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KJC3_006402-T1, KJC3_006402-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006402-T1
Unique NameKJC3_006402-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5571850..5573474-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006402-T1 ID=KJC3_006402-T1|Name=KJC3_006402-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1625bp|location=Sequence derived from alignment at ch4:5571850..5573474- (Aspergillus niger KJC3)
TTTCGATCGATGATCGTCAGTGATACAGAGTACTGATAGAGTACTAGTGG
ATGCCGTTCCTATAAACAAGACAGTGAATACGCTCAAACTACTCGTCCCC
ATCACCTTTCATGTGGTGATCCCTGCTGTCAAGGCCCACGGGACCTTCCC
CCGTACCTCAATAGTCGTCCTCTTCTGGAATAGGCCGTCGGCATTTTAAT
CATCCGTGCCTCTATGGCATCTGTTCCTGCAGCGTCTGTCTTTTCTTTGC
CCCTAGCCCCATGGCAACAACCTTCTAGTGTGCGCGTGGCTCAGTACGAG
CCTAGGAAGCGCAAGAAGGATCTCAACGACTGGGGGGACGATGATGACGA
TGTTGATGGCGACACAACAGATGCGGCATCAGAGGCAGCTGCTTCTGGTC
CGTCCCTCATCCTCTCCCCGGATGATGCCCACCAATATCGCATTGCTGGC
CTTTCCTTTGACCAAGAACTGCCCGGGGGCAATTTCCCACATGCCCCGGT
TAAAGATCAACCGACCCGTCGGCAGACACGAAATCAGGTCCTGAAAGAAT
TGACGTCATTGTCGTCTCCCATTTATCCTCCCCAGTCTGCAGCTCATCAA
GGGAATCTTCGTCTTCAGCATCTGGCTGTGCTATCCTCCATCTTGCACCG
TTGCCTACTTCAGAAAGACTTCGGTCGAGCGGGCAGGGCCTGGGGGTTAA
TCCTCCGTGAAGAAGTTGGGGGCACCCCAATCGACGTTCGCACTGAAGGG
AGATGGGGCATTGGCGCAGAAATCCTGCTCCGACGTGACTGTCAGGTCTC
GGACATGACTCCTGATAATGCGCAGGAAAGTGAGGCAGAGCCGTCTGAGG
CACCGTTTTCCAAATTATTATTCACAAGGCAGGGGTTTGAAAAGGCCAAA
CAGTATTACGAGACGCTCATCATTCAGCATCCATACCGAAAAGCTGCACC
TGACGCTATAAGCTCTCTACACTTCTATCCTGCCATGTTTGGACTATGGG
TGTATGTCACCCAAGAGGAGAGCAACGTTTCTCGACAAAAATTATGGGAC
GCCCATGGTGCTTCCCCTGATGACTCGGAAGAAGAAGATTCTGCGCCCGA
TATGCAACACCATTCTAGCTCACGACAGAATACGCATGCGATGGTTGCCA
GTGTTAGGAAGAGTGAACTGGAACAGGCCCAGAAGATCGCAGCTAGGATG
GATGAGATTCTCGGATCCCCTCCGTACTCCGACTCCCCGGAGTTGCTGGA
GCTCCGCGGAATGATATCTCTCTGGATCGCTGATCTCTTCGTCTCATCAC
TGCCATATGCGCGGACAGAGGGAGATCTGGATGGTTACGATTCGGATGAG
ACCGGTTCGTCATCCGCGGAAGATCTCCAAGACTCACTTCAAGAGCGGCG
AGAACGCCGTCTTGCAGTTGAGAGGAAGGAATATGAGGTCCAAAAATCGC
AGGATTACTTTGAAAAAGCCAAACATCGTGGCAAGGGAGTCACCTCTACG
TTTGGAGACCTGCATATAGATGATGATGCTTCATTTGGGTATGCGGATTA
ACGTGACATGATCATGCGAAGATGTATGCATTTATTGTACCAGCACGATG
ATAACACAAGAATAAACATGAAACC
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Coding sequence (CDS) from alignment at ch4:5571850..5573474-

>KJC3_006402-T1 ID=KJC3_006402-T1|Name=KJC3_006402-T1|organism=Aspergillus niger KJC3|type=CDS|length=1338bp|location=Sequence derived from alignment at ch4:5571850..5573474- (Aspergillus niger KJC3)
