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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5059315..5062528+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006218-T1 ID=KJC3_006218-T1|Name=KJC3_006218-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3214bp|location=Sequence derived from alignment at ch4:5059315..5062528+ (Aspergillus niger KJC3)
GTCTTCTGTTCGGCATTTATATTTATACTCCTTCCCCAGGATTGTCTGGT
CGCATTTCTTGAGATTGGCTGGTCCAGATCAAGCTCCTATCGTTTCTTCT
TATCGGTCCATCTACACTACTCTGTACTAACAGCCTTAATCGCCCTGCAC
CACTTGCGACCGTCTCCCGCCTCCCGTCCACCCTTCTCCGTCCTCCGCCC
CGGTCATTTGGCAACTTACTCAACCTTACTCAAACAACCCTCTCTCCTCC
TCAGGGTCCTCACCATTCCAACTACCTCGCCACCACCTTCCGTCTCTTTA
TTTCTGCGCCAGAAATCTGTCGCAGAAATAGTATCCTTTGAAGACATACA
GCCTGGTGCTATCCACAACTGCGCTTCTAGTTCGCTGGTTACAGTAGCCG
AGGCCACGCTAGCGAGCGAGTAGCGGCGCTGCGGTTCCAGTGGCACGACT
TCGGACTGCCGTCGCGTGAGAGCATCTACCAGAATTCTTCATTCAGCAAG
ATGGAAAGCACACGGCCTCAGGAGGACAAAACCATGTCCTCCCCTTCGCC
CTTCACATCGATCTTCGGTGGCCCCGCCGAGTCCGCGGAGGAGATCGATG
CTGATGCCGACAATAGCCAGCTGAAGCCCCACAATCGCAGCAACGTAACA
GCAACTTCGGCCAAGCTCGTGGGCAAAAGTGTCGCCCCTTTCCTCGCAAA
GCACGTTCCCGACCAATACGCCCCCCTCGGATCGCAAAATAGAGAACCTG
CCGCCTTGAGCAGCGCAAATTCCCGCTATTGCTACCGACATCGCCCAGAC
CGTAAGTGCCGCCGGCAGGCCGACGAACCGACAATGGACAAATTGCAACG
GGTATGTCTTCTACCAATATCATCCGAAGGACCAAGCAGAAAATGTCTGC
CATTTATGATCGTGGACTAACGGGTACCCAGGAGTTGGAGTCGCTCCCTC
AGAGTGATCAGCAGGGCATTGCGCATGTTTGGTCGCTCTTCTCAGCCGCC
CCAGCCAAGCACCGAAAACTCATACTCCAGGGAATTATGGCTCAATGCTG
CTTCCCGCAACTCTCGTTCATTTCCACCACCGTCCGTGACCTCATCCGAA
TCGATTTCATTGCCGCTCTTCCTCCGGAGATCTCTTTCAAAATCCTGTGT
TACCTGGACACCACTTCTCTTTGCAAAGCTGCACAAGTCTCGCGACGTTG
GAGGGCACTGGCCGACGACGACGTGGTCTGGCATCGCATGTGCGAGCAAC
ATATTCATCGCAAGTGCAAGAAATGTGGCTGGGGACTTCCCCTTTTGGAT
CGGAAGAGGCTCCGTGAATCGAAGCGCGAGATTGAGATTCGCGCTACGAC
CTGGGACGTCAACGGCACGTCTCCGAAAGCGACTCCTGCGCTCCCTGAAG
ATGCTTCGCCTGTCGCCGACAGCTCTGGTACCGGTAAACGAAAGCCTGAG
CCAAGCGAGGAAGAGACTGCGGTCGTCAAACGCCACTGTCAGTCACTAGC
GATGCGCCCAGAAGGAAGCGAAGATTATTTCAAAACCCGATACAGGCCTT
GGAAGGAGGTGTACAAGGATCGTTTCAAAGTGGGCACAAACTGGAAGTAC
GGACGCTGTTCGATCAGAATCTTCAAAGGCCATACGAATGGCGTGATGTG
CTTGCAATTCGAGGACAACATCCTGGCAACCGGATCTTACGACGCGACGA
TTAAGATTTGGGATACCGACACTGGCCAGGAAATTCGTACTCTTCGGGGA
