|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5208770..5210522- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006273-T1 ID=KJC3_006273-T1|Name=KJC3_006273-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1753bp|location=Sequence derived from alignment at ch4:5208770..5210522- (Aspergillus niger KJC3)
ATGGTGTACGGCGGGAAGCCAAGTACGGGGTGCCACTTGTGTCGCAAACG
GAAAATCAAGGTAGGACAGATCTGCAGCCTTGACATGTCATAGCAGATCA
TGTCCCTTGCATACCATTTCACCCCAATGAGTATGCTATTTATTTGTGGG
ACCCCACGCTAATCGCCCTCCCAGTGCGATGAAGGCCGTCCGGGATGCCG
GAACTGCGGCATATACGGCAAGCCATGTCCGGGCTACCGATCGGATGGGA
TCTTCAGAAATGAAACGCACAAAGTGCAACAACTGATGAATGACAAGGCC
AAAGCCTGCTCTTCCTCATCAAGTAGAACGCAAACGCAGCCCAGCAGCCA
TGATGTATCAGGCGGCGGCAAGGATCTCCAAAAGACGACATTGTCCGCTT
ATCAGATCAGCGATGCCACGTGGGAAGAAAGAGCCATTTGCTATTTCTTC
GATCAGTTTACCATTGTCGAATGTAATGCATTCGGCGGCATGGGACATCT
GGGGTTCCTCCCGTCTTTGTATGCCGATTGTCGAGATCAGAATGTGGGTA
ACCCCGCATCGATGTCTTTACGGTTAGCTGTCGATGCGACGGCCCTAATG
GCCCTGAGTAACAGGGTTAATGTGCCGGGTGTTGTGACTCAGGCGAGATA
TCGCTTCGGGTTGGCGCTGCGGCGTCTGCAGGAGGCGCTGGATCTGCCGC
TTGAGGCGGCGAAAGATGAGACGTTTGCGACGTTGGTTATTCTATCTCTA
TTTGAGGATATCTCGGGGGATCGGCATGGGCTTACTAGTGCGCATACGGT
GGGCTTTGAAGCGCTTACGAGACTGAGGGGGGAGAGTCAGCTTGGACATG
CAGCGGGACTGGATATGTTCAAGTATGCGTATGTTCGTATGGTGAGTCAA
TTCGTACACCTTGTTTTGATAAGAGGCGTGTGATTGCTGACCGATAATCC
AGCAAATCGAGTTCCTTCTGCTGAAGGGGAAACCCAGTCTGGACTCAGAC
CGTCTGGTTGAGCGTCTCGACAGTGCGGATCCGCTACAATCGCTTATGAT
ACTTGCGTCCAAGGTCAGGCAGCTGATTTCAGAGCCCTCATCTGCTTCGG
ATTCCTTGCAATCTTTCGGAATCACGAAGCTAGCGTCATGGATCGACTCC
TGCAGACACTTGGATTTAGAACTGGTCCAATGGACCCAAACCTTGCCGGA
ACTCTGGCTACCCCTCGAAACCCGCGCATACACGGGCGAGGATGTGCTCA
CGTACCGAGAGATGATTACTGCGGTTATTTGGGCCCACTACCGCGTCCTT
CGGATCTTTATCCATGGTGCCATGGCAGATCTTTTCCGAGCACTGGTCTC
TATGGTTAATTCCCCCGGGATTCAGCGAGAAGCGTCTCAGCATGAGGCAG
ATGGCTTACAGCTAAGCCTCGATATGATCTCCGATTCCTGTCGGAGTGTG