ATGGCATCTGTTCCTGCAGCGTCTGTCTTTTCTTTGCCCCTAGCCCCATG
GCAACAACCTTCTAGTGTGCGCGTGGCTCAGTACGAGCCTAGGAAGCGCA
AGAAGGATCTCAACGACTGGGGGGACGATGATGACGATGTTGATGGCGAC
ACAACAGATGCGGCATCAGAGGCAGCTGCTTCTGGTCCGTCCCTCATCCT
CTCCCCGGATGATGCCCACCAATATCGCATTGCTGGCCTTTCCTTTGACC
AAGAACTGCCCGGGGGCAATTTCCCACATGCCCCGGTTAAAGATCAACCG
ACCCGTCGGCAGACACGAAATCAGGTCCTGAAAGAATTGACGTCATTGTC
GTCTCCCATTTATCCTCCCCAGTCTGCAGCTCATCAAGGGAATCTTCGTC
TTCAGCATCTGGCTGTGCTATCCTCCATCTTGCACCGTTGCCTACTTCAG
AAAGACTTCGGTCGAGCGGGCAGGGCCTGGGGGTTAATCCTCCGTGAAGA
AGTTGGGGGCACCCCAATCGACGTTCGCACTGAAGGGAGATGGGGCATTG
GCGCAGAAATCCTGCTCCGACGTGACTGTCAGGTCTCGGACATGACTCCT
GATAATGCGCAGGAAAGTGAGGCAGAGCCGTCTGAGGCACCGTTTTCCAA
ATTATTATTCACAAGGCAGGGGTTTGAAAAGGCCAAACAGTATTACGAGA
CGCTCATCATTCAGCATCCATACCGAAAAGCTGCACCTGACGCTATAAGC
TCTCTACACTTCTATCCTGCCATGTTTGGACTATGGGTGTATGTCACCCA
AGAGGAGAGCAACGTTTCTCGACAAAAATTATGGGACGCCCATGGTGCTT
CCCCTGATGACTCGGAAGAAGAAGATTCTGCGCCCGATATGCAACACCAT
TCTAGCTCACGACAGAATACGCATGCGATGGTTGCCAGTGTTAGGAAGAG
TGAACTGGAACAGGCCCAGAAGATCGCAGCTAGGATGGATGAGATTCTCG
GATCCCCTCCGTACTCCGACTCCCCGGAGTTGCTGGAGCTCCGCGGAATG
ATATCTCTCTGGATCGCTGATCTCTTCGTCTCATCACTGCCATATGCGCG
GACAGAGGGAGATCTGGATGGTTACGATTCGGATGAGACCGGTTCGTCAT
CCGCGGAAGATCTCCAAGACTCACTTCAAGAGCGGCGAGAACGCCGTCTT
GCAGTTGAGAGGAAGGAATATGAGGTCCAAAAATCGCAGGATTACTTTGA
AAAAGCCAAACATCGTGGCAAGGGAGTCACCTCTACGTTTGGAGACCTGC
ATATAGATGATGATGCTTCATTTGGGTATGCGGATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006361transcription initiation from RNA polymerase I promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001181RNA polymerase I general transcription initiation factor activity
GO:0001164RNA polymerase I core promoter sequence-specific DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006402KJC3_006402Aspergillus niger KJC3gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006402-T1.cdsKJC3_006402-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006402-T1.utr3p1KJC3_006402-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006402-T1.exon1KJC3_006402-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006402-T1.utr5p1KJC3_006402-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006402-T1KJC3_006402-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR007224
DBxrefPFAM:PF04090
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5571850..5573474 -
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