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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4695349..4697151+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006104-T1 ID=KJC3_006104-T1|Name=KJC3_006104-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1803bp|location=Sequence derived from alignment at ch4:4695349..4697151+ (Aspergillus niger KJC3)
ACCACCAACCTCGACAACCAACCTCACGACAGAAGGCAGCATCCGCAGCA
CAGCCAGCTACCCGTCGCTCGTCTGCAATCATGGCTGCTATCAACAAGAT
CGCCATCAACTCGCCGTCGAGGCAGAACCCCTCCGAGCTGGAGACCGCGA
TCGCCGGTGCTCTCTTCGACCTCGAGAGCAACACACAGGACCTGAAGGCC
ACCCTCAGGCCCCTGCAGTTTGTCTCTGCCCGTGAGGTAAGGATGATTTG
GTTTTTTCATACATAGCCTCCGTCCGTGTACAGATCAGAGGCGTCGAGAG
TTTTTGAATCGCGGAAATTGCCAACATACGAGACGTTTTGGGGAAATATC
AAATATCCATGTGGATATTGTGCGTGTGTGCGGTCCGCACCTGGATGATG
TATACGTGTGCTTGGGGACTGAATACCACCAGCATCGAGGAAAAGAAGAA
AAAAAAAAAAAAAAGAAACGAATTGAATCGTCCCAACAACCGACCGACAC
TCTGATCTGCTGCGCGAACTGGGGATAAGAAAATTATTTGTTTTCTCGGA
TTGTGCGCAATTTGATATTGACTCTACTATCACAATAGGTCGAGGTCGGC
CACGGCAAGAAGGCAGTCATCATCTTCGTCCCTGTCCCTCTCCTCCAGGG
CTTCCACAAGATCCAGCAGCGGTACGATTTTCCACTCCACAATCATCACC
TCCACACCAAATAAAATCTACACCAACATCAACCCCGGAATGTGCCAGCC
ACATGATACCCACAACCCCCGGAGTGTTGGCAATTAAAAAAACGAAACAC
CAGAACCATAACTGACAATGATATCATAGCCTGACCCGTGAGCTCGAGAA
GAAGTTCTCCGACCGCCACGTTCTCTTCGTTGCTCAGCGCCGCATCCTGC
CCCGCCCCAAGCGCTCCGCCAGCTCTCGTTCCAACCAGAAGCAGAAGCGT
CCCCGTTCCCGCACTCTGACTGCTGTCCACGACGCCATCCTCACCGACCT
CGTCTACCCCGTCGAGATCGTCGGCAAGCGTACCCGCACCAAGGAGGACG
GCTCCAAGACCCTCAAGGTCATCCTGGACGAGAAGGAGCGTGGTGGTGTT
GACCACCGCCTTGATGCCTACGGCGAGGTCTACCGTCGGTTGACTGGCCG
TGCTGTTGTCTTTGAATTCCCCCAGGGTGGTGCCGACTACTAGAAAGGAT
CAAATTTTTTTTCCTCTTTTTTTTTCCTTTTTAATTTGACAAGTGACAAA
TGTGACAAGACAAGAGACTAAAATTTGATTTGACTACTTCTTCCTCAATT
TCTTCTTACTCGTCCTATTCTTCCTTTTTTCTCCTTTTTTATATCTTTCG
TCGGACTTCCTCAAATCACGTACCATATGCATGTGGCTCGGGGGCATGCA
GAACACACACAAAACATTTCAATCTACGATTTCCCCTCCCCATCTCCCTC
CCCCCTCTTGTTTTGTTTCCTGCATGTTCTCCCCCCACCACCACACCCGT
CAGTCACCTTCTTGCTTGCTTGCGGCTCTGTGGGTTGAGATTTTGAGACA
GTGAGGTTCTGGTCAGGTTTCTTTCGGTCGGTCGGTCGGTTCTGGTACAT
GGTTTGTTGGGGGTTTCGGGCAAACCGGGTATTGAGGATTGAGGGGGGTT
TGAAAGGAAGTCAAGTCAAGTGATTGTCGTCTTGGTTGCAGTTGTCATTG
TCATGTTAGCTACAAAAAAAAAGAAAGGGAGAAGGAAATGTGATTGGTAG
CTATAGGGCTAGGGGAACACCTTCAAAAGAAAATGCATTGTGATGTCGAG
TGT back to topCoding sequence (CDS) from alignment at ch4:4695349..4697151+ >KJC3_006104-T1 ID=KJC3_006104-T1|Name=KJC3_006104-T1|organism=Aspergillus niger KJC3|type=CDS|length=1809bp|location=Sequence derived from alignment at ch4:4695349..4697151+ (Aspergillus niger KJC3)