CCATTCTGCTTTGGGAAAATTGATATGTTTGGAAACCCGATGCCTCCGTC
CGAGCAGGGAATGTCGCGGGTTCGAGCTTTCTACCTCTACAGTATGCTGT
GGCCCCTGTGGTATATTCTGTCATGTGGGCTGGCTACGCCCGAACAGACC
CAGATGATCCGAGGCGTGATGGCCCGGACGGGCTCGGAAGCTGGCATCAA
GCTGGCTACTATGTTGGCGAGTTACGATGGCGAGGATGCTATGGCGAATA
TGCCCCAATTGTACTCTCTGGAACGTTCAGTGAGGGAGGTGTCTGTCATG
TGA back to topCoding sequence (CDS) from alignment at ch4:5208770..5210522- >KJC3_006273-T1 ID=KJC3_006273-T1|Name=KJC3_006273-T1|organism=Aspergillus niger KJC3|type=CDS|length=4734bp|location=Sequence derived from alignment at ch4:5208770..5210522- (Aspergillus niger KJC3)
CAAATCGAGTTCCTTCTGCTGAAGGGGAAACCCAGTCTGGACTCAGACCG
TCTGGTTGAGCGTCTCGACAGTGCGGATCCGCTACAATCGCTTATGATAC
TTGCGTCCAAGGTCAGGCAGCTGATTTCAGAGCCCTCATCTGCTTCGGAT
TCCTTGCAATCTTTCGGAATCACGAAGCTAGCGTCATGGATCGACTCCTG
CAGACACTTGGATTTAGAACTGGTCCAATGGACCCAAACCTTGCCGGAAC
TCTGGCTACCCCTCGAAACCCGCGCATACACGGGCGAGGATGTGCTCACG
TACCGAGAGATGATTACTGCGGTTATTTGGGCCCACTACCGCGTCCTTCG
GATCTTTATCCATGGTGCCATGGCAGATCTTTTCCGAGCACTGGTCTCTA
TGGTTAATTCCCCCGGGATTCAGCGAGAAGCGTCTCAGCATGAGGCAGAT
GGCTTACAGCTAAGCCTCGATATGATCTCCGATTCCTGTCGGAGTGTGCC
ATTCTGCTTTGGGAAAATTGATATGTTTGGAAACCCGATGCCTCCGTCCG
AGCAGGGAATGTCGCGGGTTCGAGCTTTCTACCTCTACAGTATGCTGTGG
CCCCTGTGGTATATTCTGTCATGTGGGCTGGCTACGCCCGAACAGACCCA
GATGATCCGAGGCGTGATGGCCCGGACGGGCTCGGAAGCTGGCATCAAGC
TGGCTACTATGTTGGCGAGTTACGATGGCGAGGATGCTATGGCGAATATG
CCCCAATTGTACTCTCTGGAACGTTCAGTGAGGGAGGTGTCTGTCATGTG
ATGCGATGAAGGCCGTCCGGGATGCCGGAACTGCGGCATATACGGCAAGC
CATGTCCGGGCTACCGATCGGATGGGATCTTCAGAAATGAAACGCACAAA
GTGCAACAACTGATGAATGACAAGGCCAAAGCCTGCTCTTCCTCATCAAG
TAGAACGCAAACGCAGCCCAGCAGCCATGATGTATCAGGCGGCGGCAAGG
ATCTCCAAAAGACGACATTGTCCGCTTATCAGATCAGCGATGCCACGTGG
GAAGAAAGAGCCATTTGCTATTTCTTCGATCAGTTTACCATTGTCGAATG
TAATGCATTCGGCGGCATGGGACATCTGGGGTTCCTCCCGTCTTTGTATG
CCGATTGTCGAGATCAGAATGTGGGTAACCCCGCATCGATGTCTTTACGG
TTAGCTGTCGATGCGACGGCCCTAATGGCCCTGAGTAACAGGGTTAATGT
