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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5583803..5587353+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006406-T1 ID=KJC3_006406-T1|Name=KJC3_006406-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3551bp|location=Sequence derived from alignment at ch4:5583803..5587353+ (Aspergillus niger KJC3)
CTTGACTCCAAACTAGGCGGGCTTGATTAATGCCGGACAGACGAATGGGA
CAAAATTAAGGTGAGAACCACCATGTTCTAGCGCTGGCGGGTCATCCAGA
TAATAGAGGAGCAACGAGACTAAGGGGAAGGATGGGAAGTTAAAGTTGTG
GTGCCCTTGATTGATTGCTTGGATTGCTTTTTGGATGCATTGCCTCTTCC
GGTCAGCCCCATCCCCAATCATCTCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTTCCCACTCCACTCTTCTCTTTTACATCCTATTTCTCTCTCATTTTG
AGCTTCCTTCTTCTACTCTTTTCCCATTTCTCCCTTCTTGTTTATTTACT
ACTGTTCTGCCACCTTGTTGGTGGCTTTTAATCTCCTCTACTCTTCCTCT
ACCTTTCCCTCCCCTCCCTTCCGTTCGTTCTCTTTGTTTCCTGTAATTAC
CCGGAGTCCAACTTGTTTGCTACCAAGTGTTCCATTTTCACCAGCATATC
TCTGAGTCAACATCCTCCTCCTGTTAATTCTCTCCTCCATCAGCTCTCTT
TCAGTGCGTGCTGGCTATGCGGATTGGGCCTCCCCGCCATCGGTGCCCAT
CCATCCGGTGCTGAACGACTGCAGTCGATGCCGGCCATCTCGACCCTCTT
CCGCTTGGGTTCTTCGATGCGAATCACACCATGGCACCTCCATACTCCAG
TTCCCAGGCCGCCTTGACCGGCTATACTCCCTCATTCCTGTCGCTACAGG
ACCAGAACGCTCCTCTCTCCGCCTACTCCATCCTAGGATCCGGTCAATAT
CCCGATAGTGTCGCATACTGGCACAATCCATCCGCGCAACCCCAGCCGCC
GCTACCTCCCGCCGCCGTCGCCGCCTCCTATCCGTCCGTGCCCCCGAAGG
CCCAGTCGCTCCTCCAGCCCACCTCCGATCAGAAGAAGCATAAGCGTACT
CGCAGTGGCTGTTTCACCTGTCGATCCCGTCGCATCAAGTGCGACGAAGC
ACGTCCCGTCTGCGACAGATGTCGGAAGGGCAACCGCGACTGCGTCTATC
CGTCAGCCACAGGTGCATCCAAGTCAGGAACCCGTAGCGTGTCCAAGCCC
AGAGGATCACTGTTGCGTGGAAATGAGTCTTCCGCTCACCCGGGATCCGA
GGACTTCCGCGTCTTGGAGCCCATCGCCGACGAGGATGAGGATGGAACTA
GTGTCGGGTCAAGTACCCGACTGTCCCCAACAGCCGCACCCACATGGTCT
AAACCCAACCTCCCCAGACGACAAAGTGGTCAGTCTTTGAAGCAGCAGGG
TGGGAGGCATGTTGTTGCGACCGACTTGGGTGGTGCACGGATTGAGAATA
GTAACTCGCCGTCCCCGTCCTCGGATACGTCATCTAGATACGACTCGCTA
AGCGCTCGGTCGGCCAGTGTCGGTGTCACCCTGCCCGAACCATATGGATC
