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KJC3_006343-T1, KJC3_006343-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006343-T1
Unique NameKJC3_006343-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5403428..5405029+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006343-T1 ID=KJC3_006343-T1|Name=KJC3_006343-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1602bp|location=Sequence derived from alignment at ch4:5403428..5405029+ (Aspergillus niger KJC3)
CACCGTCGCAGATCACAAGAGCCACCCCTGGACTCAACATGCCTTCCACC
TACAAGAGGGACAAGCCGTGGGACACGGATGACATTGACAAGTGGAAGGT
ACGCTATATAACCCAAATCCAAAACATCGAAACACTCGAACCCGACCGAA
ACTAACCTGCAAATTTGTTGCGACCAGGTCGAACCCTTCCAAGCCGAAGA
CAATGTCGCCGGTAGTTTCGCTGAAGAATCTTCCTTCGCCACTCTTTTCC
CCAAGTACCGTGAAGTCTACCTGAAGGAAGCATGGCCCGTGGTGACAAGA
GCGCTCGAGAAATTCGGTATTGCCTGCACGCTGGATTTGGTCGAGGGTAG
CATGACAGTCAAGACGACCCGAAAGACGTTTGATCCTGCTGCGATTCTCA
AGGCCCGTGACTTGATCAAGCTGTTGTCGAGAAGTGTGCCGGTGCAACAG
GTAAATAACCCTGAATTTATGATTTCTAGGTTACCGATAAAGTTACTAAC
ACATTAAAACTAAATAGGCCCTCAAAATCCTCGAAGACGACGTCGCATGC
GACATCATCAAGATCCGCAACCAAGTCCGCAACAAGGAGCGCTTCGTTAA
GCGTCGTCAACGCATTCTCGGTCCCGGTGGATCCACCCTGAAAGCCTTGG
AGCTGCTCACAAGCACCTACATCCTGGTCCAGGGTAACACGGTCTCCGCC
ATGGGCCCCTACAAGGGTCTCAAGGAAGTCCGTCGCATCATCAACGACTG
CATGGCCAACATCCACCCGATCTACCACATTAAGGAACTCATGATCAAGC
GCGAATTGGCCAAGGACCCGACCCTGGCGAACGAATCCTGGGACCGCTTC
CTGCCTAACTTCAAGAAGCGCACGCTGTCCAAGCGTCGCGTGCCGTTCAA
GGTCACCGACAAGACGAAGAAGGTGTACACTCCTTTCCCGCCGGCGCCGG
AGAAGAGCAAGGTGGATCTCCAGATCGAGTCGGGCGAGTACTTCCTGTCC
AAGGAGGCGAAGGATCGGCAGCAGAAGGAGGAGGTCATGGAGAGACAGCG
GTTGAAGCGCGAAGAGAAGATGAAGGAGCGCGAGAAGGCGTTCGTGCCGC
CCGAGGAGCTGGACGCAGAGGAGAAGAAGAAGGAAAAGAAGGAGAAGAAG
GAGAAGAAAGAGAAGAAGAAGCGGAAGCGCGATTCCGAGGCCGCGGATGT
AGATGGCGACGATGGTGCCGAGAAGAAGGAAAAGAAGAAGAAGAAGAAGT
CCAAGTCGAAAGAGGATGCGTCGGATGGAGAGGCGTGATTCTTCTGCTGC
TGCTGTTGCTGCCTCCACCTTTTGACTTGGTATCTTCTGTCGGTCTCTAT
TTTCTTTCCTTTGCTTCGGTTATCACCCTTCGTATACTACGTTCGATATA
TAAGGCGCTTAGGCATAGCATGGGCTGGAGTTTTCTTTCTTTATTCTTCT
CACTTATGTGCCCCTGCTATTACCGGGAGGGGATATAAAAAAAGCCTGTG
TTGAGTGGGATTGGTCATGTATAACCTACTGAGTTGGGAGCTATTAGTCT
TTCCAGCTGACTTTATTTGATATGGTACGAGAATTAAACAGATATGAGTT
TC
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Coding sequence (CDS) from alignment at ch4:5403428..5405029+

