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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5282594..5283991- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006296-T1 ID=KJC3_006296-T1|Name=KJC3_006296-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1398bp|location=Sequence derived from alignment at ch4:5282594..5283991- (Aspergillus niger KJC3)
ATGCAATGGCTACCTGCCTTTCCACATACACCGACCTTCTGCTTTATGCC
CGCCTCTGACATAAATATGGAACGCCTTCCAATGAATGAGAACCCCGCCG
GTGCCCACCATGGCAATGCGCCGCAGGGCTTTCCCCCGCAGAACAACACG
CTCGGACCCATGTCGCAAGGTCCCCCGCAATTACCGCCGCAGATGTTCAC
CACCGCTGCTCAGCTGTTGGATTTGACAGATAGTGCGTTATACCTGTTCA
CTTGGCCCCCATGGGCTTATCTCACAAATGGAGACGGGCGCAACCTGACA
GTGGTTTCCAGAAAAGCTAGTTCTAGTCCTTCGAGACGGGCGGAAGTTGA
TCGGAGTTTTGAGAAGCTGGGATCAGTTCGGTATGCGCCGCATGATAGAT
GAATACCGGTTGATGATATATATCTGACTGTGCGACCCTTGCTATGTGAC
TGCTGCAGCAAACCTTGTCCTTCAGGATACCATTGAACGTCTATATGCCG
GCAACCTCTACGCCGATATCCCGCGAGGTATATTTCTCGTCCGGGGTGAG
AATGTCTTGCTTCTGGGTGAAATCGTACGCAAACCTTCCATGCATCTTCT
TCGCTATTCATGTTTAGGGCGGGGAGTTGGCTAATTGGTGTGTCTTGCTT
CTCCGGGTTACAGGATCTCGACAAAGAAGATGACATTCCCCCTCATATCC
AGCGCGCGTCGTTCCAGGAAGTGTTTGAGCTGAAGAAGAAGGAAGACGGG
GCTCGAAAAGTTGGCGACAAGAAGCGCCATGGAAAGCTACAGACGCTGGG
CTTTGAGCCGGAGCATAGCGGAGAGATACTGTTTTAGACACGATGTCTGC
TTCAGTCTTTCTCCCTTTTCTACATCCGTGCTAGATCTGTCGCGTCCCAA
CTAGGGAATTCTAAAGCGACGCGACACAAGACACTTGGTGGATGTGTGCT
GGGCTATGCGGCCTCAAGGTATCAGTTGGCACTTGGTCCGTCTGAAATGC
CCTCCGGGACCGTTCGCCAGAGTCAGGCGATGTCGTGACTCAATATAGTG
GCGGCGGAGTTGAAGGATCTGCTGTGAGAAGGTGTGCGATAGGAAGAAGA
CTGTATGTGAGTAAGAGAGAGGAAGACGACAAGCTCCACCGGAAGGCCAG
TGGGAGCGCACAACAAAGACTGGTTGGATGGTCGACACAACGGGTTCGTG
GACGGCTTTGGAGTAGATCCCAGCTTGTCTCCAGCAGAAAGAGAGTCTGA
TCAAGGCGTGTGTGATTGTACGGGTGGAGGCTACGCTTGACGATTGTCAT
GTCTGATTACGCATTTTCATAGTATTATTTCCCTTACTTTCCTAGGCTAC
ATCTTCTCCGAACTGGACCACTTGAGTGAGACATTGACTACATTCACA back to topCoding sequence (CDS) from alignment at ch4:5282594..5283991- >KJC3_006296-T1 ID=KJC3_006296-T1|Name=KJC3_006296-T1|organism=Aspergillus niger KJC3|type=CDS|length=2364bp|location=Sequence derived from alignment at ch4:5282594..5283991- (Aspergillus niger KJC3)
GATCTCGACAAAGAAGATGACATTCCCCCTCATATCCAGCGCGCGTCGTT
CCAGGAAGTGTTTGAGCTGAAGAAGAAGGAAGACGGGGCTCGAAAAGTTG
GCGACAAGAAGCGCCATGGAAAGCTACAGACGCTGGGCTTTGAGCCGGAG
CATAGCGGAGAGATACTGTTTTAGCAAACCTTGTCCTTCAGGATACCATT
GAACGTCTATATGCCGGCAACCTCTACGCCGATATCCCGCGAGGTATATT
TCTCGTCCGGGGTGAGAATGTCTTGCTTCTGGGTGAAATCAAAAGCTAGT
TCTAGTCCTTCGAGACGGGCGGAAGTTGATCGGAGTTTTGAGAAGCTGGG
