You are here

Home

KJC3_006602-T1, KJC3_006602-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006602-T1
Unique NameKJC3_006602-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:6153957..6154938+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006602-T1 ID=KJC3_006602-T1|Name=KJC3_006602-T1|organism=Aspergillus niger KJC3|type=mRNA|length=982bp|location=Sequence derived from alignment at ch4:6153957..6154938+ (Aspergillus niger KJC3)
CTCATCAATCGGAATTAAGATGTCATCATCATCGACCCACCGAAGCACGG
CTACGCTACGCAGAATGTATCCTGCAAGAATTGCTTCTATATAGTTCCTT
TACAGCATATTTGACTATTCACAAGATCCCCTCACCTCATCAAACATCAA
TAACCCCAAACCAAGCTCATAAGCCCGCTCCCCCTCCAAAATGTCCTCAC
CTCAAGTTCTTCCACCTCTCCCAAACACCCGCCGCATCATCACAACCCAC
AACGCCTCCCGCTCCGCCACTATCGCCATCAATGAACACAAAGAACCCAC
CGCCCTCGAGGACGGAACGTACCTTAACCCCCTCTGGTCATCCGACGAGC
TCCCCGCCACGATCGACCAGGACCCAACCAAGATCCAGCCCAACCCGACC
GCCGCGACAACCGGTGGCTCCGTCTTCAGCACCTACGATCTGCCCCCGAA
ATACGAGGGCCCGATGCATCGCTCCATCACCCTCGATTATATCACCGTCA
CCCAAGGCGTAGTCACGCTGAGCACGGACGATGGGTCCACGGTGACGCTG
CGGGCGGGCGACACGGTCGTGCAGAGGGGCACCATGCACAAGTGGGGGAA
TCCGTCGGATGAATGGGCTAGGTTGACTTCGGTAATGGTGCAGGCAAGGC
CGGTGGTGGTGGATGGGAAGGAGATGGAGGCTGTGTGGCCGTTTTAGTTT
CTTCGTTGTTGCAGTGATGAGGATGTGCTGGCTGACTTGCTGAGTTATTC
AGTCCCGGGGCTTGTACGAGGATATGAGCGGTGTGATGGGTTTGTGTGGA
AGGCGTATAGGGACTGATCTGTCTACTTCAGAATAATTAGAAGTGGTTTG
TTTTTCATTTTCTTCTTTTTTTTCTATGGAGATTGATTTGCGAACCAAGT
CCTGTTATCCCTTAGCCTAGGGGAGCTCATTTATGAGTACGACCAAGCCT
GGCGAATATCTCCCTCTGTTTCGCATCCTCCC
back to top

Coding sequence (CDS) from alignment at ch4:6153957..6154938+

>KJC3_006602-T1 ID=KJC3_006602-T1|Name=KJC3_006602-T1|organism=Aspergillus niger KJC3|type=CDS|length=507bp|location=Sequence derived from alignment at ch4:6153957..6154938+ (Aspergillus niger KJC3)
ATGTCCTCACCTCAAGTTCTTCCACCTCTCCCAAACACCCGCCGCATCAT
CACAACCCACAACGCCTCCCGCTCCGCCACTATCGCCATCAATGAACACA
AAGAACCCACCGCCCTCGAGGACGGAACGTACCTTAACCCCCTCTGGTCA
TCCGACGAGCTCCCCGCCACGATCGACCAGGACCCAACCAAGATCCAGCC
CAACCCGACCGCCGCGACAACCGGTGGCTCCGTCTTCAGCACCTACGATC
TGCCCCCGAAATACGAGGGCCCGATGCATCGCTCCATCACCCTCGATTAT
ATCACCGTCACCCAAGGCGTAGTCACGCTGAGCACGGACGATGGGTCCAC
GGTGACGCTGCGGGCGGGCGACACGGTCGTGCAGAGGGGCACCATGCACA
AGTGGGGGAATCCGTCGGATGAATGGGCTAGGTTGACTTCGGTAATGGTG
CAGGCAAGGCCGGTGGTGGTGGATGGGAAGGAGATGGAGGCTGTGTGGCC
GTTTTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006602KJC3_006602Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006602-T1.utr5p1KJC3_006602-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006602-T1.exon1KJC3_006602-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006602-T1.cdsKJC3_006602-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006602-T1.utr3p1KJC3_006602-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006602-T1KJC3_006602-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_4.14
DBxrefInterPro:IPR011051
DBxrefInterPro:IPR014710
DBxrefInterPro:IPR013096
DBxrefPFAM:PF07883
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:6153957..6154938 +
Powered by Drupal