>KJC3_006343-T1 ID=KJC3_006343-T1|Name=KJC3_006343-T1|organism=Aspergillus niger KJC3|type=CDS|length=3312bp|location=Sequence derived from alignment at ch4:5403428..5405029+ (Aspergillus niger KJC3)
ATGCCTTCCACCTACAAGAGGGACAAGCCGTGGGACACGGATGACATTGA
CAAGTGGAAGGTCGAACCCTTCCAAGCCGAAGACAATGTCGCCGGTAGTT
TCGCTGAAGAATCTTCCTTCGCCACTCTTTTCCCCAAGTACCGTGAAGTC
TACCTGAAGGAAGCATGGCCCGTGGTGACAAGAGCGCTCGAGAAATTCGG
TATTGCCTGCACGCTGGATTTGGTCGAGGGTAGCATGACAGTCAAGACGA
CCCGAAAGACGTTTGATCCTGCTGCGATTCTCAAGGCCCGTGACTTGATC
AAGCTGTTGTCGAGAAGTGTGCCGGTGCAACAGGCCCTCAAAATCCTCGA
AGACGACGTCGCATGCGACATCATCAAGATCCGCAACCAAGTCCGCAACA
AGGAGCGCTTCGTTAAGCGTCGTCAACGCATTCTCGGTCCCGGTGGATCC
ACCCTGAAAGCCTTGGAGCTGCTCACAAGCACCTACATCCTGGTCCAGGG
TAACACGGTCTCCGCCATGGGCCCCTACAAGGGTCTCAAGGAAGTCCGTC
GCATCATCAACGACTGCATGGCCAACATCCACCCGATCTACCACATTAAG
GAACTCATGATCAAGCGCGAATTGGCCAAGGACCCGACCCTGGCGAACGA
ATCCTGGGACCGCTTCCTGCCTAACTTCAAGAAGCGCACGCTGTCCAAGC
GTCGCGTGCCGTTCAAGGTCACCGACAAGACGAAGAAGGTGTACACTCCT
TTCCCGCCGGCGCCGGAGAAGAGCAAGGTGGATCTCCAGATCGAGTCGGG
CGAGTACTTCCTGTCCAAGGAGGCGAAGGATCGGCAGCAGAAGGAGGAGG
TCATGGAGAGACAGCGGTTGAAGCGCGAAGAGAAGATGAAGGAGCGCGAG
AAGGCGTTCGTGCCGCCCGAGGAGCTGGACGCAGAGGAGAAGAAGAAGGA
AAAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGAAGCGGAAGCGCGATT
CCGAGGCCGCGGATGTAGATGGCGACGATGGTGCCGAGAAGAAGGAAAAG
AAGAAGAAGAAGAAGTCCAAGTCGAAAGAGGATGCGTCGGATGGAGAGGC
GTGAATGCCTTCCACCTACAAGAGGGACAAGCCGTGGGACACGGATGACA
TTGACAAGTGGAAGGTCGAACCCTTCCAAGCCGAAGACAATGTCGCCGGT
AGTTTCGCTGAAGAATCTTCCTTCGCCACTCTTTTCCCCAAGTACCGTGA
AGTCTACCTGAAGGAAGCATGGCCCGTGGTGACAAGAGCGCTCGAGAAAT
TCGGTATTGCCTGCACGCTGGATTTGGTCGAGGGTAGCATGACAGTCAAG
ACGACCCGAAAGACGTTTGATCCTGCTGCGATTCTCAAGGCCCGTGACTT
GATCAAGCTGTTGTCGAGAAGTGTGCCGGTGCAACAGGCCCTCAAAATCC
TCGAAGACGACGTCGCATGCGACATCATCAAGATCCGCAACCAAGTCCGC
AACAAGGAGCGCTTCGTTAAGCGTCGTCAACGCATTCTCGGTCCCGGTGG
ATCCACCCTGAAAGCCTTGGAGCTGCTCACAAGCACCTACATCCTGGTCC
AGGGTAACACGGTCTCCGCCATGGGCCCCTACAAGGGTCTCAAGGAAGTC
CGTCGCATCATCAACGACTGCATGGCCAACATCCACCCGATCTACCACAT
TAAGGAACTCATGATCAAGCGCGAATTGGCCAAGGACCCGACCCTGGCGA
ACGAATCCTGGGACCGCTTCCTGCCTAACTTCAAGAAGCGCACGCTGTCC
AAGCGTCGCGTGCCGTTCAAGGTCACCGACAAGACGAAGAAGGTGTACAC
TCCTTTCCCGCCGGCGCCGGAGAAGAGCAAGGTGGATCTCCAGATCGAGT
CGGGCGAGTACTTCCTGTCCAAGGAGGCGAAGGATCGGCAGCAGAAGGAG
GAGGTCATGGAGAGACAGCGGTTGAAGCGCGAAGAGAAGATGAAGGAGCG
CGAGAAGGCGTTCGTGCCGCCCGAGGAGCTGGACGCAGAGGAGAAGAAGA
AGGAAAAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGAAGCGGAAGCGC
GATTCCGAGGCCGCGGATGTAGATGGCGACGATGGTGCCGAGAAGAAGGA
AAAGAAGAAGAAGAAGAAGTCCAAGTCGAAAGAGGATGCGTCGGATGGAG
AGGCGTGAATGCCTTCCACCTACAAGAGGGACAAGCCGTGGGACACGGAT
GACATTGACAAGTGGAAGGTCGAACCCTTCCAAGCCGAAGACAATGTCGC
CGGTAGTTTCGCTGAAGAATCTTCCTTCGCCACTCTTTTCCCCAAGTACC
GTGAAGTCTACCTGAAGGAAGCATGGCCCGTGGTGACAAGAGCGCTCGAG
AAATTCGGTATTGCCTGCACGCTGGATTTGGTCGAGGGTAGCATGACAGT
CAAGACGACCCGAAAGACGTTTGATCCTGCTGCGATTCTCAAGGCCCGTG
ACTTGATCAAGCTGTTGTCGAGAAGTGTGCCGGTGCAACAGGCCCTCAAA
ATCCTCGAAGACGACGTCGCATGCGACATCATCAAGATCCGCAACCAAGT
CCGCAACAAGGAGCGCTTCGTTAAGCGTCGTCAACGCATTCTCGGTCCCG
GTGGATCCACCCTGAAAGCCTTGGAGCTGCTCACAAGCACCTACATCCTG
GTCCAGGGTAACACGGTCTCCGCCATGGGCCCCTACAAGGGTCTCAAGGA
AGTCCGTCGCATCATCAACGACTGCATGGCCAACATCCACCCGATCTACC
ACATTAAGGAACTCATGATCAAGCGCGAATTGGCCAAGGACCCGACCCTG
GCGAACGAATCCTGGGACCGCTTCCTGCCTAACTTCAAGAAGCGCACGCT
GTCCAAGCGTCGCGTGCCGTTCAAGGTCACCGACAAGACGAAGAAGGTGT
ACACTCCTTTCCCGCCGGCGCCGGAGAAGAGCAAGGTGGATCTCCAGATC
GAGTCGGGCGAGTACTTCCTGTCCAAGGAGGCGAAGGATCGGCAGCAGAA
GGAGGAGGTCATGGAGAGACAGCGGTTGAAGCGCGAAGAGAAGATGAAGG
AGCGCGAGAAGGCGTTCGTGCCGCCCGAGGAGCTGGACGCAGAGGAGAAG
AAGAAGGAAAAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGAAGCGGAA
GCGCGATTCCGAGGCCGCGGATGTAGATGGCGACGATGGTGCCGAGAAGA
AGGAAAAGAAGAAGAAGAAGAAGTCCAAGTCGAAAGAGGATGCGTCGGAT
GGAGAGGCGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KRR1KJC3_006343Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006343-T1KJC3_006343-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006343-T1.utr5p1KJC3_006343-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006343-T1.exon1KJC3_006343-T1.exon1Aspergillus niger KJC3exon
KJC3_006343-T1.exon2KJC3_006343-T1.exon2Aspergillus niger KJC3exon
KJC3_006343-T1.exon3KJC3_006343-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006343-T1.cdsKJC3_006343-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006343-T1.utr3p1KJC3_006343-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263CG4
DBxrefInterPro:IPR041174
DBxrefInterPro:IPR024166
DBxrefInterPro:IPR036612
DBxrefInterPro:IPR004087
DBxrefPFAM:PF17903
Productribosomal RNA assembly protein krr1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5403428..5405029 +
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