You are here

Home

KJC3_005946-T1, KJC3_005946-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005946-T1
Unique NameKJC3_005946-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4221307..4222213-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005946-T1 ID=KJC3_005946-T1|Name=KJC3_005946-T1|organism=Aspergillus niger KJC3|type=mRNA|length=907bp|location=Sequence derived from alignment at ch4:4221307..4222213- (Aspergillus niger KJC3)
CCCAAAGCAAACCACCTCCATACATCACCCTCCTCCCCTACTTCTCCGGA
ATGACTCCCGAAACTCCCCTCGATAAAGCCACCTACCTCGTAAACTCCCT
CGAGAAATACGGACAAGGCGACTACATCGGCGAATCCATCAGTCAGCTTG
AACACTGTCTACAAGCCGCGCACCAAGCCCAGAAATCAGGTACGATAAAC
ACTCCACTCCACTACAAGAGCACCAAATTATCACCATAAGATGAAGAACG
ATAGAAAATTACAGAGACTCAAAAACCAAACTATGTCAGGCGCATCCCCC
GAACTAATCCTCGCCGCCCTCCTCCACGACATCGGCCAAATCATCCCCCT
CTCATCCACAAAGGAAGTCCGAATGAACCTGAAATCCAATAACAGTAACA
GCACCGAGAACGTCGGTCGAATGGGCCACGAAACCATTGGAGCGGAATAT
CTTCGTTCACTGGGTTTCAGTGAAAGGGTTTGTCGGTTAGTGGAGAGTCA
TGTTCCTGCGAAGCGGTATTATTCTCTCCTAGCCTAACACCTACTACTAC
TGTCCTTAAACTTTCGAGCTGATAAGATAATGACCAACCGGAATAGGTAC
CTTACCGCCACAAATAAAGCATACTACGAGACATTGTCGTCCGCATCGAA
GAAATCACTAGAGTTCCAGGGCGGGCCGTTTAAGGGCGCTGAGTTAGAGG
CCTTCGAGACGGATCCGTTACGTGATGAGATGGTCAAGTTGAGACTTTGG
GATGATGCGGCGAAGGTGCAGGGGATTGAGGAGAGTACGCCGAGGGCGGG
GGAGTATCGGGATATGATTCGGGTGCATTTGGAAGGGAGGTGTTAGGGTG
GGTAGATGTTCTTGGTCGTTTGGGTATGAAAGGGGCTGTGTATGGTCTGG
ATAGAAG
back to top

Coding sequence (CDS) from alignment at ch4:4221307..4222213-

>KJC3_005946-T1 ID=KJC3_005946-T1|Name=KJC3_005946-T1|organism=Aspergillus niger KJC3|type=CDS|length=1845bp|location=Sequence derived from alignment at ch4:4221307..4222213- (Aspergillus niger KJC3)
GTACCTTACCGCCACAAATAAAGCATACTACGAGACATTGTCGTCCGCAT
CGAAGAAATCACTAGAGTTCCAGGGCGGGCCGTTTAAGGGCGCTGAGTTA
GAGGCCTTCGAGACGGATCCGTTACGTGATGAGATGGTCAAGTTGAGACT
TTGGGATGATGCGGCGAAGGTGCAGGGGATTGAGGAGAGTACGCCGAGGG
CGGGGGAGTATCGGGATATGATTCGGGTGCATTTGGAAGGGAGGTGTTAG
GCGCATCCCCCGAACTAATCCTCGCCGCCCTCCTCCACGACATCGGCCAA
ATCATCCCCCTCTCATCCACAAAGGAAGTCCGAATGAACCTGAAATCCAA
TAACAGTAACAGCACCGAGAACGTCGGTCGAATGGGCCACGAAACCATTG
GAGCGGAATATCTTCGTTCACTGGGTTTCAGTGAAAGGGTTTGTCGGTTA
GTGGAGAGTCATGTTCCTGCGAAGCGATGACTCCCGAAACTCCCCTCGAT
AAAGCCACCTACCTCGTAAACTCCCTCGAGAAATACGGACAAGGCGACTA
CATCGGCGAATCCATCAGTCAGCTTGAACACTGTCTACAAGCCGCGCACC
AAGCCCAGAAATCAGGTACCTTACCGCCACAAATAAAGCATACTACGAGA
CATTGTCGTCCGCATCGAAGAAATCACTAGAGTTCCAGGGCGGGCCGTTT
AAGGGCGCTGAGTTAGAGGCCTTCGAGACGGATCCGTTACGTGATGAGAT
GGTCAAGTTGAGACTTTGGGATGATGCGGCGAAGGTGCAGGGGATTGAGG
AGAGTACGCCGAGGGCGGGGGAGTATCGGGATATGATTCGGGTGCATTTG
GAAGGGAGGTGTTAGGCGCATCCCCCGAACTAATCCTCGCCGCCCTCCTC
CACGACATCGGCCAAATCATCCCCCTCTCATCCACAAAGGAAGTCCGAAT
GAACCTGAAATCCAATAACAGTAACAGCACCGAGAACGTCGGTCGAATGG
GCCACGAAACCATTGGAGCGGAATATCTTCGTTCACTGGGTTTCAGTGAA
AGGGTTTGTCGGTTAGTGGAGAGTCATGTTCCTGCGAAGCGATGACTCCC
GAAACTCCCCTCGATAAAGCCACCTACCTCGTAAACTCCCTCGAGAAATA
CGGACAAGGCGACTACATCGGCGAATCCATCAGTCAGCTTGAACACTGTC
TACAAGCCGCGCACCAAGCCCAGAAATCAGGTACCTTACCGCCACAAATA
AAGCATACTACGAGACATTGTCGTCCGCATCGAAGAAATCACTAGAGTTC
CAGGGCGGGCCGTTTAAGGGCGCTGAGTTAGAGGCCTTCGAGACGGATCC
GTTACGTGATGAGATGGTCAAGTTGAGACTTTGGGATGATGCGGCGAAGG
TGCAGGGGATTGAGGAGAGTACGCCGAGGGCGGGGGAGTATCGGGATATG
ATTCGGGTGCATTTGGAAGGGAGGTGTTAGGCGCATCCCCCGAACTAATC
CTCGCCGCCCTCCTCCACGACATCGGCCAAATCATCCCCCTCTCATCCAC
AAAGGAAGTCCGAATGAACCTGAAATCCAATAACAGTAACAGCACCGAGA
ACGTCGGTCGAATGGGCCACGAAACCATTGGAGCGGAATATCTTCGTTCA
CTGGGTTTCAGTGAAAGGGTTTGTCGGTTAGTGGAGAGTCATGTTCCTGC
GAAGCGATGACTCCCGAAACTCCCCTCGATAAAGCCACCTACCTCGTAAA
CTCCCTCGAGAAATACGGACAAGGCGACTACATCGGCGAATCCATCAGTC
AGCTTGAACACTGTCTACAAGCCGCGCACCAAGCCCAGAAATCAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005946KJC3_005946Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005946-T1KJC3_005946-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005946-T1.cdsKJC3_005946-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005946-T1.utr3p1KJC3_005946-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005946-T1.exon3KJC3_005946-T1.exon3Aspergillus niger KJC3exon
KJC3_005946-T1.exon2KJC3_005946-T1.exon2Aspergillus niger KJC3exon
KJC3_005946-T1.exon1KJC3_005946-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005946-T1.utr5p1KJC3_005946-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR003607
DBxrefInterPro:IPR006674
DBxrefInterPro:IPR006675
DBxrefPFAM:PF01966
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4221307..4222213 -
Powered by Drupal