GCCGGGTGTTGTGACTCAGGCGAGATATCGCTTCGGGTTGGCGCTGCGGC
GTCTGCAGGAGGCGCTGGATCTGCCGCTTGAGGCGGCGAAAGATGAGACG
TTTGCGACGTTGGTTATTCTATCTCTATTTGAGGATATCTCGGGGGATCG
GCATGGGCTTACTAGTGCGCATACGGTGGGCTTTGAAGCGCTTACGAGAC
TGAGGGGGGAGAGTCAGCTTGGACATGCAGCGGGACTGGATATGTTCAAG
TATGCGTATGTTCGTATGATGGTGTACGGCGGGAAGCCAAGTACGGGGTG
CCACTTGTGTCGCAAACGGAAAATCAAGCAAATCGAGTTCCTTCTGCTGA
AGGGGAAACCCAGTCTGGACTCAGACCGTCTGGTTGAGCGTCTCGACAGT
GCGGATCCGCTACAATCGCTTATGATACTTGCGTCCAAGGTCAGGCAGCT
GATTTCAGAGCCCTCATCTGCTTCGGATTCCTTGCAATCTTTCGGAATCA
CGAAGCTAGCGTCATGGATCGACTCCTGCAGACACTTGGATTTAGAACTG
GTCCAATGGACCCAAACCTTGCCGGAACTCTGGCTACCCCTCGAAACCCG
CGCATACACGGGCGAGGATGTGCTCACGTACCGAGAGATGATTACTGCGG
TTATTTGGGCCCACTACCGCGTCCTTCGGATCTTTATCCATGGTGCCATG
GCAGATCTTTTCCGAGCACTGGTCTCTATGGTTAATTCCCCCGGGATTCA
GCGAGAAGCGTCTCAGCATGAGGCAGATGGCTTACAGCTAAGCCTCGATA
TGATCTCCGATTCCTGTCGGAGTGTGCCATTCTGCTTTGGGAAAATTGAT
ATGTTTGGAAACCCGATGCCTCCGTCCGAGCAGGGAATGTCGCGGGTTCG
AGCTTTCTACCTCTACAGTATGCTGTGGCCCCTGTGGTATATTCTGTCAT
GTGGGCTGGCTACGCCCGAACAGACCCAGATGATCCGAGGCGTGATGGCC
CGGACGGGCTCGGAAGCTGGCATCAAGCTGGCTACTATGTTGGCGAGTTA
CGATGGCGAGGATGCTATGGCGAATATGCCCCAATTGTACTCTCTGGAAC
GTTCAGTGAGGGAGGTGTCTGTCATGTGATGCGATGAAGGCCGTCCGGGA
TGCCGGAACTGCGGCATATACGGCAAGCCATGTCCGGGCTACCGATCGGA
TGGGATCTTCAGAAATGAAACGCACAAAGTGCAACAACTGATGAATGACA
AGGCCAAAGCCTGCTCTTCCTCATCAAGTAGAACGCAAACGCAGCCCAGC
AGCCATGATGTATCAGGCGGCGGCAAGGATCTCCAAAAGACGACATTGTC
CGCTTATCAGATCAGCGATGCCACGTGGGAAGAAAGAGCCATTTGCTATT
TCTTCGATCAGTTTACCATTGTCGAATGTAATGCATTCGGCGGCATGGGA
CATCTGGGGTTCCTCCCGTCTTTGTATGCCGATTGTCGAGATCAGAATGT
GGGTAACCCCGCATCGATGTCTTTACGGTTAGCTGTCGATGCGACGGCCC
TAATGGCCCTGAGTAACAGGGTTAATGTGCCGGGTGTTGTGACTCAGGCG
AGATATCGCTTCGGGTTGGCGCTGCGGCGTCTGCAGGAGGCGCTGGATCT
GCCGCTTGAGGCGGCGAAAGATGAGACGTTTGCGACGTTGGTTATTCTAT
CTCTATTTGAGGATATCTCGGGGGATCGGCATGGGCTTACTAGTGCGCAT
