You are here

Home

KJC3_006376-T1, KJC3_006376-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006376-T1
Unique NameKJC3_006376-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5508179..5510325-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006376-T1 ID=KJC3_006376-T1|Name=KJC3_006376-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2147bp|location=Sequence derived from alignment at ch4:5508179..5510325- (Aspergillus niger KJC3)
AGCTTTCCTTCCTTCATTCGGTCCGCAAAGTAACTCCGGGGCATGAAATA
CTCTCCTCCGGCTGCCCCGACACGTCCCTAACTCCTTTCCCCCGGCCAAT
CCACGCGCAAACGTGAGGGGCAATGGCCTTTCCCCTCCCGCGGGGCATCA
CGCCCCCGGAGATCTCCTTCCTCGCGGAGATGGAGATGGTCACCATCTTG
CCTCGTCAGCGACTCGAGGGGCTTGAATTACTGGGAGTACGTCCTATACA
CACATCTTCCGCTACTAATCACAGCTAACAACTCTTCCAATAGGGCCCCG
TCTCCCCCCTCCTCCCACCCCGACGCACCTCCCTCCCCCTCTGGCTTGCC
CTCCTCCTCAAACGCCAACGCCGTGCCAACATCCTCCCCCCGCCCTGGCT
CCACCCCGAATCTCTGGAGCTCATCCTCGAAATCGAGACCCAAAACGACG
AATACCAGCACGCCTTCTCTCCGCCACCTCCACTGCCCGGCCAGCCCGCC
CCGGGAGATCACCGTCGCGCTCCGCTCGCAACCCCGCGCTACACTCCCTC
CGGCGAGAAATACTACCCTGCGCCGCCGTTCCTGCCTCAGAATACAGCAC
GCGATCACATCCCGCCGGGCGAGCCACCGGCACTACCGTTCCATTGGTTG
GAGGTAGGGACGATGTTGCTGGAGGCGGCGAGCGATGATCTTGTGGATCC
GGATCAGACGAGACGGCTGTTGAAGGAGCTGAGGGAAGTGAGGATGGCGA
AGGTTAGGGCGGGTGTGGATGTCCTAGATGCGGCGGCTATGGGGGGTGGG
GGTGTTGCGTTGACGGGTGTGGGAGCTATGGAGTTGGGAGAGGGGAGGAG
GTTCATTGCGGGGGTGGTGGATGGACTGAGGTATGTCCTTGTCACTTCTT
CTATTCTTTTGTTTCACAATCGTTGTTGGAGGTGGGTTGCTAACGAGTCA
TGTCGATAGGCGCATCGGGGCGTCCAAGGAACAGGCGAGGAGAGAAGAGA
TGGCAGAGGAAATGGCGAATGGGGGGTATGATGGGACACAAGACGATGAT
GATGAAATGGAGTTTTAGATGCTTCTTCTTTTCTTGCTTTATATTTGCAA
TGCGTGGGTTGGTTCATTGTTCGTTGTTTGTTACATGATGGGAGTTATGG
GTGTCAAGTCTATATGTATGGGACATGGCAGGACATGATCATATTGGCAT
CGCACATACATCAGATACATGTATGTATATATACCCTATATCATTGGTTG
GAAGTTACTTGGTTGATGGGCCAGGTGTCGTGCTAGTAAGCAGGTAGTAG
ATAGGTAGTAAGTAGTCCCAATCATTCCCACTATCAAGAACACCAGATGC
ATGCGACGCTCAGCTTGAAATGAGAGAGAGAGGAGAGGGAAGATAATAGA
AAAGGACATGACAAGTCAATCTCCGAAAGACAGATGAAAACAACAAAAAT
GCCAGAAACAATGGATTGAATCTTACATCCCCAACGCCGACGACAAGAGG
TATATAACAACCCGAAGGAGATAGAAGAAGCATGCAAAAATGATCCAACT
GGATACAGAATGAAAGGCATAAATAAACACCCTTTTCGAGTAAGCCGTCA