CACTCTGCCCAGTATAGCACATCTGCCGGACGACCTGCGATTTTATCTCA
ACTACCACCAAGAATTCATCACGTACCGTCATTATTTCTTAAAACCGGTC
AATGACCGGTTTGTCCATCAAAGTATCATTGAGCTGGCGTTGCAGTATGA
TCCCCTGCTGTATGCCGTGGTGGGCTTTTCTGCATATCATCATTGTGTTC
AAAACAACAGTGGGAAACTATACACCTTTTTGAAATATTACAACTTCGCG
TTGAAGCTCCTGCGCAAGTCCTTGGGCTCGGGTGAGCCGCATAATGAGGC
GACTCTGATCACGGTGCTTGTCCTCACCACATTCGAGGTAAGACATTCAG
CCAGTTTTTATGCTTCTTGCAAATGAACCCTACTGACTCGCCAGGAATCC
GTCGGGGACTGGGTCAACCTCATTGGCCACCATCAGGCTGCTCACGCCTT
GGTGCGGGAGATCCTAACGCCGGAGTCTGCCAACCTGAACGAGCTACATG
GCAACATCTTCGTTTGGTACGCCCGATTCGACGTGGTAGCAGGGATTTTG
GCCGGAAATGAGACGATCCTAAGTCGTGATTGGTATGTTGCAAAAGAGGA
GTATGATGCTCAGGAAGCCGCCCGCCATCCAAACGATGCAACGAAGCAAC
TGGCGCTGGCGAATTCGATCAACCGCCGGTTTGGCCTGGAAATGGCGTCA
TTATATGCGAAGTTGTCGCGCGGTTTGATTCCAGTTAATGAGTTCATTAT
CCAGAACGAGTTGTTGGGGCAGACCTTGGAAAGGGTACGAACCATCCTAG
AATCGTTCAACGACTCTGATTACACCGTGCGGGAGTATCCTAATCAGGTT
CCCTTGACCCCGGACGACGTCGTGGATCCGTATGTTCCCGGGGGAATGCA
CCACGGGCCCCTGTGGGAAGTCAACATGACGTGGGTTGACTATTACTCCA
CCAAGGCCATGTACAAGTATCAGTCACTTCTTTCGGTCAGGCAATCATCG
GTGGAAGAGTTACAATCCCTCTCGGTGGAGCTGGTCCGGCTAATGGAGGC
GGTTGATCGATGGCCCATGAAGGAAAGCGGATGCATCCTGGCGTTCAAGA
ACAGCATCGGAATGGCCGCCATGTTCTGTCCTCGCGATGAACGGTACATT
ATGTGGGCGCGGAGGAAGTTCGCTCAGCTGGAGCAAAGCGGGTGAGTGTT
GCAAGTCAGGGAGATGTTGGAAGTCAGCTAATTGTAGTCGATCAGATACG
TTATTGCGGCCACTTTCCGGGCGGCACTGGCAGCCTCGTGGCAGAAGCCC
GAAGTCAATCGCTGGTGGTTGCCAGACGACGAAGGATACCCGAGCATCAT
CCGTGAGGTGCGAGCGATGACGGAAGAACGCACGAGCCACCCTCGAGATA
ACTTCGGCGAGGATGTCAGCCATATGAAGACGCTATTTTGGAACATCAGC
TTGGACGACACCTCCAGCGAGGGGAGTCCCGCGTCGGTGAACACAGAAGG
CCGACCATGACAGCCTGCTGTACAACTGCAGCTGGTTGCACAACAGATGC
AACATTCTTCATCTGTGCATAACGAACCGAGTATATACATACAATCACAC
CCAACCAAGTACAGCCCTGGATATTCCAGTAATGAATCCAACGATGATCC
ATACCCTCCTCCACCACCCGGTCACGCATGGTCGCCGCTACGCCTTAATG
AATAATCTCTGGTTATCTGATGACCCAACCCACATTCGTTTGCTCTCTCA
CGGTGACATGCGTGACCGGAACGAATTTTGATACCCGGATACCAAACGAG
GATTTACCTGGAGTAAGGAGATTGGATGGAAGATCTGTCTGCTTATTCAC
