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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4697508..4699903- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006105-T2 ID=KJC3_006105-T2|Name=KJC3_006105-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2396bp|location=Sequence derived from alignment at ch4:4697508..4699903- (Aspergillus niger KJC3)
CCTCCTGTCGCGGGGTTGTTCTCTCTACGATTTTTTATGTGTGATGGGTC
TTATGGGTATGTTGGAAGCAGATTTCAGTGAGATATCAGCTTGAATTGTG
TCCTGTATGGTTATATTTACTGGTGTTCTAGGTATGGTGCTTCCTGCTTC
CCCCCTGATGTTGTTTTCGGGCTCCCATACTGATTTATTGATGATGCGCC
CAGAATGCAATAAGCAATATCTTGACTGAATTTTTCAACATGTCACGCCC
CTTCCCTTACACCTTCATATCTTGTCCTTGCGCCAATATCCCCGTTCCTG
ACCCGGCGAAGAAACGGAGGTCCAGGGAGTCGCCGCAGAAATCCAACAAC
CCCGATCAACCCAAACCTCTCCTGCGCCCGGATGACGACGAAGATGAACA
GGCTTTCGATCCTCGGTCTCCGCGCGCCAATTTCTCTCTGTATCCCCCGG
AGCAGCTGCTTTACTGCGAGGATTGCCATCAGATCAAGTGCCCGCGATGC
ATAACCGAGGAGATTGTGTGCTGGTACTGTCCGAACTGCCTGTTCGAGAC
GCCCAGCAGTATGGTCCGGAGTGAGGGAAATCGGTAGGTTGAGCAGGATA
TACACGTCCTCAAGCCTTTACAAGTGTGTTCTAATGCGGTAAATGCTAGA
TGTGCTCGCAATTGCTTCAATTGCCCGATATGCACCGCCCCTCTGGGCGT
CAACACCCTCGAAAACGTCGTGACAGGCGGCACCAGCCAACAAGGCCCCT
GGGTGTTGTCCTGCGGATACTGCATGTGGTCGACGCTGGATATTGGCATC
AAGTTCGATAAACCGACCAACATTCGGACTCAATTGTCCAAGATGACCGA
AATCACTCCTGCTCGCTCGAGACAAATGTCCCGGACGTTCGGGGATCTCA
AATCTCCCCTCTCCACATACTCTTCTATCGACGAGCACTTCCCACCGCCA
GGAGAGAATAAGCCCGAAGACTCTCCTCTAGACCAGCCCAGCGCTCCTCT
CACCCCAGATGCCCGATTCCACGCACTCAAGAACTTCTACAAGAACCAAA
TCTCTGCGACATCCTCCTCCCCAACCGACCCCCTAGGCATGGACTTCGGC
TCCGGCTTCTCCTCCCCCGGTGCCCTAAACCGCATCATGTCTCTCTACAC
CTCCTCATCCCGCCTCAGCAGCCTCTACGGCGGAGCCAACAAAAAGCCCA
AAACCAAACCACCCGTCATGCGAGAAGCCCTCACAGCCAGCGAGGGGCTC
AAGATCCCCTCCCCAGACGCCGAAGACACGCTGATCCAACGCATGTCCTC
CCCGGACTGCGGATGGGACGGCCTCGCCTCCATCGAACAACGCGGCTTCC
AATCTCCTGATGCCCGGTTCGTAGAGGACCTCCTCCCGCTGCCCGTGTTA
CTTCGCACGAAGCGGTCCAAACGATGCAAGTCGTGCAAGCACATCCTTGT
CAAACCCGAACTGAAACCACAGTCCACGCGGTTCCGCATCCGCCTGATTG
CCTTCAGCTACATTCCCTTACCGACGTTACGGCCGCTGAATCCCAGTCCC
TCCCCAGCCACCACCACCACCACTACCACCGTTCTCCCGACGCCCTCAAG
TTCCACGACGAACCCGAACCTGGACGCTCTCTCCCCGCTCCGACCCATCC
AACTCCTCCTCACGCTGAAGAATCACATGTTCGATCCCGTCCGCGTCACA
CTCGCCACGCCATCCGTCACCCCGGGCCGCGTGGCCTCCAAAGTAACTAT
CCTCTGTCCGCAATTCGACATTGGCGCCAACAGCGATGTGTGGGACGAAG
CCCTCCAGGGTACTTCGGCTACCACTACTACCACTGCTGCCGCGGGCACA
GGAACTGACCCCCGCGGATCCCGATCCGGAGGGCTAGGCGTGTATGAGAA
AGTCGCCGAGGCCGGGAAAGTCTGGGACAAGGGACGGAACTGGACCACCG
TGGTGTTGGAAGTCGTACCAGGGACATTACCTGGTGGTGCGAAAGAACCC
TCCTCCTCTACCAACAAGACCAAGAAAGACAAGACGAAGAAGAAGAGCCC
TACCGATGACTTAGACGACCAAGATGAGAACTCTGACGATGACGAGTCCG
