CGTGCTGGAGACGACCTACTGCGCGACTACGAATCGCATGCTGCGTGTCT
CTGTAAATGGCTTCATGGAAAATCTGGCAGTTGTGCTTGGGGTGATGGAA
GAATTGGATGTGGATGTTCTAGATGCGGATGATGATAAATGAATGGCATC
CAACGGAACCCCCACCGAGTTCCCTTACACCCTCACAATCTCCCTCCCTC
TCCCCACCAATCGCCTTGCATCCGCTGCCCTCCGCACCCTTGAAGTCGAC
ACCGAGCTCTCCCCCTTCGTCAAGCGCAGTTTCGCCCTGACAACGCCAAC
CAAAGAGCAAACCGCCGAGGAAGAAGCCAAAACCGTGCTGGAGACGACCT
ACTGCGCGACTACGAATCGCATGCTGCGTGTCTCTGTAAATGGCTTCATG
GAAAATCTGGCAGTTGTGCTTGGGGTGATGGAAGAATTGGATGTGGATGT
TCTAGATGCGGATGATGATAAATGAATGGCATCCAACGGAACCCCCACCG
AGTTCCCTTACACCCT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005942-T1.utr3p1 | KJC3_005942-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005942-T1.utr5p1 | KJC3_005942-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR015419 |
| DBxref | PFAM:PF09341 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4212683..4213692 - |
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