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KJC3_006488-T2, KJC3_006488-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006488-T2
Unique NameKJC3_006488-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5850917..5853918+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006488-T2 ID=KJC3_006488-T2|Name=KJC3_006488-T2|organism=Aspergillus niger KJC3|type=mRNA|length=3002bp|location=Sequence derived from alignment at ch4:5850917..5853918+ (Aspergillus niger KJC3)
CCGGAGTATCAGGTCCAGATCCCTCTAGAGGCCACTTTTTTACTATTTGT
GATCTCTGGTATTTAGGTGATTTGCCTTATTCCGGCTCTTCTATATATTC
ACGCTGGCCTCTCTTCCGTACCGATTCAAAGGGTCCAGTGGTGCCAACAT
GGCGCCCACCCAGACGGTGCAGCATCACCACCGATCCACAACCAAATCCG
CCAATAAACCATACAAGTCTCGCCATGCCTCCAAGAGTGCGCTGAAGGAT
AAGGCCAAGGGTATGTGCACCAGAGAATATTACACTGTGTCTGTTATCTT
GAAATAGCATCATAAACTGACATACATGCAGGCAAGGTTGAAAGACAAGA
GCGGGGCACCCGCAAGACCCCTCACCAGCAGCTCAAATCCAAACTCGATC
GCCGGAACCAGGCTCGCCAGAAGCAGCAATTGAAGCATCAGGAGAAGGCT
CAGTCTGTCAGCATTTTCTCAGGTCAGAACGGTGCCCCCCGCCATGTGGC
CGTTGTGCCGCTTTCCGTTGATATCGATGTGGCTGCCATCATCCGGGCCT
TGAACGAGAGTGTCGATGTTTCCGCGGAGATTTCCCCAGACTCTGCCACC
CGGGTTCGTGTCGATCGCTTCCGCCAGAGCCTGCAGTACATTCCGGCGAA
ATATGACTTGATGAACGCTTTGGATGTGTGCCGGATGGCCGATTTTGTGG
TCCTGGCCCTCTCCGCCCAGGTCGAAGTGGAGGAACAAGGAGAGCTGTTG
CTGCGGTCCATTGAGGGTCAGGGTATCTCGAACGTTATTGCCATGGTTCA
GGTAGGTTCAGGTTTCCTGTACATGGGGTTGAAACCTTTTCTTACTGACT
GGAACTTGCGTAGGGTCTTGACCAAATCAACCCGGCCAAGAAGCGCCCGC
AGGTGGCAGCTTCTCTCAAGTCTTTTGCGAACCACTTTTTCCCGTCCGTT
GAAAAGGTCCTCTCCGTGGACTCTCGCCAGGAGTGCTCCAACGCCATCCG
TTCCCTCTGCACAGCTACACCCAAGGGTATCCGCTGGCGTGACGAGCGCA
GCTGGATGTTCATCGAAAACGTTGAGTGGCCGGAGACCAATGCCGAGGAG
GTCGACGATGTTGTCGTTACTGGTGTTGTCCGCGGTAAAGGCCTGAAGGC
GGACCGTCTGGTTCACATCCCTGGATGGGGTGACTTCCAGATTGGTTCGA
TCACAGCAGCACCACTTGCTGCCGCCCGCGGGAAGCGTGATGATGCTATG
AATGTCGATGAGACCGAGGCTCCGCAGCTGTTGGATGGACCCTCTGCAGA
TTGCGATGATTTGGCCACTGTGGCACCAGAGGAGATTGAGATGGAGGACG
ACGACTTCCCTGTTGAGGAAGAGCGCAAGGGTGTCCTCCTGGACGACCAC
CACTACTTCTCCGATGACGAATCTCACATCCCTCCGAAGCCCAAGAGGCT
ACCAAAGGGTACCTCGGAGTACCAATCCGCTTGGTTCTTGGACGATGTGT
CCGACTCCGGCTCTGACCTTGAAGACGAGGAGGATGTTGAAGAGATGGAG
ATGGACACCGCGGGAGCGCCCGAAGACGGTGTCTTCCCCGATAACAGGGA
