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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5200430..5201824+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006269-T1 ID=KJC3_006269-T1|Name=KJC3_006269-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1395bp|location=Sequence derived from alignment at ch4:5200430..5201824+ (Aspergillus niger KJC3)
CAATAACATTTCTCCATGTTTTTACATGTCACACGGAGGGCTTTCTAGAT
CCTCTATGTTCTCTCAGATTGTGACAGCAGCAAAGGGGTTATTTTCTCGA
CAGGACTCCGACGAATCTTCCCTCAAAAATCTGCGCCCTACAGCTACTAT
CACCACCTCCGGCGCCCCATCTGGAATCAAAAGCAGCCCCAACATACCCA
AAATGGTCACAGCAACAAGACAGCGGAAATTCCCCGCTGAGCAACAACAA
TCCTCGACAGAGCCCGAAGTCAATGGATCGAATGGAAAGCGCAAGTCCGA
ACCCGTGGGCGCTGAACCCACTGAGACTCAGAGCAAGAACAAGCGGCGGA
AGAGAAGCAGTCTAGAGGCGACGACACAAGAATCGGAGAGCAAACCTTCG
AGTAACAAGAAGTCGAAGAAGATGACGGAACCGACTGAGGAGCCTGAGGA
ACAGCAAGAGGAGGAAAAGAAACCTTCAGCAGCGCCGGCGGCGAAGAAGC
ACTTCCGCTTTGATAGCGAGGAGCCGGAAATCCCGGAGGTTGCGGCTGTT
GAGGATACCACGGAGGCGCAACAGGATCAGGGTGATGAGAGCAGTGATGA
TGATGAGGCCCCAGAGACGGTCGACAACTCTGCACAGCTGTCGAAGATGA
GGATGGAAGCTAAGAAGCAGGAACGGGCTAGGCAAATGTGAGTGATGCGC
GCGATTTCAGCCTTGGTGCTGTTTCTGGATACGATTCTAACGTTTTCTAC
AGAGAGGAGCAATTGAAGCGGGACAAACGGAAACAGTTGGATGAGTTGCG
CAAATCCCAGGCGAAGTTGGCGAAGAAAAAGGAAGCAAAGGCCGAAGATC
TGTTGTCGGAAAGCACAGAGACCCTCCAAGGAACTACTACGCAAGATGCA
CGACGCTCGGCCCTCCCTGCTCTTCTTCCCGATGATATCCTCAATGCGGC
CCCCGATGTCCGGCCCCCGACACCTCCCGCGGAAGAGAGGACTATCATGC
AGAAGAAGCCCAACAAGCTACGATTCTTGGACAAGAAGGAGAAGCCGCCG
AAGGATGCGCGGGTGGGAGATGTTACTATCCGGGTGTTGGATGATGGTGT
ATCCAAAAAGCCCTCAAAGACGGTTCTGCCGCCTAAGGCCTCAAAAACCG
GGCGCAATGCCAAGCAGAATTGGCTGAACAAATCCCGCAACACAGGCGCT
TTGAATGGGTTGAGAAGGACGACTGGCGGTTCCTCGGGATTCGTGCGCAA
ATAGCAGGTCTTGGGCGCTCTTTTACGCTTTCCCGTCTCGAGAATCAATC
AATCAAAATATTAATAGAGAATGTTGTGGATCCAACCATGGGCGTAGTGT
TACGATGTGCATAACATAGCAACTATTTACTTCTTTAGGGTTAGA back to topCoding sequence (CDS) from alignment at ch4:5200430..5201824+ >KJC3_006269-T1 ID=KJC3_006269-T1|Name=KJC3_006269-T1|organism=Aspergillus niger KJC3|type=CDS|length=2328bp|location=Sequence derived from alignment at ch4:5200430..5201824+ (Aspergillus niger KJC3)
ATGTCACACGGAGGGCTTTCTAGATCCTCTATGTTCTCTCAGATTGTGAC
AGCAGCAAAGGGGTTATTTTCTCGACAGGACTCCGACGAATCTTCCCTCA
AAAATCTGCGCCCTACAGCTACTATCACCACCTCCGGCGCCCCATCTGGA
ATCAAAAGCAGCCCCAACATACCCAAAATGGTCACAGCAACAAGACAGCG
GAAATTCCCCGCTGAGCAACAACAATCCTCGACAGAGCCCGAAGTCAATG
GATCGAATGGAAAGCGCAAGTCCGAACCCGTGGGCGCTGAACCCACTGAG
ACTCAGAGCAAGAACAAGCGGCGGAAGAGAAGCAGTCTAGAGGCGACGAC
ACAAGAATCGGAGAGCAAACCTTCGAGTAACAAGAAGTCGAAGAAGATGA