ATGGCTGCTATCAACAAGATCGCCATCAACTCGCCGTCGAGGCAGAACCC
CTCCGAGCTGGAGACCGCGATCGCCGGTGCTCTCTTCGACCTCGAGAGCA
ACACACAGGACCTGAAGGCCACCCTCAGGCCCCTGCAGTTTGTCTCTGCC
CGTGAGGTCGAGGTCGGCCACGGCAAGAAGGCAGTCATCATCTTCGTCCC
TGTCCCTCTCCTCCAGGGCTTCCACAAGATCCAGCAGCGCCTGACCCGTG
AGCTCGAGAAGAAGTTCTCCGACCGCCACGTTCTCTTCGTTGCTCAGCGC
CGCATCCTGCCCCGCCCCAAGCGCTCCGCCAGCTCTCGTTCCAACCAGAA
GCAGAAGCGTCCCCGTTCCCGCACTCTGACTGCTGTCCACGACGCCATCC
TCACCGACCTCGTCTACCCCGTCGAGATCGTCGGCAAGCGTACCCGCACC
AAGGAGGACGGCTCCAAGACCCTCAAGGTCATCCTGGACGAGAAGGAGCG
TGGTGGTGTTGACCACCGCCTTGATGCCTACGGCGAGGTCTACCGTCGGT
TGACTGGCCGTGCTGTTGTCTTTGAATTCCCCCAGGGTGGTGCCGACTAC
TAGATGGCTGCTATCAACAAGATCGCCATCAACTCGCCGTCGAGGCAGAA
CCCCTCCGAGCTGGAGACCGCGATCGCCGGTGCTCTCTTCGACCTCGAGA
GCAACACACAGGACCTGAAGGCCACCCTCAGGCCCCTGCAGTTTGTCTCT
GCCCGTGAGGTCGAGGTCGGCCACGGCAAGAAGGCAGTCATCATCTTCGT
CCCTGTCCCTCTCCTCCAGGGCTTCCACAAGATCCAGCAGCGCCTGACCC
GTGAGCTCGAGAAGAAGTTCTCCGACCGCCACGTTCTCTTCGTTGCTCAG
CGCCGCATCCTGCCCCGCCCCAAGCGCTCCGCCAGCTCTCGTTCCAACCA
GAAGCAGAAGCGTCCCCGTTCCCGCACTCTGACTGCTGTCCACGACGCCA
TCCTCACCGACCTCGTCTACCCCGTCGAGATCGTCGGCAAGCGTACCCGC
ACCAAGGAGGACGGCTCCAAGACCCTCAAGGTCATCCTGGACGAGAAGGA
GCGTGGTGGTGTTGACCACCGCCTTGATGCCTACGGCGAGGTCTACCGTC
GGTTGACTGGCCGTGCTGTTGTCTTTGAATTCCCCCAGGGTGGTGCCGAC
TACTAGATGGCTGCTATCAACAAGATCGCCATCAACTCGCCGTCGAGGCA
GAACCCCTCCGAGCTGGAGACCGCGATCGCCGGTGCTCTCTTCGACCTCG
AGAGCAACACACAGGACCTGAAGGCCACCCTCAGGCCCCTGCAGTTTGTC
TCTGCCCGTGAGGTCGAGGTCGGCCACGGCAAGAAGGCAGTCATCATCTT
CGTCCCTGTCCCTCTCCTCCAGGGCTTCCACAAGATCCAGCAGCGCCTGA
CCCGTGAGCTCGAGAAGAAGTTCTCCGACCGCCACGTTCTCTTCGTTGCT
CAGCGCCGCATCCTGCCCCGCCCCAAGCGCTCCGCCAGCTCTCGTTCCAA
CCAGAAGCAGAAGCGTCCCCGTTCCCGCACTCTGACTGCTGTCCACGACG
CCATCCTCACCGACCTCGTCTACCCCGTCGAGATCGTCGGCAAGCGTACC
CGCACCAAGGAGGACGGCTCCAAGACCCTCAAGGTCATCCTGGACGAGAA
GGAGCGTGGTGGTGTTGACCACCGCCTTGATGCCTACGGCGAGGTCTACC
GTCGGTTGACTGGCCGTGCTGTTGTCTTTGAATTCCCCCAGGGTGGTGCC
GACTACTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006104-T1.utr5p1 | KJC3_006104-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006104-T1.utr3p1 | KJC3_006104-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000554 |
| DBxref | PFAM:PF01251 |
| Product | 40S ribosomal protein S7 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4695349..4697151 + |
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