CACGAGTCGGGTATCCGCTGCCTGCAGTTTGATGACACGAAGTTGATCAG
TGGTAGTATGGATGGCAGCGTGAAAGTCTGGAACTGGCGCACTGGCGATT
GCATTTCCACGTATACTGGTCATCGTGGCGGAGTAATCGGGCTGCACTTC
GATGCTACTATTCTCGCGTCCGCATCTGTTGATAAGACCGTGAAGATCTG
GAATTTCGAGGACAAATCAACTTGCCTCTTACGAGGACACACGGACTGGG
TCAACGCGGTCCGGGTCGATACGGCTTCTCGCACGGTGTTCTCGGCGTCC
GACGACTGCACCGTTCGGCTTTGGGATTTGGATACCAAGTCTTGCATTCG
GACATTCCATGGCCATGTGGGACAGGTTCAACAAGTGGTTCCTCTTCCCC
GGGAATTTGAATTTGAAGAGCATGATGTTGAGTGTGAGAACGACAACCTC
AGCACTGTCTCCGGCGACACCGAGCCGGCATCTCTTCAGGCCACGCTTGG
CCTCGAGTCGAATGCGGTTATTTCTCAGAGTTCACCGTTTGGTCCTTCTT
TTGAGTCAGGCCGGACAGCACCACCGCGCTACATTGTTACTAGCGCCTTG
GACTCGACCATCCGTTTATGGGAGACTAGCACTGGCCGGTGCTTGCGTAC
GTTCTTTGGCCATCTGGAGGGTGTCTGGGCCCTGGCAGCGGATACACTGC
GTATTGTTTCTGGGGCCGAGGACCGGATGATCAAGATCTGGGATCCGCGA
ACCGGCAAGTGTGAGCGCACGTTCACCGGCCACTCCGGCCCTGTCACCTG
CATCGGACTTGGCGACAGTCGGTTTGCTACTGGTAGTGAGGACTGCGAAG
TGCGCATGTACAGCTTTCAGAGCTGATCTGGACATGCTTTATATTGGTGT
TGTTTCTTCTGGCCTTTGATGCTGGCTTAATGTTCTTTCTGATGATGAAT
ACCCTTGACTAGCGCAGTTACTTTTTTTGATTGGATGGGTCTGGCTGGCA
GAGGGATGGAGCATTTTTTTTAAACACTTATGATGGGGTTTCGGGCGTTG
TGATTTCAAAATGTGTACTTTAGCTACAGAACGATTAATCTACCGCATCA
GTCTGCATATTGCCTGTTTCGAGCAAGTCTTTTTCGTCAGGTCTCATGAT
GAAGCGGCAACTCCAGACGCCGCCCCGTAACTACAGGATAGCGTGGGTAT
CAAATATGCTCTTGATCTTAATTCTCTTATCATTCAGGTGGAATCATGAA
GTCATGAACATTTAAGCAGCCAAATCGCCAGCACTTATTACATAGATTGT
TACCATCCATCATAATCATCGTCATAACTTTCCTGTCTTGGAGTTCTAGG
CAAGCCCCTCTTGGGCGCGAGCGGTGACGGTGACGGGGATCTGGAAAGTT
GACGTTCAATTGCTCTGTTAGATATTCCCATGGGCACCAGATTCCTCGAG
GAAAGAGTAACAAG back to topCoding sequence (CDS) from alignment at ch4:5059315..5062528+ >KJC3_006218-T1 ID=KJC3_006218-T1|Name=KJC3_006218-T1|organism=Aspergillus niger KJC3|type=CDS|length=4092bp|location=Sequence derived from alignment at ch4:5059315..5062528+ (Aspergillus niger KJC3)
ATGGAAAGCACACGGCCTCAGGAGGACAAAACCATGTCCTCCCCTTCGCC
CTTCACATCGATCTTCGGTGGCCCCGCCGAGTCCGCGGAGGAGATCGATG
CTGATGCCGACAATAGCCAGCTGAAGCCCCACAATCGCAGCAACGTAACA
GCAACTTCGGCCAAGCTCGTGGGCAAAAGTGTCGCCCCTTTCCTCGCAAA
GCACGTTCCCGACCAATACGCCCCCCTCGGATCGCAAAATAGAGAACCTG
CCGCCTTGAGCAGCGCAAATTCCCGCTATTGCTACCGACATCGCCCAGAC
CGTAAGTGCCGCCGGCAGGCCGACGAACCGACAATGGACAAATTGCAACG
GGAGTTGGAGTCGCTCCCTCAGAGTGATCAGCAGGGCATTGCGCATGTTT