GTACCTACATACATACATACCCATTGGATCATACCCATGCGCTAGATACC
CAATATACGGTCTACACACAAATATTATACAGAACAATGAACCCATCCAC
TATACGTATCCACTTTAAGAACCAACCCCAGAACCATCCCGATCTCTATC
TAGATAATCCAACCCTCCCCGGCACCTCAACAGCAGGCACCACCGTCTCC
AAACCCCCCCTCAACTCCCCAACACCATCTCCAACTCCCACCCCCATCTC
C back to topCoding sequence (CDS) from alignment at ch4:5583803..5587353+ >KJC3_006406-T1 ID=KJC3_006406-T1|Name=KJC3_006406-T1|organism=Aspergillus niger KJC3|type=CDS|length=6507bp|location=Sequence derived from alignment at ch4:5583803..5587353+ (Aspergillus niger KJC3)
ATGGCACCTCCATACTCCAGTTCCCAGGCCGCCTTGACCGGCTATACTCC
CTCATTCCTGTCGCTACAGGACCAGAACGCTCCTCTCTCCGCCTACTCCA
TCCTAGGATCCGGTCAATATCCCGATAGTGTCGCATACTGGCACAATCCA
TCCGCGCAACCCCAGCCGCCGCTACCTCCCGCCGCCGTCGCCGCCTCCTA
TCCGTCCGTGCCCCCGAAGGCCCAGTCGCTCCTCCAGCCCACCTCCGATC
AGAAGAAGCATAAGCGTACTCGCAGTGGCTGTTTCACCTGTCGATCCCGT
CGCATCAAGTGCGACGAAGCACGTCCCGTCTGCGACAGATGTCGGAAGGG
CAACCGCGACTGCGTCTATCCGTCAGCCACAGGTGCATCCAAGTCAGGAA
CCCGTAGCGTGTCCAAGCCCAGAGGATCACTGTTGCGTGGAAATGAGTCT
TCCGCTCACCCGGGATCCGAGGACTTCCGCGTCTTGGAGCCCATCGCCGA
CGAGGATGAGGATGGAACTAGTGTCGGGTCAAGTACCCGACTGTCCCCAA
CAGCCGCACCCACATGGTCTAAACCCAACCTCCCCAGACGACAAAGTGGT
CAGTCTTTGAAGCAGCAGGGTGGGAGGCATGTTGTTGCGACCGACTTGGG
TGGTGCACGGATTGAGAATAGTAACTCGCCGTCCCCGTCCTCGGATACGT
CATCTAGATACGACTCGCTAAGCGCTCGGTCGGCCAGTGTCGGTGTCACC
CTGCCCGAACCATATGGATCCACTCTGCCCAGTATAGCACATCTGCCGGA
CGACCTGCGATTTTATCTCAACTACCACCAAGAATTCATCACGTACCGTC
ATTATTTCTTAAAACCGGTCAATGACCGGTTTGTCCATCAAAGTATCATT
GAGCTGGCGTTGCAGTATGATCCCCTGCTGTATGCCGTGGTGGGCTTTTC
TGCATATCATCATTGTGTTCAAAACAACAGTGGGAAACTATACACCTTTT
TGAAATATTACAACTTCGCGTTGAAGCTCCTGCGCAAGTCCTTGGGCTCG
GGTGAGCCGCATAATGAGGCGACTCTGATCACGGTGCTTGTCCTCACCAC
ATTCGAGGAATCCGTCGGGGACTGGGTCAACCTCATTGGCCACCATCAGG
CTGCTCACGCCTTGGTGCGGGAGATCCTAACGCCGGAGTCTGCCAACCTG
AACGAGCTACATGGCAACATCTTCGTTTGGTACGCCCGATTCGACGTGGT
AGCAGGGATTTTGGCCGGAAATGAGACGATCCTAAGTCGTGATTGGTATG