GTCTACCTACCCCTATGACGCGCAATACCGGGGCCCCAGATAGTAGTTCT
AGGTTTTCCAGTCCCCAAAGCCCGGCGAGCTTCATTGAGCAGCCTGATCC
TTCTGCATCATCTTCCTCCGCGCCGCCAGAATCATCTCGTCCCTCCGCTT
CTGCAGCAAGCGCTGGCGCTCCTCCTTGCTCTGCGACCAGCCTGTCGTGG
AAGAAGCCTGCGACAGTGCGGACTCGGCGGCGCTGTTCTCGGCCTCAAGT
TTCGCGCGGAGATTATAGCGGGAGATCAGGTCCTGGGCATCGGCCTTGGA
GGTCGCCGTTTGAGTGGGTTGTGATTGAACAGGGGCCGTAGTGGGGATAG
CGATCTGAGGTTGGAAGGATGGGGGCGGCTACAAGGTAGTTTGGGTTAGC
TGGCTATGCATCTGACTCAATGCGGGGGAACGAGATAGGGGAAGAAAGAG
GAGCAGATGATGAATGACCAGCGACGCAGGTCAAGATGCATCCAAGAGAG
GAAGGAATAAGGGAATAAACTCACCACTTCCAGGCCCCGACCGGTCA
back to top

Coding sequence (CDS) from alignment at ch4:5508179..5510325-

>KJC3_006376-T1 ID=KJC3_006376-T1|Name=KJC3_006376-T1|organism=Aspergillus niger KJC3|type=CDS|length=2430bp|location=Sequence derived from alignment at ch4:5508179..5510325- (Aspergillus niger KJC3)
GCGCATCGGGGCGTCCAAGGAACAGGCGAGGAGAGAAGAGATGGCAGAGG
AAATGGCGAATGGGGGGTATGATGGGACACAAGACGATGATGATGAAATG
GAGTTTTAGGGCCCCGTCTCCCCCCTCCTCCCACCCCGACGCACCTCCCT
CCCCCTCTGGCTTGCCCTCCTCCTCAAACGCCAACGCCGTGCCAACATCC
TCCCCCCGCCCTGGCTCCACCCCGAATCTCTGGAGCTCATCCTCGAAATC
GAGACCCAAAACGACGAATACCAGCACGCCTTCTCTCCGCCACCTCCACT
GCCCGGCCAGCCCGCCCCGGGAGATCACCGTCGCGCTCCGCTCGCAACCC
CGCGCTACACTCCCTCCGGCGAGAAATACTACCCTGCGCCGCCGTTCCTG
CCTCAGAATACAGCACGCGATCACATCCCGCCGGGCGAGCCACCGGCACT
ACCGTTCCATTGGTTGGAGGTAGGGACGATGTTGCTGGAGGCGGCGAGCG
ATGATCTTGTGGATCCGGATCAGACGAGACGGCTGTTGAAGGAGCTGAGG
GAAGTGAGGATGGCGAAGGTTAGGGCGGGTGTGGATGTCCTAGATGCGGC
GGCTATGGGGGGTGGGGGTGTTGCGTTGACGGGTGTGGGAGCTATGGAGT
TGGGAGAGGGGAGGAGGTTCATTGCGGGGGTGGTGGATGGACTGAGATGG
CCTTTCCCCTCCCGCGGGGCATCACGCCCCCGGAGATCTCCTTCCTCGCG
GAGATGGAGATGGTCACCATCTTGCCTCGTCAGCGACTCGAGGGGCTTGA
ATTACTGGGAGCGCATCGGGGCGTCCAAGGAACAGGCGAGGAGAGAAGAG
ATGGCAGAGGAAATGGCGAATGGGGGGTATGATGGGACACAAGACGATGA
TGATGAAATGGAGTTTTAGGGCCCCGTCTCCCCCCTCCTCCCACCCCGAC
GCACCTCCCTCCCCCTCTGGCTTGCCCTCCTCCTCAAACGCCAACGCCGT
GCCAACATCCTCCCCCCGCCCTGGCTCCACCCCGAATCTCTGGAGCTCAT
CCTCGAAATCGAGACCCAAAACGACGAATACCAGCACGCCTTCTCTCCGC
CACCTCCACTGCCCGGCCAGCCCGCCCCGGGAGATCACCGTCGCGCTCCG
CTCGCAACCCCGCGCTACACTCCCTCCGGCGAGAAATACTACCCTGCGCC
GCCGTTCCTGCCTCAGAATACAGCACGCGATCACATCCCGCCGGGCGAGC
