You are here

Home

KJC3_005996-T1, KJC3_005996-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005996-T1
Unique NameKJC3_005996-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4351742..4352875-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005996-T1 ID=KJC3_005996-T1|Name=KJC3_005996-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1134bp|location=Sequence derived from alignment at ch4:4351742..4352875- (Aspergillus niger KJC3)
CCCGTACCTGTAAAGCAAATGGAAATAGTCGTAGGCTGTAGTCAGCTTCG
ATGGCTGCCATAGCCGTTGATTACGCTGCTGCGGTGGCTCCCTACCGTGG
TCCGTTTCGAGTGGAGAGCCGCTCCCCGCCGACCAAAAATCTCTCTCTCG
CTCATGTTTGAGTCCCACCTCATGCCAACACCTGCATTCAATTCTTGCTA
ATCACTTGAAGGAGTCGAAAGGGATAATTACTCACTGATCCCAAGAGCCA
TGCCATTGACACGTTCCTCCGATCCCCTAGTGTGGATCGACTGCGAGGTG
CGGCATTCCTCTGCTTTTACCCCTCTACCAGCCGCGACTGACGAACCCCT
CCAACATTTCGATCGGCGTGTAGATGACCGGCCTTGACGCGGACACCGAC
CAAATCCTCCAAATCTGTTGCTTCATCACCGACGCCAATCTCAACCTCCT
CGAGCCCCAGGGCTTCGAAACCGTCATCCACCATCCGACCTCAGTCCTAG
ACAACATGAACGCATGGTGCATCGAGACCCACGGTCGCACAGGGCTAACG
GCGGCCGTGCAGGCCTCGACCACCACCGCGGAGGAGGCTGCGACGGCTCT
TTTGGCCTATATCCAGAAATACGTGCCACAACCCCGGCGAGGGTTGCTGG
CGGGGAACAGTGTACACGCCGACAAGGCGTTTCTGGCTAAGGGACCATAC
CAAGCGGTGCTAGACTGGCTACACTATCGGATCGTGGACGTGAGCGCACT
CAAGGAGATGGTACGACGGTGGGGCTCAGAAGAGCTACTAGAATCCGTGC
CAGGGAAGAAGGAGGTTCATCTTGCGCGGGACGATATTCTGGAAAGCATC
GAAGAGATGCGATTCTACCGGGGGCGATTGTTCGGATTCTAGCCGAATGT
CTGAGCGAGGGAACGGACCGGGAAGCTCTTCCCAGAATCCCAACGTACAC
GAAGCATAGAGAGGGGTAGACCCCAATTACAATGTAGACAGCTGGATGGA
TGCCCAATGGATCCGGGATTGCAGCAAGAATGGCCGGTTTTTCCCAGGTA
TCTGCAGCTCGAGTGCCGTAGTGTATCGCGATGGAATCGAATGAAGCTCT
GGCCTGAAGTCATGCTGACATGGGCCCCTCCTGG
back to top

Coding sequence (CDS) from alignment at ch4:4351742..4352875-

>KJC3_005996-T1 ID=KJC3_005996-T1|Name=KJC3_005996-T1|organism=Aspergillus niger KJC3|type=CDS|length=1134bp|location=Sequence derived from alignment at ch4:4351742..4352875- (Aspergillus niger KJC3)
ATGACCGGCCTTGACGCGGACACCGACCAAATCCTCCAAATCTGTTGCTT
CATCACCGACGCCAATCTCAACCTCCTCGAGCCCCAGGGCTTCGAAACCG
TCATCCACCATCCGACCTCAGTCCTAGACAACATGAACGCATGGTGCATC
GAGACCCACGGTCGCACAGGGCTAACGGCGGCCGTGCAGGCCTCGACCAC
CACCGCGGAGGAGGCTGCGACGGCTCTTTTGGCCTATATCCAGAAATACG
TGCCACAACCCCGGCGAGGGTTGCTGGCGGGGAACAGTGTACACGCCGAC
AAGGCGTTTCTGGCTAAGGGACCATACCAAGCGGTGCTAGACTGGCTACA
CTATCGGATCGTGGACGTGAGCGCACTCAAGGAGATGGTACGACGGTGGG
GCTCAGAAGAGCTACTAGAATCCGTGCCAGGGAAGAAGGAGGTTCATCTT
GCGCGGGACGATATTCTGGAAAGCATCGAAGAGATGCGATTCTACCGGGG
GCGATTGTTCGGATTCTAGATGCCATTGACACGTTCCTCCGATCCCCTAG
TGTGGATCGACTGCGAGATGACCGGCCTTGACGCGGACACCGACCAAATC
CTCCAAATCTGTTGCTTCATCACCGACGCCAATCTCAACCTCCTCGAGCC
CCAGGGCTTCGAAACCGTCATCCACCATCCGACCTCAGTCCTAGACAACA
TGAACGCATGGTGCATCGAGACCCACGGTCGCACAGGGCTAACGGCGGCC
GTGCAGGCCTCGACCACCACCGCGGAGGAGGCTGCGACGGCTCTTTTGGC
CTATATCCAGAAATACGTGCCACAACCCCGGCGAGGGTTGCTGGCGGGGA
ACAGTGTACACGCCGACAAGGCGTTTCTGGCTAAGGGACCATACCAAGCG
GTGCTAGACTGGCTACACTATCGGATCGTGGACGTGAGCGCACTCAAGGA
GATGGTACGACGGTGGGGCTCAGAAGAGCTACTAGAATCCGTGCCAGGGA
AGAAGGAGGTTCATCTTGCGCGGGACGATATTCTGGAAAGCATCGAAGAG
ATGCGATTCTACCGGGGGCGATTGTTCGGATTCTAGATGCCATTGACACG
TTCCTCCGATCCCCTAGTGTGGATCGACTGCGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:00001753'-5'-exoribonuclease activity
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005996KJC3_005996Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005996-T1KJC3_005996-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005996-T1.cdsKJC3_005996-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005996-T1.utr3p1KJC3_005996-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005996-T1.exon2KJC3_005996-T1.exon2Aspergillus niger KJC3exon
KJC3_005996-T1.exon1KJC3_005996-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005996-T1.utr5p1KJC3_005996-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264V2U
DBxrefInterPro:IPR012337
DBxrefInterPro:IPR022894
DBxrefInterPro:IPR036397
DBxrefInterPro:IPR013520
DBxrefPFAM:PF00929
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4351742..4352875 -
Powered by Drupal