CGGAACCGACTGAGGAGCCTGAGGAACAGCAAGAGGAGGAAAAGAAACCT
TCAGCAGCGCCGGCGGCGAAGAAGCACTTCCGCTTTGATAGCGAGGAGCC
GGAAATCCCGGAGGTTGCGGCTGTTGAGGATACCACGGAGGCGCAACAGG
ATCAGGGTGATGAGAGCAGTGATGATGATGAGGCCCCAGAGACGGTCGAC
AACTCTGCACAGCTGTCGAAGATGAGGATGGAAGCTAAGAAGCAGGAACG
GGCTAGGCAAATAGAGGAGCAATTGAAGCGGGACAAACGGAAACAGTTGG
ATGAGTTGCGCAAATCCCAGGCGAAGTTGGCGAAGAAAAAGGAAGCAAAG
GCCGAAGATCTGTTGTCGGAAAGCACAGAGACCCTCCAAGGAACTACTAC
GCAAGATGCACGACGCTCGGCCCTCCCTGCTCTTCTTCCCGATGATATCC
TCAATGCGGCCCCCGATGTCCGGCCCCCGACACCTCCCGCGGAAGAGAGG
ACTATCATGCAGAAGAAGCCCAACAAGCTACGATTCTTGGACAAGAAGGA
GAAGCCGCCGAAGGATGCGCGGGTGGGAGATGTTACTATCCGGGTGTTGG
ATGATGGTGTATCCAAAAAGCCCTCAAAGACGGTTCTGCCGCCTAAGGCC
TCAAAAACCGGGCGCAATGCCAAGCAGAATTGGCTGAACAAATCCCGCAA
CACAGGCGCTTTGAATGGGTTGAGAAGGACGACTGGCGGTTCCTCGGGAT
TCGTGCGCAAATAGATGTCACACGGAGGGCTTTCTAGATCCTCTATGTTC
TCTCAGATTGTGACAGCAGCAAAGGGGTTATTTTCTCGACAGGACTCCGA
CGAATCTTCCCTCAAAAATCTGCGCCCTACAGCTACTATCACCACCTCCG
GCGCCCCATCTGGAATCAAAAGCAGCCCCAACATACCCAAAATGGTCACA
GCAACAAGACAGCGGAAATTCCCCGCTGAGCAACAACAATCCTCGACAGA
GCCCGAAGTCAATGGATCGAATGGAAAGCGCAAGTCCGAACCCGTGGGCG
CTGAACCCACTGAGACTCAGAGCAAGAACAAGCGGCGGAAGAGAAGCAGT
CTAGAGGCGACGACACAAGAATCGGAGAGCAAACCTTCGAGTAACAAGAA
GTCGAAGAAGATGACGGAACCGACTGAGGAGCCTGAGGAACAGCAAGAGG
AGGAAAAGAAACCTTCAGCAGCGCCGGCGGCGAAGAAGCACTTCCGCTTT
GATAGCGAGGAGCCGGAAATCCCGGAGGTTGCGGCTGTTGAGGATACCAC
GGAGGCGCAACAGGATCAGGGTGATGAGAGCAGTGATGATGATGAGGCCC
CAGAGACGGTCGACAACTCTGCACAGCTGTCGAAGATGAGGATGGAAGCT
AAGAAGCAGGAACGGGCTAGGCAAATAGAGGAGCAATTGAAGCGGGACAA
ACGGAAACAGTTGGATGAGTTGCGCAAATCCCAGGCGAAGTTGGCGAAGA
AAAAGGAAGCAAAGGCCGAAGATCTGTTGTCGGAAAGCACAGAGACCCTC
CAAGGAACTACTACGCAAGATGCACGACGCTCGGCCCTCCCTGCTCTTCT
TCCCGATGATATCCTCAATGCGGCCCCCGATGTCCGGCCCCCGACACCTC
CCGCGGAAGAGAGGACTATCATGCAGAAGAAGCCCAACAAGCTACGATTC
TTGGACAAGAAGGAGAAGCCGCCGAAGGATGCGCGGGTGGGAGATGTTAC
TATCCGGGTGTTGGATGATGGTGTATCCAAAAAGCCCTCAAAGACGGTTC
TGCCGCCTAAGGCCTCAAAAACCGGGCGCAATGCCAAGCAGAATTGGCTG
AACAAATCCCGCAACACAGGCGCTTTGAATGGGTTGAGAAGGACGACTGG
CGGTTCCTCGGGATTCGTGCGCAAATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006364 | rRNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030515 | snoRNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006269-T1.utr5p1 | KJC3_006269-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006269-T1.utr3p1 | KJC3_006269-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013268 |
| DBxref | PFAM:PF08297 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5200430..5201824 + |
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