TTGCAAAAGAGGAGTATGATGCTCAGGAAGCCGCCCGCCATCCAAACGAT
GCAACGAAGCAACTGGCGCTGGCGAATTCGATCAACCGCCGGTTTGGCCT
GGAAATGGCGTCATTATATGCGAAGTTGTCGCGCGGTTTGATTCCAGTTA
ATGAGTTCATTATCCAGAACGAGTTGTTGGGGCAGACCTTGGAAAGGGTA
CGAACCATCCTAGAATCGTTCAACGACTCTGATTACACCGTGCGGGAGTA
TCCTAATCAGGTTCCCTTGACCCCGGACGACGTCGTGGATCCGTATGTTC
CCGGGGGAATGCACCACGGGCCCCTGTGGGAAGTCAACATGACGTGGGTT
GACTATTACTCCACCAAGGCCATGTACAAGTATCAGTCACTTCTTTCGGT
CAGGCAATCATCGGTGGAAGAGTTACAATCCCTCTCGGTGGAGCTGGTCC
GGCTAATGGAGGCGGTTGATCGATGGCCCATGAAGGAAAGCGGATGCATC
CTGGCGTTCAAGAACAGCATCGGAATGGCCGCCATGTTCTGTCCTCGCGA
TGAACGGTACATTATGTGGGCGCGGAGGAAGTTCGCTCAGCTGGAGCAAA
GCGGATACGTTATTGCGGCCACTTTCCGGGCGGCACTGGCAGCCTCGTGG
CAGAAGCCCGAAGTCAATCGCTGGTGGTTGCCAGACGACGAAGGATACCC
GAGCATCATCCGTGAGGTGCGAGCGATGACGGAAGAACGCACGAGCCACC
CTCGAGATAACTTCGGCGAGGATGTCAGCCATATGAAGACGCTATTTTGG
AACATCAGCTTGGACGACACCTCCAGCGAGGGGAGTCCCGCGTCGGTGAA
CACAGAAGGCCGACCATGAATGGCACCTCCATACTCCAGTTCCCAGGCCG
CCTTGACCGGCTATACTCCCTCATTCCTGTCGCTACAGGACCAGAACGCT
CCTCTCTCCGCCTACTCCATCCTAGGATCCGGTCAATATCCCGATAGTGT
CGCATACTGGCACAATCCATCCGCGCAACCCCAGCCGCCGCTACCTCCCG
CCGCCGTCGCCGCCTCCTATCCGTCCGTGCCCCCGAAGGCCCAGTCGCTC
CTCCAGCCCACCTCCGATCAGAAGAAGCATAAGCGTACTCGCAGTGGCTG
TTTCACCTGTCGATCCCGTCGCATCAAGTGCGACGAAGCACGTCCCGTCT
GCGACAGATGTCGGAAGGGCAACCGCGACTGCGTCTATCCGTCAGCCACA
GGTGCATCCAAGTCAGGAACCCGTAGCGTGTCCAAGCCCAGAGGATCACT
GTTGCGTGGAAATGAGTCTTCCGCTCACCCGGGATCCGAGGACTTCCGCG
TCTTGGAGCCCATCGCCGACGAGGATGAGGATGGAACTAGTGTCGGGTCA
AGTACCCGACTGTCCCCAACAGCCGCACCCACATGGTCTAAACCCAACCT
CCCCAGACGACAAAGTGGTCAGTCTTTGAAGCAGCAGGGTGGGAGGCATG
TTGTTGCGACCGACTTGGGTGGTGCACGGATTGAGAATAGTAACTCGCCG
TCCCCGTCCTCGGATACGTCATCTAGATACGACTCGCTAAGCGCTCGGTC
GGCCAGTGTCGGTGTCACCCTGCCCGAACCATATGGATCCACTCTGCCCA
GTATAGCACATCTGCCGGACGACCTGCGATTTTATCTCAACTACCACCAA
GAATTCATCACGTACCGTCATTATTTCTTAAAACCGGTCAATGACCGGTT
TGTCCATCAAAGTATCATTGAGCTGGCGTTGCAGTATGATCCCCTGCTGT
ATGCCGTGGTGGGCTTTTCTGCATATCATCATTGTGTTCAAAACAACAGT