GGTCGCTCTTCTCAGCCGCCCCAGCCAAGCACCGAAAACTCATACTCCAG
GGAATTATGGCTCAATGCTGCTTCCCGCAACTCTCGTTCATTTCCACCAC
CGTCCGTGACCTCATCCGAATCGATTTCATTGCCGCTCTTCCTCCGGAGA
TCTCTTTCAAAATCCTGTGTTACCTGGACACCACTTCTCTTTGCAAAGCT
GCACAAGTCTCGCGACGTTGGAGGGCACTGGCCGACGACGACGTGGTCTG
GCATCGCATGTGCGAGCAACATATTCATCGCAAGTGCAAGAAATGTGGCT
GGGGACTTCCCCTTTTGGATCGGAAGAGGCTCCGTGAATCGAAGCGCGAG
ATTGAGATTCGCGCTACGACCTGGGACGTCAACGGCACGTCTCCGAAAGC
GACTCCTGCGCTCCCTGAAGATGCTTCGCCTGTCGCCGACAGCTCTGGTA
CCGGTAAACGAAAGCCTGAGCCAAGCGAGGAAGAGACTGCGGTCGTCAAA
CGCCACTGTCAGTCACTAGCGATGCGCCCAGAAGGAAGCGAAGATTATTT
CAAAACCCGATACAGGCCTTGGAAGGAGGTGTACAAGGATCGTTTCAAAG
TGGGCACAAACTGGAAGTACGGACGCTGTTCGATCAGAATCTTCAAAGGC
CATACGAATGGCGTGATGTGCTTGCAATTCGAGGACAACATCCTGGCAAC
CGGATCTTACGACGCGACGATTAAGATTTGGGATACCGACACTGGCCAGG
AAATTCGTACTCTTCGGGGACACGAGTCGGGTATCCGCTGCCTGCAGTTT
GATGACACGAAGTTGATCAGTGGTAGTATGGATGGCAGCGTGAAAGTCTG
GAACTGGCGCACTGGCGATTGCATTTCCACGTATACTGGTCATCGTGGCG
GAGTAATCGGGCTGCACTTCGATGCTACTATTCTCGCGTCCGCATCTGTT
GATAAGACCGTGAAGATCTGGAATTTCGAGGACAAATCAACTTGCCTCTT
ACGAGGACACACGGACTGGGTCAACGCGGTCCGGGTCGATACGGCTTCTC
GCACGGTGTTCTCGGCGTCCGACGACTGCACCGTTCGGCTTTGGGATTTG
GATACCAAGTCTTGCATTCGGACATTCCATGGCCATGTGGGACAGGTTCA
ACAAGTGGTTCCTCTTCCCCGGGAATTTGAATTTGAAGAGCATGATGTTG
AGTGTGAGAACGACAACCTCAGCACTGTCTCCGGCGACACCGAGCCGGCA
TCTCTTCAGGCCACGCTTGGCCTCGAGTCGAATGCGGTTATTTCTCAGAG
TTCACCGTTTGGTCCTTCTTTTGAGTCAGGCCGGACAGCACCACCGCGCT
ACATTGTTACTAGCGCCTTGGACTCGACCATCCGTTTATGGGAGACTAGC
ACTGGCCGGTGCTTGCGTACGTTCTTTGGCCATCTGGAGGGTGTCTGGGC
CCTGGCAGCGGATACACTGCGTATTGTTTCTGGGGCCGAGGACCGGATGA
TCAAGATCTGGGATCCGCGAACCGGCAAGTGTGAGCGCACGTTCACCGGC
CACTCCGGCCCTGTCACCTGCATCGGACTTGGCGACAGTCGGTTTGCTAC
TGGTAGTGAGGACTGCGAAGTGCGCATGTACAGCTTTCAGAGCTGAATGG
AAAGCACACGGCCTCAGGAGGACAAAACCATGTCCTCCCCTTCGCCCTTC
ACATCGATCTTCGGTGGCCCCGCCGAGTCCGCGGAGGAGATCGATGCTGA
TGCCGACAATAGCCAGCTGAAGCCCCACAATCGCAGCAACGTAACAGCAA
CTTCGGCCAAGCTCGTGGGCAAAAGTGTCGCCCCTTTCCTCGCAAAGCAC
GTTCCCGACCAATACGCCCCCCTCGGATCGCAAAATAGAGAACCTGCCGC
CTTGAGCAGCGCAAATTCCCGCTATTGCTACCGACATCGCCCAGACCGTA
AGTGCCGCCGGCAGGCCGACGAACCGACAATGGACAAATTGCAACGGGAG
TTGGAGTCGCTCCCTCAGAGTGATCAGCAGGGCATTGCGCATGTTTGGTC
GCTCTTCTCAGCCGCCCCAGCCAAGCACCGAAAACTCATACTCCAGGGAA
TTATGGCTCAATGCTGCTTCCCGCAACTCTCGTTCATTTCCACCACCGTC
