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KJC3_006387-T1, KJC3_006387-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006387-T1
Unique NameKJC3_006387-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5533454..5534918+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006387-T1 ID=KJC3_006387-T1|Name=KJC3_006387-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1465bp|location=Sequence derived from alignment at ch4:5533454..5534918+ (Aspergillus niger KJC3)
CTCCATGCCATTTAGTCAGCTCTTGATCGTGGCCTTGTCTCGTGTCAAGC
TGTGTTTTATTCAGTTCCGTTGAAAAGACCCTTCGTTGGCCTTTTAAATC
CCCTCGCATCCCCTTGGCTGGTGCTCTCTGTTTGGAAAGAGTCTTTTTCG
TGTCCGCCGCATCCTCTCCGCCACCACTCGACGCCCGACCCTCCCTCCGC
AATATCTCTCGCTAGCCGTCATTCTCTTGTCGAACTCCGCGCCCCCCTCT
GTCCCAGTGTTACTCAGCTCCTGTCGCTGTTAGGGTTATCAACATGGGAG
GCTCCTTGTCTCGTATGTGGTCCTTTCTCTGGACGAAGAAGGAGATTCGC
ATCCTCATCCTCGGTCTGGTAGGTATAATCATGCTTTGGCACTAGGCATC
AAGCTACTAGCGAGTTTCATACTAACCCGCGCTCCCATCTCTAGGATAAC
GCCGGAAAAACAACACTTCTTTACAGACTCAAGGTGCGTATAGCCTTGCA
GAGCTACTCTACTGTCAGCTAGAGGCCAGTGTTAATGTGCCAGGAATAGA
TTGGTGAAGTTGTTACCACGATACCAACCATTGGTTTCAACGTCGAATCG
GTGACGTATCGCAACTTGAATTTCAATGTCTGGGTAAGTCAACGCTACAA
TACCATTATAGTTGCCATTTGGTAGAGAAAAAGTATCTGAGGTTGCTGAC
TTTTCGCTGTCGTTCAGGATCTCGGAGGTCAAACGTCCATTCGACCTTAC
TGGCGCTGCTACTATGCGAACACCGCTGCTGTCATATTCGTCATTGATTC
CACAGATATTGAGCGACTCGGCACGGCTGCTGACGAACTAGCGGCTATGC
TGAATGAGGAGGAACTTCGTGATGCGGCGCTGTTGGTATTTGCCAACAAG
CAGGACCAGCCTGGCGCCAAAGGTGCCGGCGAAATATCAGAGGCTCTCAA
GCTGGGAGAGCTAAGGGATAGAAACTGGAGCATCGTCGCATGCTCTGCTA
TCGACGGCAAAGGTCTTAACGAAGGCATGGATTGGCTGGTGGTATGTGCA
TCTTCAAGCTCCTTTCCTTCACTTTGGATAAGTACTGACCTTTTATACAC
AGCAAACTCTTCAGTCTGAAAACGCATGAGCGACGGTGTTATTGTACCAT
CTTATAGATTTCTTTTGATATATGTTCGCCGCTTTCAGGTGGTAGGGATT
AGCTGCTTCCTGATGCTTCCTCATTCCTCCTTGGTGTCGTTCACTTATCC
TCACTTTTACATCCTCTTTTCTCTCGCAACTCCGTTCAGGGCTCATGTCG
TTTATACAGTATACCTCTTTGATATCGAAACATCCATACATAGTATAATA
TCATAATTATTTGGAATGACTACATTGCGGTCTACAGCAATGATTTGCGC
CGCTTCTTATGCCATGTTCAGGTTCAAGACAGGGATCGTCCAGCCTTGGT
GTAGAAATGTCAAGA
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Coding sequence (CDS) from alignment at ch4:5533454..5534918+

>KJC3_006387-T1 ID=KJC3_006387-T1|Name=KJC3_006387-T1|organism=Aspergillus niger KJC3|type=CDS|length=2745bp|location=Sequence derived from alignment at ch4:5533454..5534918+ (Aspergillus niger KJC3)
ATGGGAGGCTCCTTGTCTCGTATGTGGTCCTTTCTCTGGACGAAGAAGGA
GATTCGCATCCTCATCCTCGGTCTGGATAACGCCGGAAAAACAACACTTC
TTTACAGACTCAAGATTGGTGAAGTTGTTACCACGATACCAACCATTGGT
TTCAACGTCGAATCGGTGACGTATCGCAACTTGAATTTCAATGTCTGGGA
TCTCGGAGGTCAAACGTCCATTCGACCTTACTGGCGCTGCTACTATGCGA
ACACCGCTGCTGTCATATTCGTCATTGATTCCACAGATATTGAGCGACTC
GGCACGGCTGCTGACGAACTAGCGGCTATGCTGAATGAGGAGGAACTTCG
TGATGCGGCGCTGTTGGTATTTGCCAACAAGCAGGACCAGCCTGGCGCCA
AAGGTGCCGGCGAAATATCAGAGGCTCTCAAGCTGGGAGAGCTAAGGGAT
AGAAACTGGAGCATCGTCGCATGCTCTGCTATCGACGGCAAAGGTCTTAA
CGAAGGCATGGATTGGCTGGTGCAAACTCTTCAGTCTGAAAACGCATGAA
TGGGAGGCTCCTTGTCTCGTATGTGGTCCTTTCTCTGGACGAAGAAGGAG
ATTCGCATCCTCATCCTCGGTCTGGATAACGCCGGAAAAACAACACTTCT
TTACAGACTCAAGATTGGTGAAGTTGTTACCACGATACCAACCATTGGTT
TCAACGTCGAATCGGTGACGTATCGCAACTTGAATTTCAATGTCTGGGAT
