You are here

Home

KJC3_006580-T1, KJC3_006580-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006580-T1
Unique NameKJC3_006580-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:6103630..6104650-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006580-T1 ID=KJC3_006580-T1|Name=KJC3_006580-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1021bp|location=Sequence derived from alignment at ch4:6103630..6104650- (Aspergillus niger KJC3)
AACTGTGCTTTGTCCTCTGTCATCCCTCATCCGTCATCCATCATTTAGAG
ATTCCAACTCCACGAACTACTTAATTACTGTTCTTCCTGTTCCAATTGTC
ATATTACCTTTCGAGTCAACGAAAGTTTTGAAAAAGGAGAACTATGGCTC
TTCCTGTGGACATCGACAGCATTTCTCTGACGCAGCAGCTGAGTTCACCA
CCCAAAGCATCATTGCAAATACTCGGGACGCACAGTGTCAACCAAGACAA
CAACTTCATTGATTTCGATATCTGGGTTGACTGCACGAAAATATACGGAA
TCGAATCTGCCAAGTTCCTGACAGACAGAGAAGTTGAATCTCGCTCTTGG
AGCTACTCGGCTGACCACGATAACGGCGACCCCAAAGTTATATTGGGCGG
ATGGCTTGATGATTGGTTAAATTATAATAATACGGACGATCGAAGGTCAG
TTCGGTTGATGACTTGGCCCCAATTGTCTTGTCCTATACTGACAGAACAT
GTCGGTTTCCAGCTGGGCTCTTTGGAAATCAGGTCATTTCCCCGATGAGG
ATTGCACTGCCCTGGAAGGTCATCTCGAGCGCCTGGCACGGAAGACTGCC
TACGGCGGGACTGTAGAGGTGTTGTTCCATACCCCCTCAACGGAATTCGA
AGCAGGAAAGAATGCCTCGAATGAGAACACAAACATTGCAAATATTTATG
TGCATTGGACCTTTGAGTGCCCTTTCACACCGATCGATCAGGTGTGGAGC
GAGCTGGTCATGAACGCGATGGTGGACCATAAGAAGGGCTGGATCGAGCC
GCATCTACCGAAGCCCTCACACGGGATGTCTCCTTTTCGGAGGGCAATGA
GAGCCAACGGTACTTCCCGTATTGTATCGCAAGAGCAGGATTCTAATGAA
GTAACGCGCTCGGTACGGCAGTTCTCATCATGGGGTTGTGACGCCTCAGT
GTAAAAAGAATAAAAACTGCAATATTGTCGATTTAGCAATTCACGCTCAT
TGCTCTGACATCGACCTGGCT
back to top

Coding sequence (CDS) from alignment at ch4:6103630..6104650-

>KJC3_006580-T1 ID=KJC3_006580-T1|Name=KJC3_006580-T1|organism=Aspergillus niger KJC3|type=CDS|length=1488bp|location=Sequence derived from alignment at ch4:6103630..6104650- (Aspergillus niger KJC3)
CTGGGCTCTTTGGAAATCAGGTCATTTCCCCGATGAGGATTGCACTGCCC
TGGAAGGTCATCTCGAGCGCCTGGCACGGAAGACTGCCTACGGCGGGACT
GTAGAGGTGTTGTTCCATACCCCCTCAACGGAATTCGAAGCAGGAAAGAA
TGCCTCGAATGAGAACACAAACATTGCAAATATTTATGTGCATTGGACCT
TTGAGTGCCCTTTCACACCGATCGATCAGGTGTGGAGCGAGCTGGTCATG
AACGCGATGGTGGACCATAAGAAGGGCTGGATCGAGCCGCATCTACCGAA
GCCCTCACACGGGATGTCTCCTTTTCGGAGGGCAATGAGAGCCAACGGTA
CTTCCCGTATTGTATCGCAAGAGCAGGATTCTAATGAAGTAACGCGCTCG
GTACGGCAGTTCTCATCATGGGGTTGTGACGCCTCAGTGTAAATGGCTCT
TCCTGTGGACATCGACAGCATTTCTCTGACGCAGCAGCTGAGTTCACCAC
CCAAAGCATCATTGCAAATACTCGGGACGCACAGTGTCAACCAAGACAAC
AACTTCATTGATTTCGATATCTGGGTTGACTGCACGAAAATATACGGAAT
CGAATCTGCCAAGTTCCTGACAGACAGAGAAGTTGAATCTCGCTCTTGGA
GCTACTCGGCTGACCACGATAACGGCGACCCCAAAGTTATATTGGGCGGA
TGGCTTGATGATTGGTTAAATTATAATAATACGGACGATCGAAGCTGGGC
TCTTTGGAAATCAGGTCATTTCCCCGATGAGGATTGCACTGCCCTGGAAG
GTCATCTCGAGCGCCTGGCACGGAAGACTGCCTACGGCGGGACTGTAGAG
GTGTTGTTCCATACCCCCTCAACGGAATTCGAAGCAGGAAAGAATGCCTC
GAATGAGAACACAAACATTGCAAATATTTATGTGCATTGGACCTTTGAGT
GCCCTTTCACACCGATCGATCAGGTGTGGAGCGAGCTGGTCATGAACGCG
ATGGTGGACCATAAGAAGGGCTGGATCGAGCCGCATCTACCGAAGCCCTC
ACACGGGATGTCTCCTTTTCGGAGGGCAATGAGAGCCAACGGTACTTCCC
GTATTGTATCGCAAGAGCAGGATTCTAATGAAGTAACGCGCTCGGTACGG
CAGTTCTCATCATGGGGTTGTGACGCCTCAGTGTAAATGGCTCTTCCTGT
GGACATCGACAGCATTTCTCTGACGCAGCAGCTGAGTTCACCACCCAAAG
CATCATTGCAAATACTCGGGACGCACAGTGTCAACCAAGACAACAACTTC
ATTGATTTCGATATCTGGGTTGACTGCACGAAAATATACGGAATCGAATC
TGCCAAGTTCCTGACAGACAGAGAAGTTGAATCTCGCTCTTGGAGCTACT
CGGCTGACCACGATAACGGCGACCCCAAAGTTATATTGGGCGGATGGCTT
GATGATTGGTTAAATTATAATAATACGGACGATCGAAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006580KJC3_006580Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006580-T1KJC3_006580-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006580-T1.cdsKJC3_006580-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006580-T1.utr3p1KJC3_006580-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006580-T1.exon2KJC3_006580-T1.exon2Aspergillus niger KJC3exon
KJC3_006580-T1.exon1KJC3_006580-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006580-T1.utr5p1KJC3_006580-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteantiSMASH:Cluster_4.13
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:6103630..6104650 -
Powered by Drupal