TGCCATGACGGAGGCTGGCCCATCGGAGTATCCCCAGTCAGAGATGTTCG
TCGACCCGTCACCAGAAGACGAGGCCAAAGACTTGGAGGAATACCGTGCG
AGCCGCAGAAAGGAAGCCAATGAAGATCTGGAGTTCCCTGACGAAATCGA
GCTTCACCCGAACGTTCTCGCTCGGGAGCGTCTGGCCCGCTTCAGAGGTC
TGAAGAGCTTCAAGACCAGCCCCTGGGAGACGTCAGAAGACCGTGCCTAC
GAGCCGGAAGACTGGCGCCGCCTGCTCCAATTCGCGGACTACAAGGGATC
CAGGAACAAGTTCCTCCGCGAGGCTCTCGTCGGAGGTGTCACCCCTGGTG
TGCGCGTTGATGTGCACCTCAAGGCCGTGCCAGCAACCCTCCGCAGCCGG
CCTCAGCCCACATCTCTCTTCTCTCTACTCCGTCATGAGCACAAGCACAC
CGTTGTCAACATCAACATGCACTTGAACTCCAGCGTCGAGGAGCCCCTGA
AGTCGAAGGAGCAGCTCGTCGTCCAGTGCGGTCCTCGCCGTCTGGTCGTC
AACCCCATCTTCTCCGCCGGCGACAACACCCCCAACAACGTGCACAAGTT
CGACCGCTTCCTCCACCCAGGCCGCAGCGCCGTCGCCTCCTGGATTGGTC
CTTTGACCTGGGGCGCCGTGCCTGTCCTCGTCTTCAAGAACAAGTCCAAC
CAGGACCCCGAGATTATGGACTCCGCCGAGGACGACTCCCTCAACAACTT
CGACAACCTCGAACTCATCGGAAACGGCACCATCGTGGCCCCCGACCAGT
CCCGCGTCGTTGCCAAGCGCGCCATCCTCACCGGTCACCCATACAAGATC
CACAAGCGCGTCGTCACCGTCCGTTACATGTTCTTCAACGCCGAGGACAT
CCAGTGGTTCAAGGCCCTCCAGCTCTGGACCAGACGCGGCCGCAGCGGTT
ATATCAAGGAATCCCTCGGTACGCACGGTTATTTCAAGGCTACCTTCGAC
GCCAAGATCAACCCCCAGGACTCTATCGGTATCAGTCTGTACAAGCGCGT
CTTCCCTCGCAAGGCTCGTGCTCTGGAGGATGTGGTCTATTAAAAATGAT
GTTGGAGATCGTGTTGTGTCGTTGTTTGTTCGCTTGCTTTGGGAAGCCTT
TTTGGGTTTAGGGCACATGATATGGCATGGCATGACATGCAGGAACGATA
TAGAGATATTACTTACTTACATACATTACATACTTCACCTACTTACTCAT
GATACCACAAAAGTTCGCTTCGGCATGAATTGATGAACTGTTACTGATTA
TGAATATCATTTGTTGATGAGGTGGTTCGATAGATAGATAAATACAGTTG
GCGTGAATTTTAGTATCTAGTTTGATTTGACCCGAGTGGTGCAACTTGTC
TC
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Coding sequence (CDS) from alignment at ch4:5850917..5853918+

>KJC3_006488-T2 ID=KJC3_006488-T2|Name=KJC3_006488-T2|organism=Aspergillus niger KJC3|type=CDS|length=1638bp|location=Sequence derived from alignment at ch4:5850917..5853918+ (Aspergillus niger KJC3)
ATGTTCATCGAAAACGTTGAGTGGCCGGAGACCAATGCCGAGGAGGTCGA
CGATGTTGTCGTTACTGGTGTTGTCCGCGGTAAAGGCCTGAAGGCGGACC
GTCTGGTTCACATCCCTGGATGGGGTGACTTCCAGATTGGTTCGATCACA
GCAGCACCACTTGCTGCCGCCCGCGGGAAGCGTGATGATGCTATGAATGT
CGATGAGACCGAGGCTCCGCAGCTGTTGGATGGACCCTCTGCAGATTGCG
ATGATTTGGCCACTGTGGCACCAGAGGAGATTGAGATGGAGGACGACGAC
TTCCCTGTTGAGGAAGAGCGCAAGGGTGTCCTCCTGGACGACCACCACTA
CTTCTCCGATGACGAATCTCACATCCCTCCGAAGCCCAAGAGGCTACCAA
