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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4732381..4734778+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006115-T1 ID=KJC3_006115-T1|Name=KJC3_006115-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2398bp|location=Sequence derived from alignment at ch4:4732381..4734778+ (Aspergillus niger KJC3)
CTCAATTCTCTCGCTCTCTCTTCCTTCCCTCTCTTCTCTCTCATTGTTCT
TTGTTCCCCCTCCCTTCCTAATTTCCCAGCCGCCTCTTCCACAAGGCCTT
CCTTGTCTGCTCTGCGACACTTTTTCGTGATACAACCCTCACGGAGAGAC
CTTGACTGGTTCCATCGCGGTCGGGCAAGTTTGGCTTCGAGGTTTCGGGG
AATACGCTGGAGAAGGAGATCACCGAGTACTTCAGTGCTTTACTCTGGGA
ACTTTGGCAGGACCAAGAGTCCTTCACCTGCCCGGAAAGGTAAAGCGCTA
GCTTATAGAACCTGATCCCCTCCTTTGAGGACAAACTGCATGCCGGTGAC
TACCGGTTTACCTTCACCGTTGTCATTCATCATGTAGTTTTCACTCGGGA
ATCTCATGCTTCGTCTCCCATTGGAGTTGTTGTTCAGATATGCTTGGGGC
ATTCAGGCTAACATCAGTACAAAGGCAGTGACGTGGAGACGTAATTGCAA
ACCAGTTTGAGCGATTCGCGCCGCTGCTGTCCCATCTTTTCTCGCCGCTA
CACTGTGAGCACGCCGAATCACAGTCTTTTCAACAGACTTTGGACGTGAG
CCTCACCTTGCCACTCGAAAGCCGTTGCACTCGCAGCTCCGAGTTTTTCG
ATCACTTGCGCGAAAATCGCACCCTTGAATCAGAACACGATACATCCAAG
TCTTGCCACGCTGCCTCTGAATATGGCTGCTGTTTCCCCTGCTGCCGCTA
GGGCCGAGCCAGGCCAATGGAAGAAGAACCTCTCAGCCCACGTCATTTGC
CCCGAGTGCAAAGAGGTTCCCCCGAATCTGGAGTTCCCTGGCTCTCACGA
AACTGTTTGCGGCTCATGTGGTCTGGTTCTCGCTGATCGGGAGATTGACA
TGCACTCAGAATGGCGTACATTCTCCAATGACGATCAGAACAACGACGAC
CCTTCTCGTGTTGGAGATGCCATGAACCCGCTTCTCAACGGTGATCAACT
AGAGACCCAGATTGCTAGTGGTGGGTCGGGCCGCGTTCGCGACCTTTACC
GTGCTCAGAACAAACAATCGAGTGAAAAGGCAAACAAGGCTCTTCTGGCA
GCCTACAAGGAAATTGGTGCTCTTTGCGATGGTTTTAACATTCAGAAGAA
CGTGGCAGACACAGCGAAGTATCTCTTCAAGATTGTGGACGATGCCAAGG
CATTCAAGGGAAAGTCCCAGGATGTGATCATTGCAGGCTGTATATTTATC
GCCTGTCGCCAGTGCAAGGTGCCACGTACCTTCACTGAGATCTTCGCGGT
GACCAAGGTCACAAGGAAGGAAATTGGGCGTATCTACAAAGCTCTGGAGA
AGTTTTTCACTGCACAGAACCTCGAGCGGATCAATGCCGTGGTCTCCAGC
GGAGGTGTCCCTGATCCCAACGACACATACACCGCCACTACTTCCACCAA
GCCTAGTGACCTTTGCAACCGTTTCTGTAACCTTCTGGATCTGCCCTTCC
AGGTTACCAGCGTCTCCTCTGCTTTATCCGATCGCGTGACAACGATGGGA
GATTTGGCCGGACGTTCTCCCCTGTCCATCGTGGCAGCCTGCATCTACAT
GGCATCGTACCTGATGGGACACGGCAAGAGCGCCAAGGAGATATCCCACG
TGGCCCATGTCAGCGATGGTACGATCCGCGGTGCTTACAAGCAGCTATAT
GCTGAAAGAGAGCGCCTCATCGATCCCGAGTGGATCAAAGATGGGAAGGG
TGACCTGAAGAACCTACCTAACAGTTAAATGGGCTGGACCTGGCCCCATC
TCAAAAGCAGTTTGACTACCTGACATTTGCCGGAATAGCTGCTCTTGCTT
CACACCCAACTCACTAGTCAAACATCGCTACTAAGCCACTGAGTATAAAA
ATGATACCCCAAATCACCTAGAGATATACAAAGAAGAGAGAGAAGTACCA
AAAACAAAAACCACATATAATCCAAACCATTTCATACCGTTGCTTCACCA
TATCAAACCAAGAATGACAATTTGCGAGACGAGGACTCGGTAGTATACAA
ACGAATGAGAACAAACCAAATAGGGAAATTGAAACCTGAAACTCGAAAAT