ACGGTGGGCTTTGAAGCGCTTACGAGACTGAGGGGGGAGAGTCAGCTTGG
ACATGCAGCGGGACTGGATATGTTCAAGTATGCGTATGTTCGTATGATGG
TGTACGGCGGGAAGCCAAGTACGGGGTGCCACTTGTGTCGCAAACGGAAA
ATCAAGCAAATCGAGTTCCTTCTGCTGAAGGGGAAACCCAGTCTGGACTC
AGACCGTCTGGTTGAGCGTCTCGACAGTGCGGATCCGCTACAATCGCTTA
TGATACTTGCGTCCAAGGTCAGGCAGCTGATTTCAGAGCCCTCATCTGCT
TCGGATTCCTTGCAATCTTTCGGAATCACGAAGCTAGCGTCATGGATCGA
CTCCTGCAGACACTTGGATTTAGAACTGGTCCAATGGACCCAAACCTTGC
CGGAACTCTGGCTACCCCTCGAAACCCGCGCATACACGGGCGAGGATGTG
CTCACGTACCGAGAGATGATTACTGCGGTTATTTGGGCCCACTACCGCGT
CCTTCGGATCTTTATCCATGGTGCCATGGCAGATCTTTTCCGAGCACTGG
TCTCTATGGTTAATTCCCCCGGGATTCAGCGAGAAGCGTCTCAGCATGAG
GCAGATGGCTTACAGCTAAGCCTCGATATGATCTCCGATTCCTGTCGGAG
TGTGCCATTCTGCTTTGGGAAAATTGATATGTTTGGAAACCCGATGCCTC
CGTCCGAGCAGGGAATGTCGCGGGTTCGAGCTTTCTACCTCTACAGTATG
CTGTGGCCCCTGTGGTATATTCTGTCATGTGGGCTGGCTACGCCCGAACA
GACCCAGATGATCCGAGGCGTGATGGCCCGGACGGGCTCGGAAGCTGGCA
TCAAGCTGGCTACTATGTTGGCGAGTTACGATGGCGAGGATGCTATGGCG
AATATGCCCCAATTGTACTCTCTGGAACGTTCAGTGAGGGAGGTGTCTGT
CATGTGATGCGATGAAGGCCGTCCGGGATGCCGGAACTGCGGCATATACG
GCAAGCCATGTCCGGGCTACCGATCGGATGGGATCTTCAGAAATGAAACG
CACAAAGTGCAACAACTGATGAATGACAAGGCCAAAGCCTGCTCTTCCTC
ATCAAGTAGAACGCAAACGCAGCCCAGCAGCCATGATGTATCAGGCGGCG
GCAAGGATCTCCAAAAGACGACATTGTCCGCTTATCAGATCAGCGATGCC
ACGTGGGAAGAAAGAGCCATTTGCTATTTCTTCGATCAGTTTACCATTGT
CGAATGTAATGCATTCGGCGGCATGGGACATCTGGGGTTCCTCCCGTCTT
TGTATGCCGATTGTCGAGATCAGAATGTGGGTAACCCCGCATCGATGTCT
TTACGGTTAGCTGTCGATGCGACGGCCCTAATGGCCCTGAGTAACAGGGT
TAATGTGCCGGGTGTTGTGACTCAGGCGAGATATCGCTTCGGGTTGGCGC
TGCGGCGTCTGCAGGAGGCGCTGGATCTGCCGCTTGAGGCGGCGAAAGAT
GAGACGTTTGCGACGTTGGTTATTCTATCTCTATTTGAGGATATCTCGGG
GGATCGGCATGGGCTTACTAGTGCGCATACGGTGGGCTTTGAAGCGCTTA
CGAGACTGAGGGGGGAGAGTCAGCTTGGACATGCAGCGGGACTGGATATG
TTCAAGTATGCGTATGTTCGTATGATGGTGTACGGCGGGAAGCCAAGTAC
GGGGTGCCACTTGTGTCGCAAACGGAAAATCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5208770..5210522 - |
|