GGGAAACTATACACCTTTTTGAAATATTACAACTTCGCGTTGAAGCTCCT
GCGCAAGTCCTTGGGCTCGGGTGAGCCGCATAATGAGGCGACTCTGATCA
CGGTGCTTGTCCTCACCACATTCGAGGAATCCGTCGGGGACTGGGTCAAC
CTCATTGGCCACCATCAGGCTGCTCACGCCTTGGTGCGGGAGATCCTAAC
GCCGGAGTCTGCCAACCTGAACGAGCTACATGGCAACATCTTCGTTTGGT
ACGCCCGATTCGACGTGGTAGCAGGGATTTTGGCCGGAAATGAGACGATC
CTAAGTCGTGATTGGTATGTTGCAAAAGAGGAGTATGATGCTCAGGAAGC
CGCCCGCCATCCAAACGATGCAACGAAGCAACTGGCGCTGGCGAATTCGA
TCAACCGCCGGTTTGGCCTGGAAATGGCGTCATTATATGCGAAGTTGTCG
CGCGGTTTGATTCCAGTTAATGAGTTCATTATCCAGAACGAGTTGTTGGG
GCAGACCTTGGAAAGGGTACGAACCATCCTAGAATCGTTCAACGACTCTG
ATTACACCGTGCGGGAGTATCCTAATCAGGTTCCCTTGACCCCGGACGAC
GTCGTGGATCCGTATGTTCCCGGGGGAATGCACCACGGGCCCCTGTGGGA
AGTCAACATGACGTGGGTTGACTATTACTCCACCAAGGCCATGTACAAGT
ATCAGTCACTTCTTTCGGTCAGGCAATCATCGGTGGAAGAGTTACAATCC
CTCTCGGTGGAGCTGGTCCGGCTAATGGAGGCGGTTGATCGATGGCCCAT
GAAGGAAAGCGGATGCATCCTGGCGTTCAAGAACAGCATCGGAATGGCCG
CCATGTTCTGTCCTCGCGATGAACGGTACATTATGTGGGCGCGGAGGAAG
TTCGCTCAGCTGGAGCAAAGCGGATACGTTATTGCGGCCACTTTCCGGGC
GGCACTGGCAGCCTCGTGGCAGAAGCCCGAAGTCAATCGCTGGTGGTTGC
CAGACGACGAAGGATACCCGAGCATCATCCGTGAGGTGCGAGCGATGACG
GAAGAACGCACGAGCCACCCTCGAGATAACTTCGGCGAGGATGTCAGCCA
TATGAAGACGCTATTTTGGAACATCAGCTTGGACGACACCTCCAGCGAGG
GGAGTCCCGCGTCGGTGAACACAGAAGGCCGACCATGAATGGCACCTCCA
TACTCCAGTTCCCAGGCCGCCTTGACCGGCTATACTCCCTCATTCCTGTC
GCTACAGGACCAGAACGCTCCTCTCTCCGCCTACTCCATCCTAGGATCCG
GTCAATATCCCGATAGTGTCGCATACTGGCACAATCCATCCGCGCAACCC
CAGCCGCCGCTACCTCCCGCCGCCGTCGCCGCCTCCTATCCGTCCGTGCC
CCCGAAGGCCCAGTCGCTCCTCCAGCCCACCTCCGATCAGAAGAAGCATA
AGCGTACTCGCAGTGGCTGTTTCACCTGTCGATCCCGTCGCATCAAGTGC
GACGAAGCACGTCCCGTCTGCGACAGATGTCGGAAGGGCAACCGCGACTG
CGTCTATCCGTCAGCCACAGGTGCATCCAAGTCAGGAACCCGTAGCGTGT
CCAAGCCCAGAGGATCACTGTTGCGTGGAAATGAGTCTTCCGCTCACCCG
GGATCCGAGGACTTCCGCGTCTTGGAGCCCATCGCCGACGAGGATGAGGA
TGGAACTAGTGTCGGGTCAAGTACCCGACTGTCCCCAACAGCCGCACCCA
CATGGTCTAAACCCAACCTCCCCAGACGACAAAGTGGTCAGTCTTTGAAG