CGTGACCTCATCCGAATCGATTTCATTGCCGCTCTTCCTCCGGAGATCTC
TTTCAAAATCCTGTGTTACCTGGACACCACTTCTCTTTGCAAAGCTGCAC
AAGTCTCGCGACGTTGGAGGGCACTGGCCGACGACGACGTGGTCTGGCAT
CGCATGTGCGAGCAACATATTCATCGCAAGTGCAAGAAATGTGGCTGGGG
ACTTCCCCTTTTGGATCGGAAGAGGCTCCGTGAATCGAAGCGCGAGATTG
AGATTCGCGCTACGACCTGGGACGTCAACGGCACGTCTCCGAAAGCGACT
CCTGCGCTCCCTGAAGATGCTTCGCCTGTCGCCGACAGCTCTGGTACCGG
TAAACGAAAGCCTGAGCCAAGCGAGGAAGAGACTGCGGTCGTCAAACGCC
ACTGTCAGTCACTAGCGATGCGCCCAGAAGGAAGCGAAGATTATTTCAAA
ACCCGATACAGGCCTTGGAAGGAGGTGTACAAGGATCGTTTCAAAGTGGG
CACAAACTGGAAGTACGGACGCTGTTCGATCAGAATCTTCAAAGGCCATA
CGAATGGCGTGATGTGCTTGCAATTCGAGGACAACATCCTGGCAACCGGA
TCTTACGACGCGACGATTAAGATTTGGGATACCGACACTGGCCAGGAAAT
TCGTACTCTTCGGGGACACGAGTCGGGTATCCGCTGCCTGCAGTTTGATG
ACACGAAGTTGATCAGTGGTAGTATGGATGGCAGCGTGAAAGTCTGGAAC
TGGCGCACTGGCGATTGCATTTCCACGTATACTGGTCATCGTGGCGGAGT
AATCGGGCTGCACTTCGATGCTACTATTCTCGCGTCCGCATCTGTTGATA
AGACCGTGAAGATCTGGAATTTCGAGGACAAATCAACTTGCCTCTTACGA
GGACACACGGACTGGGTCAACGCGGTCCGGGTCGATACGGCTTCTCGCAC
GGTGTTCTCGGCGTCCGACGACTGCACCGTTCGGCTTTGGGATTTGGATA
CCAAGTCTTGCATTCGGACATTCCATGGCCATGTGGGACAGGTTCAACAA
GTGGTTCCTCTTCCCCGGGAATTTGAATTTGAAGAGCATGATGTTGAGTG
TGAGAACGACAACCTCAGCACTGTCTCCGGCGACACCGAGCCGGCATCTC
TTCAGGCCACGCTTGGCCTCGAGTCGAATGCGGTTATTTCTCAGAGTTCA
CCGTTTGGTCCTTCTTTTGAGTCAGGCCGGACAGCACCACCGCGCTACAT
TGTTACTAGCGCCTTGGACTCGACCATCCGTTTATGGGAGACTAGCACTG
GCCGGTGCTTGCGTACGTTCTTTGGCCATCTGGAGGGTGTCTGGGCCCTG
GCAGCGGATACACTGCGTATTGTTTCTGGGGCCGAGGACCGGATGATCAA
GATCTGGGATCCGCGAACCGGCAAGTGTGAGCGCACGTTCACCGGCCACT
CCGGCCCTGTCACCTGCATCGGACTTGGCGACAGTCGGTTTGCTACTGGT
AGTGAGGACTGCGAAGTGCGCATGTACAGCTTTCAGAGCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006218-T1.utr5p1 | KJC3_006218-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09260KIY |
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR036047 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR019775 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001810 |
| DBxref | InterPro:IPR001680 |
| DBxref | InterPro:IPR020472 |
| DBxref | PFAM:PF00400 |
| DBxref | PFAM:PF12937 |
| DBxref | PFAM:PF00646 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5059315..5062528 + |
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