ACTCTGACCCGGGTTTCGACTGGAGCGGACAGACATCTGATCCCAACCAG
CAGTTACAGCCGGATGAAGATGTGCTGGAGATTCCGGTGTTTGTGCATAT
GGAGTGGGATTCGGATAATCAGATTGATAGTGAACAGGCGGTCGGAAGGG
CCGGGACGGGTGGGAGTGATACGGTTAAGAGGGAGTTGGCGTATTGGATG
GTGTTGGGGGTGGGGAGAATTGTGAGGGAGATTGTGTAGATAGATAGATG
GTTGTTTGGTTCCATTGGGTTGTATAGATGGTGATGGATGTTGGTG back to topCoding sequence (CDS) from alignment at ch4:4697508..4699903- >KJC3_006105-T2 ID=KJC3_006105-T2|Name=KJC3_006105-T2|organism=Aspergillus niger KJC3|type=CDS|length=1566bp|location=Sequence derived from alignment at ch4:4697508..4699903- (Aspergillus niger KJC3)
ATGTGGTCGACGCTGGATATTGGCATCAAGTTCGATAAACCGACCAACAT
TCGGACTCAATTGTCCAAGATGACCGAAATCACTCCTGCTCGCTCGAGAC
AAATGTCCCGGACGTTCGGGGATCTCAAATCTCCCCTCTCCACATACTCT
TCTATCGACGAGCACTTCCCACCGCCAGGAGAGAATAAGCCCGAAGACTC
TCCTCTAGACCAGCCCAGCGCTCCTCTCACCCCAGATGCCCGATTCCACG
CACTCAAGAACTTCTACAAGAACCAAATCTCTGCGACATCCTCCTCCCCA
ACCGACCCCCTAGGCATGGACTTCGGCTCCGGCTTCTCCTCCCCCGGTGC
CCTAAACCGCATCATGTCTCTCTACACCTCCTCATCCCGCCTCAGCAGCC
TCTACGGCGGAGCCAACAAAAAGCCCAAAACCAAACCACCCGTCATGCGA
GAAGCCCTCACAGCCAGCGAGGGGCTCAAGATCCCCTCCCCAGACGCCGA
AGACACGCTGATCCAACGCATGTCCTCCCCGGACTGCGGATGGGACGGCC
TCGCCTCCATCGAACAACGCGGCTTCCAATCTCCTGATGCCCGGTTCGTA
GAGGACCTCCTCCCGCTGCCCGTGTTACTTCGCACGAAGCGGTCCAAACG
ATGCAAGTCGTGCAAGCACATCCTTGTCAAACCCGAACTGAAACCACAGT
CCACGCGGTTCCGCATCCGCCTGATTGCCTTCAGCTACATTCCCTTACCG
ACGTTACGGCCGCTGAATCCCAGTCCCTCCCCAGCCACCACCACCACCAC
TACCACCGTTCTCCCGACGCCCTCAAGTTCCACGACGAACCCGAACCTGG
ACGCTCTCTCCCCGCTCCGACCCATCCAACTCCTCCTCACGCTGAAGAAT
CACATGTTCGATCCCGTCCGCGTCACACTCGCCACGCCATCCGTCACCCC
GGGCCGCGTGGCCTCCAAAGTAACTATCCTCTGTCCGCAATTCGACATTG
GCGCCAACAGCGATGTGTGGGACGAAGCCCTCCAGGGTACTTCGGCTACC
ACTACTACCACTGCTGCCGCGGGCACAGGAACTGACCCCCGCGGATCCCG
ATCCGGAGGGCTAGGCGTGTATGAGAAAGTCGCCGAGGCCGGGAAAGTCT
GGGACAAGGGACGGAACTGGACCACCGTGGTGTTGGAAGTCGTACCAGGG
ACATTACCTGGTGGTGCGAAAGAACCCTCCTCCTCTACCAACAAGACCAA
GAAAGACAAGACGAAGAAGAAGAGCCCTACCGATGACTTAGACGACCAAG
ATGAGAACTCTGACGATGACGAGTCCGACTCTGACCCGGGTTTCGACTGG
AGCGGACAGACATCTGATCCCAACCAGCAGTTACAGCCGGATGAAGATGT
GCTGGAGATTCCGGTGTTTGTGCATATGGAGTGGGATTCGGATAATCAGA
TTGATAGTGAACAGGCGGTCGGAAGGGCCGGGACGGGTGGGAGTGATACG
GTTAAGAGGGAGTTGGCGTATTGGATGGTGTTGGGGGTGGGGAGAATTGT
GAGGGAGATTGTGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005869 | dynactin complex |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006105-T2.utr3p1 | KJC3_006105-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008603 |
| DBxref | PFAM:PF05502 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4697508..4699903 - |
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