CTCGGAGGTCAAACGTCCATTCGACCTTACTGGCGCTGCTACTATGCGAA
CACCGCTGCTGTCATATTCGTCATTGATTCCACAGATATTGAGCGACTCG
GCACGGCTGCTGACGAACTAGCGGCTATGCTGAATGAGGAGGAACTTCGT
GATGCGGCGCTGTTGGTATTTGCCAACAAGCAGGACCAGCCTGGCGCCAA
AGGTGCCGGCGAAATATCAGAGGCTCTCAAGCTGGGAGAGCTAAGGGATA
GAAACTGGAGCATCGTCGCATGCTCTGCTATCGACGGCAAAGGTCTTAAC
GAAGGCATGGATTGGCTGGTGCAAACTCTTCAGTCTGAAAACGCATGAAT
GGGAGGCTCCTTGTCTCGTATGTGGTCCTTTCTCTGGACGAAGAAGGAGA
TTCGCATCCTCATCCTCGGTCTGGATAACGCCGGAAAAACAACACTTCTT
TACAGACTCAAGATTGGTGAAGTTGTTACCACGATACCAACCATTGGTTT
CAACGTCGAATCGGTGACGTATCGCAACTTGAATTTCAATGTCTGGGATC
TCGGAGGTCAAACGTCCATTCGACCTTACTGGCGCTGCTACTATGCGAAC
ACCGCTGCTGTCATATTCGTCATTGATTCCACAGATATTGAGCGACTCGG
CACGGCTGCTGACGAACTAGCGGCTATGCTGAATGAGGAGGAACTTCGTG
ATGCGGCGCTGTTGGTATTTGCCAACAAGCAGGACCAGCCTGGCGCCAAA
GGTGCCGGCGAAATATCAGAGGCTCTCAAGCTGGGAGAGCTAAGGGATAG
AAACTGGAGCATCGTCGCATGCTCTGCTATCGACGGCAAAGGTCTTAACG
AAGGCATGGATTGGCTGGTGCAAACTCTTCAGTCTGAAAACGCATGAATG
GGAGGCTCCTTGTCTCGTATGTGGTCCTTTCTCTGGACGAAGAAGGAGAT
TCGCATCCTCATCCTCGGTCTGGATAACGCCGGAAAAACAACACTTCTTT
ACAGACTCAAGATTGGTGAAGTTGTTACCACGATACCAACCATTGGTTTC
AACGTCGAATCGGTGACGTATCGCAACTTGAATTTCAATGTCTGGGATCT
CGGAGGTCAAACGTCCATTCGACCTTACTGGCGCTGCTACTATGCGAACA
CCGCTGCTGTCATATTCGTCATTGATTCCACAGATATTGAGCGACTCGGC
ACGGCTGCTGACGAACTAGCGGCTATGCTGAATGAGGAGGAACTTCGTGA
TGCGGCGCTGTTGGTATTTGCCAACAAGCAGGACCAGCCTGGCGCCAAAG
GTGCCGGCGAAATATCAGAGGCTCTCAAGCTGGGAGAGCTAAGGGATAGA
AACTGGAGCATCGTCGCATGCTCTGCTATCGACGGCAAAGGTCTTAACGA
AGGCATGGATTGGCTGGTGCAAACTCTTCAGTCTGAAAACGCATGAATGG
GAGGCTCCTTGTCTCGTATGTGGTCCTTTCTCTGGACGAAGAAGGAGATT
CGCATCCTCATCCTCGGTCTGGATAACGCCGGAAAAACAACACTTCTTTA
CAGACTCAAGATTGGTGAAGTTGTTACCACGATACCAACCATTGGTTTCA
ACGTCGAATCGGTGACGTATCGCAACTTGAATTTCAATGTCTGGGATCTC
GGAGGTCAAACGTCCATTCGACCTTACTGGCGCTGCTACTATGCGAACAC
CGCTGCTGTCATATTCGTCATTGATTCCACAGATATTGAGCGACTCGGCA
CGGCTGCTGACGAACTAGCGGCTATGCTGAATGAGGAGGAACTTCGTGAT
GCGGCGCTGTTGGTATTTGCCAACAAGCAGGACCAGCCTGGCGCCAAAGG
TGCCGGCGAAATATCAGAGGCTCTCAAGCTGGGAGAGCTAAGGGATAGAA
ACTGGAGCATCGTCGCATGCTCTGCTATCGACGGCAAAGGTCTTAACGAA
GGCATGGATTGGCTGGTGCAAACTCTTCAGTCTGAAAACGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ARL1KJC3_006387Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006387-T1KJC3_006387-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006387-T1.utr5p1KJC3_006387-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006387-T1.exon1KJC3_006387-T1.exon1Aspergillus niger KJC3exon
KJC3_006387-T1.exon2KJC3_006387-T1.exon2Aspergillus niger KJC3exon
KJC3_006387-T1.exon3KJC3_006387-T1.exon3Aspergillus niger KJC3exon
KJC3_006387-T1.exon4KJC3_006387-T1.exon4Aspergillus niger KJC3exon
KJC3_006387-T1.exon5KJC3_006387-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006387-T1.cdsKJC3_006387-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006387-T1.utr3p1KJC3_006387-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR005225
DBxrefInterPro:IPR006689
DBxrefPFAM:PF09439
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF01926
DBxrefPFAM:PF00025
ProductArf GTPase arl1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5533454..5534918 +
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