AGGGTACCTCGGAGTACCAATCCGCTTGGTTCTTGGACGATGTGTCCGAC
TCCGGCTCTGACCTTGAAGACGAGGAGGATGTTGAAGAGATGGAGATGGA
CACCGCGGGAGCGCCCGAAGACGGTGTCTTCCCCGATAACAGGGATGCCA
TGACGGAGGCTGGCCCATCGGAGTATCCCCAGTCAGAGATGTTCGTCGAC
CCGTCACCAGAAGACGAGGCCAAAGACTTGGAGGAATACCGTGCGAGCCG
CAGAAAGGAAGCCAATGAAGATCTGGAGTTCCCTGACGAAATCGAGCTTC
ACCCGAACGTTCTCGCTCGGGAGCGTCTGGCCCGCTTCAGAGGTCTGAAG
AGCTTCAAGACCAGCCCCTGGGAGACGTCAGAAGACCGTGCCTACGAGCC
GGAAGACTGGCGCCGCCTGCTCCAATTCGCGGACTACAAGGGATCCAGGA
ACAAGTTCCTCCGCGAGGCTCTCGTCGGAGGTGTCACCCCTGGTGTGCGC
GTTGATGTGCACCTCAAGGCCGTGCCAGCAACCCTCCGCAGCCGGCCTCA
GCCCACATCTCTCTTCTCTCTACTCCGTCATGAGCACAAGCACACCGTTG
TCAACATCAACATGCACTTGAACTCCAGCGTCGAGGAGCCCCTGAAGTCG
AAGGAGCAGCTCGTCGTCCAGTGCGGTCCTCGCCGTCTGGTCGTCAACCC
CATCTTCTCCGCCGGCGACAACACCCCCAACAACGTGCACAAGTTCGACC
GCTTCCTCCACCCAGGCCGCAGCGCCGTCGCCTCCTGGATTGGTCCTTTG
ACCTGGGGCGCCGTGCCTGTCCTCGTCTTCAAGAACAAGTCCAACCAGGA
CCCCGAGATTATGGACTCCGCCGAGGACGACTCCCTCAACAACTTCGACA
ACCTCGAACTCATCGGAAACGGCACCATCGTGGCCCCCGACCAGTCCCGC
GTCGTTGCCAAGCGCGCCATCCTCACCGGTCACCCATACAAGATCCACAA
GCGCGTCGTCACCGTCCGTTACATGTTCTTCAACGCCGAGGACATCCAGT
GGTTCAAGGCCCTCCAGCTCTGGACCAGACGCGGCCGCAGCGGTTATATC
AAGGAATCCCTCGGTACGCACGGTTATTTCAAGGCTACCTTCGACGCCAA
GATCAACCCCCAGGACTCTATCGGTATCAGTCTGTACAAGCGCGTCTTCC
CTCGCAAGGCTCGTGCTCTGGAGGATGTGGTCTATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006488KJC3_006488Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006488-T2KJC3_006488-T2-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006488-T2.utr5p1KJC3_006488-T2.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_006488-T2.utr5p2KJC3_006488-T2.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006488-T2.exon1KJC3_006488-T2.exon1Aspergillus niger KJC3exon
KJC3_006488-T2.exon2KJC3_006488-T2.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006488-T2.cdsKJC3_006488-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006488-T2.utr3p1KJC3_006488-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012948
DBxrefInterPro:IPR007034
DBxrefPFAM:PF04950
DBxrefPFAM:PF08142
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5850917..5853918 +
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