CAGCAGGGTGGGAGGCATGTTGTTGCGACCGACTTGGGTGGTGCACGGAT
TGAGAATAGTAACTCGCCGTCCCCGTCCTCGGATACGTCATCTAGATACG
ACTCGCTAAGCGCTCGGTCGGCCAGTGTCGGTGTCACCCTGCCCGAACCA
TATGGATCCACTCTGCCCAGTATAGCACATCTGCCGGACGACCTGCGATT
TTATCTCAACTACCACCAAGAATTCATCACGTACCGTCATTATTTCTTAA
AACCGGTCAATGACCGGTTTGTCCATCAAAGTATCATTGAGCTGGCGTTG
CAGTATGATCCCCTGCTGTATGCCGTGGTGGGCTTTTCTGCATATCATCA
TTGTGTTCAAAACAACAGTGGGAAACTATACACCTTTTTGAAATATTACA
ACTTCGCGTTGAAGCTCCTGCGCAAGTCCTTGGGCTCGGGTGAGCCGCAT
AATGAGGCGACTCTGATCACGGTGCTTGTCCTCACCACATTCGAGGAATC
CGTCGGGGACTGGGTCAACCTCATTGGCCACCATCAGGCTGCTCACGCCT
TGGTGCGGGAGATCCTAACGCCGGAGTCTGCCAACCTGAACGAGCTACAT
GGCAACATCTTCGTTTGGTACGCCCGATTCGACGTGGTAGCAGGGATTTT
GGCCGGAAATGAGACGATCCTAAGTCGTGATTGGTATGTTGCAAAAGAGG
AGTATGATGCTCAGGAAGCCGCCCGCCATCCAAACGATGCAACGAAGCAA
CTGGCGCTGGCGAATTCGATCAACCGCCGGTTTGGCCTGGAAATGGCGTC
ATTATATGCGAAGTTGTCGCGCGGTTTGATTCCAGTTAATGAGTTCATTA
TCCAGAACGAGTTGTTGGGGCAGACCTTGGAAAGGGTACGAACCATCCTA
GAATCGTTCAACGACTCTGATTACACCGTGCGGGAGTATCCTAATCAGGT
TCCCTTGACCCCGGACGACGTCGTGGATCCGTATGTTCCCGGGGGAATGC
ACCACGGGCCCCTGTGGGAAGTCAACATGACGTGGGTTGACTATTACTCC
ACCAAGGCCATGTACAAGTATCAGTCACTTCTTTCGGTCAGGCAATCATC
GGTGGAAGAGTTACAATCCCTCTCGGTGGAGCTGGTCCGGCTAATGGAGG
CGGTTGATCGATGGCCCATGAAGGAAAGCGGATGCATCCTGGCGTTCAAG
AACAGCATCGGAATGGCCGCCATGTTCTGTCCTCGCGATGAACGGTACAT
TATGTGGGCGCGGAGGAAGTTCGCTCAGCTGGAGCAAAGCGGATACGTTA
TTGCGGCCACTTTCCGGGCGGCACTGGCAGCCTCGTGGCAGAAGCCCGAA
GTCAATCGCTGGTGGTTGCCAGACGACGAAGGATACCCGAGCATCATCCG
TGAGGTGCGAGCGATGACGGAAGAACGCACGAGCCACCCTCGAGATAACT
TCGGCGAGGATGTCAGCCATATGAAGACGCTATTTTGGAACATCAGCTTG
GACGACACCTCCAGCGAGGGGAGTCCCGCGTCGGTGAACACAGAAGGCCG
ACCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006406-T1.utr5p1 | KJC3_006406-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006406-T1.utr3p1 | KJC3_006406-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5583803..5587353 + |
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