CACCGGCACTACCGTTCCATTGGTTGGAGGTAGGGACGATGTTGCTGGAG
GCGGCGAGCGATGATCTTGTGGATCCGGATCAGACGAGACGGCTGTTGAA
GGAGCTGAGGGAAGTGAGGATGGCGAAGGTTAGGGCGGGTGTGGATGTCC
TAGATGCGGCGGCTATGGGGGGTGGGGGTGTTGCGTTGACGGGTGTGGGA
GCTATGGAGTTGGGAGAGGGGAGGAGGTTCATTGCGGGGGTGGTGGATGG
ACTGAGATGGCCTTTCCCCTCCCGCGGGGCATCACGCCCCCGGAGATCTC
CTTCCTCGCGGAGATGGAGATGGTCACCATCTTGCCTCGTCAGCGACTCG
AGGGGCTTGAATTACTGGGAGCGCATCGGGGCGTCCAAGGAACAGGCGAG
GAGAGAAGAGATGGCAGAGGAAATGGCGAATGGGGGGTATGATGGGACAC
AAGACGATGATGATGAAATGGAGTTTTAGGGCCCCGTCTCCCCCCTCCTC
CCACCCCGACGCACCTCCCTCCCCCTCTGGCTTGCCCTCCTCCTCAAACG
CCAACGCCGTGCCAACATCCTCCCCCCGCCCTGGCTCCACCCCGAATCTC
TGGAGCTCATCCTCGAAATCGAGACCCAAAACGACGAATACCAGCACGCC
TTCTCTCCGCCACCTCCACTGCCCGGCCAGCCCGCCCCGGGAGATCACCG
TCGCGCTCCGCTCGCAACCCCGCGCTACACTCCCTCCGGCGAGAAATACT
ACCCTGCGCCGCCGTTCCTGCCTCAGAATACAGCACGCGATCACATCCCG
CCGGGCGAGCCACCGGCACTACCGTTCCATTGGTTGGAGGTAGGGACGAT
GTTGCTGGAGGCGGCGAGCGATGATCTTGTGGATCCGGATCAGACGAGAC
GGCTGTTGAAGGAGCTGAGGGAAGTGAGGATGGCGAAGGTTAGGGCGGGT
GTGGATGTCCTAGATGCGGCGGCTATGGGGGGTGGGGGTGTTGCGTTGAC
GGGTGTGGGAGCTATGGAGTTGGGAGAGGGGAGGAGGTTCATTGCGGGGG
TGGTGGATGGACTGAGATGGCCTTTCCCCTCCCGCGGGGCATCACGCCCC
CGGAGATCTCCTTCCTCGCGGAGATGGAGATGGTCACCATCTTGCCTCGT
CAGCGACTCGAGGGGCTTGAATTACTGGGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PSF2KJC3_006376Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006376-T1KJC3_006376-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006376-T1.cdsKJC3_006376-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006376-T1.utr3p1KJC3_006376-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006376-T1.exon3KJC3_006376-T1.exon3Aspergillus niger KJC3exon
KJC3_006376-T1.exon2KJC3_006376-T1.exon2Aspergillus niger KJC3exon
KJC3_006376-T1.exon1KJC3_006376-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006376-T1.utr5p1KJC3_006376-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264QRY
DBxrefInterPro:IPR036224
DBxrefInterPro:IPR021151
DBxrefInterPro:IPR007257
DBxrefPFAM:PF05916
ProductDNA replication protein psf2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5508179..5510325 -
Powered by Drupal