AGCTGGTTCTCAAACCCACGCGCCGTCATATTTTTTTTATATACCATCTT
CCAGTTCTGTCCACCCATTCCGGAGCGATTTCCAAAAGCAAGCCCCGATG
GTCAGACACTCTTTTCTTTTCTTTCAGTTCTCACTTGAATTTGCCAAACT
TTCCCAAGTCCATTTATTTATCCATTTGCTCCGTCTTTTAGCCTTCATTG
TGCGTAATTAACCCAGACATAATGAATTAGCTTAGTAGCATGCATGTCAT
GTATGCATCATCTCTATTCAATCAATCAATTACAGTCATTATTACTAG back to topCoding sequence (CDS) from alignment at ch4:4732381..4734778+ >KJC3_006115-T1 ID=KJC3_006115-T1|Name=KJC3_006115-T1|organism=Aspergillus niger KJC3|type=CDS|length=1056bp|location=Sequence derived from alignment at ch4:4732381..4734778+ (Aspergillus niger KJC3)
ATGGCTGCTGTTTCCCCTGCTGCCGCTAGGGCCGAGCCAGGCCAATGGAA
GAAGAACCTCTCAGCCCACGTCATTTGCCCCGAGTGCAAAGAGGTTCCCC
CGAATCTGGAGTTCCCTGGCTCTCACGAAACTGTTTGCGGCTCATGTGGT
CTGGTTCTCGCTGATCGGGAGATTGACATGCACTCAGAATGGCGTACATT
CTCCAATGACGATCAGAACAACGACGACCCTTCTCGTGTTGGAGATGCCA
TGAACCCGCTTCTCAACGGTGATCAACTAGAGACCCAGATTGCTAGTGGT
GGGTCGGGCCGCGTTCGCGACCTTTACCGTGCTCAGAACAAACAATCGAG
TGAAAAGGCAAACAAGGCTCTTCTGGCAGCCTACAAGGAAATTGGTGCTC
TTTGCGATGGTTTTAACATTCAGAAGAACGTGGCAGACACAGCGAAGTAT
CTCTTCAAGATTGTGGACGATGCCAAGGCATTCAAGGGAAAGTCCCAGGA
TGTGATCATTGCAGGCTGTATATTTATCGCCTGTCGCCAGTGCAAGGTGC
CACGTACCTTCACTGAGATCTTCGCGGTGACCAAGGTCACAAGGAAGGAA
ATTGGGCGTATCTACAAAGCTCTGGAGAAGTTTTTCACTGCACAGAACCT
CGAGCGGATCAATGCCGTGGTCTCCAGCGGAGGTGTCCCTGATCCCAACG
ACACATACACCGCCACTACTTCCACCAAGCCTAGTGACCTTTGCAACCGT
TTCTGTAACCTTCTGGATCTGCCCTTCCAGGTTACCAGCGTCTCCTCTGC
TTTATCCGATCGCGTGACAACGATGGGAGATTTGGCCGGACGTTCTCCCC
TGTCCATCGTGGCAGCCTGCATCTACATGGCATCGTACCTGATGGGACAC
GGCAAGAGCGCCAAGGAGATATCCCACGTGGCCCATGTCAGCGATGGTAC
GATCCGCGGTGCTTACAAGCAGCTATATGCTGAAAGAGAGCGCCTCATCG
ATCCCGAGTGGATCAAAGATGGGAAGGGTGACCTGAAGAACCTACCTAAC
AGTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0017025 | TBP-class protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006352 | DNA-templated transcription, initiation |
| GO:0070897 | transcription preinitiation complex assembly |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006115-T1.utr5p1 | KJC3_006115-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006115-T1.utr3p1 | KJC3_006115-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262PAY |
| DBxref | InterPro:IPR036915 |
| DBxref | InterPro:IPR023486 |
| DBxref | InterPro:IPR013137 |
| DBxref | InterPro:IPR013150 |
| DBxref | InterPro:IPR013763 |
| DBxref | InterPro:IPR000812 |
| DBxref | PFAM:PF08271 |
| DBxref | PFAM:PF00382 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4732381..4734778 + |
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