ATCAGTTCGATGCAATGGCTACCTGCCTTTCCACATACACCGACCTTCTG
CTTTATGCCCGCCTCTGACATAAATATGGAACGCCTTCCAATGAATGAGA
ACCCCGCCGGTGCCCACCATGGCAATGCGCCGCAGGGCTTTCCCCCGCAG
AACAACACGCTCGGACCCATGTCGCAAGGTCCCCCGCAATTACCGCCGCA
GATGTTCACCACCGCTGCTCAGCTGTTGGATTTGACAGATAGATCTCGAC
AAAGAAGATGACATTCCCCCTCATATCCAGCGCGCGTCGTTCCAGGAAGT
GTTTGAGCTGAAGAAGAAGGAAGACGGGGCTCGAAAAGTTGGCGACAAGA
AGCGCCATGGAAAGCTACAGACGCTGGGCTTTGAGCCGGAGCATAGCGGA
GAGATACTGTTTTAGCAAACCTTGTCCTTCAGGATACCATTGAACGTCTA
TATGCCGGCAACCTCTACGCCGATATCCCGCGAGGTATATTTCTCGTCCG
GGGTGAGAATGTCTTGCTTCTGGGTGAAATCAAAAGCTAGTTCTAGTCCT
TCGAGACGGGCGGAAGTTGATCGGAGTTTTGAGAAGCTGGGATCAGTTCG
ATGCAATGGCTACCTGCCTTTCCACATACACCGACCTTCTGCTTTATGCC
CGCCTCTGACATAAATATGGAACGCCTTCCAATGAATGAGAACCCCGCCG
GTGCCCACCATGGCAATGCGCCGCAGGGCTTTCCCCCGCAGAACAACACG
CTCGGACCCATGTCGCAAGGTCCCCCGCAATTACCGCCGCAGATGTTCAC
CACCGCTGCTCAGCTGTTGGATTTGACAGATAGATCTCGACAAAGAAGAT
GACATTCCCCCTCATATCCAGCGCGCGTCGTTCCAGGAAGTGTTTGAGCT
GAAGAAGAAGGAAGACGGGGCTCGAAAAGTTGGCGACAAGAAGCGCCATG
GAAAGCTACAGACGCTGGGCTTTGAGCCGGAGCATAGCGGAGAGATACTG
TTTTAGCAAACCTTGTCCTTCAGGATACCATTGAACGTCTATATGCCGGC
AACCTCTACGCCGATATCCCGCGAGGTATATTTCTCGTCCGGGGTGAGAA
TGTCTTGCTTCTGGGTGAAATCAAAAGCTAGTTCTAGTCCTTCGAGACGG
GCGGAAGTTGATCGGAGTTTTGAGAAGCTGGGATCAGTTCGATGCAATGG
CTACCTGCCTTTCCACATACACCGACCTTCTGCTTTATGCCCGCCTCTGA
CATAAATATGGAACGCCTTCCAATGAATGAGAACCCCGCCGGTGCCCACC
ATGGCAATGCGCCGCAGGGCTTTCCCCCGCAGAACAACACGCTCGGACCC
ATGTCGCAAGGTCCCCCGCAATTACCGCCGCAGATGTTCACCACCGCTGC
TCAGCTGTTGGATTTGACAGATAGATCTCGACAAAGAAGATGACATTCCC
CCTCATATCCAGCGCGCGTCGTTCCAGGAAGTGTTTGAGCTGAAGAAGAA
GGAAGACGGGGCTCGAAAAGTTGGCGACAAGAAGCGCCATGGAAAGCTAC
AGACGCTGGGCTTTGAGCCGGAGCATAGCGGAGAGATACTGTTTTAGCAA
ACCTTGTCCTTCAGGATACCATTGAACGTCTATATGCCGGCAACCTCTAC
GCCGATATCCCGCGAGGTATATTTCTCGTCCGGGGTGAGAATGTCTTGCT
TCTGGGTGAAATCAAAAGCTAGTTCTAGTCCTTCGAGACGGGCGGAAGTT
GATCGGAGTTTTGAGAAGCTGGGATCAGTTCGATGCAATGGCTACCTGCC
TTTCCACATACACCGACCTTCTGCTTTATGCCCGCCTCTGACATAAATAT
GGAACGCCTTCCAATGAATGAGAACCCCGCCGGTGCCCACCATGGCAATG
CGCCGCAGGGCTTTCCCCCGCAGAACAACACGCTCGGACCCATGTCGCAA
GGTCCCCCGCAATTACCGCCGCAGATGTTCACCACCGCTGCTCAGCTGTT
GGATTTGACAGATA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000956 | nuclear-transcribed mRNA catabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006296-T1.utr3p1 | KJC3_006296-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034104 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5282594..5283991 - |
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