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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:19716..21249- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006658-T1 ID=KJC3_006658-T1|Name=KJC3_006658-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1534bp|location=Sequence derived from alignment at ch5:19716..21249- (Aspergillus niger KJC3)
GGCCCAGCTGGGTCGCCTTTTCGCGAACAGCTGGCTGTGATATTTCCCTT
CTGTCCTCATCTCACTTCCCGGTAACTCACAGTTTGATAATTGTCACCAC
GTTTCGCTCTCGGTTGTTCGATATACTCTTTGCTCGTCGAATCCAACTAC
CATCTCGTAACCGTCCTAGGGCTACTACGGCCGTCACCACCACCGCCGCC
ATGGTCAAGTTTTTTCAGCCCAAGATTGATCCCTTGCCTACGGGCATTGA
CTTGACGGGCAAGACCGCGGTCATCACCGGTGCCAGTGCAGGTATGGGTC
TGGAAGTCACCAAGCAGCTTTTGCGCTTGCGCCTCTCCACCGCCATCCTC
GCCGTGCGCAATGTCACCAAAGGGGAGGCCTGCATCAAATCGCTGCTGCA
GGACCGCGGCATTCAAACCCACAACCCCAAACCCACCATAAAGGTCATGG
AGCTTGACATGGACCGATATGATAGCGTGCAGCAATTCGCGAAAACTCTC
CGCGAAGAGGTTCCAGTCGTTGATCTCCTCATTCTCAATGCGGGGGTTGC
TTCTCTGAACTTCGAACGTAGCCCAAGTGGCCACGAGAGGGTGACCCAGG
TCAACTACTGCTCTAACGTCCTGCTCGTGGCGGAGCTTCTCCCTCACCTG
GAAGCCGGTGCGGAGCAGACCGGTTCCCCTGCCCGGATCAGCTGGGTAGG
CAGTCGTTCGCACGAGACACCCAGTTTCGAGAAGAAGGCCCCCATTGAAG
CCGACGAGGGGGTCTTGGAGCATATGGACAAGGAGGAAGCTTTTGTCCCC
TTCCAACGGTATAATGATACCAAGTTACTCTGTGTGCTGTTCTTGTACAG
CCTGGCGCCGCGCCTGGACCCTAAAAAGGTCGTCATCAATACGATGTGTC
CGGGTATGGTGAACACCGGGATGAGCAACATGCTCCCACTACATCTGCGC
TTGATTTTCAACGTTATCAAAGCCATTCGGGCCCGTCCAGTCGAGGTTGG
GGGCTGGATTATCTTGAACGCTGCCCTCGTTGCAGGCCCAGAGTCCCATG
GGAAGTTCCTGGCGGATAAGACCATCACTGAGTAAGTCCCTCTTGAGCTT
CGTCCCGATAAGCCCCACCACTAACATGAATTTTTCTTTTAGAAAATCCG
CAATTGTTACCTCCCCGATGGGCCAGGATATTCAAAAGAAACTTTGGGAA
GAGACAATCACCGAAATGAGCAAGTTGACCACCCTTCCTCCCCAGTTCCG
TTAGATTGAACTGGTAAACATGCCATGACGACGGATTACGTGGTTCCTGC
TTGTTCTAAACCTTTTTAATACTCCCTTGGCTTTTTCGAGTATTTCTATG
TTTTCCTTTCTTCTTATTCACCTCGACTATTGTGGTTCCTGCCTTCCGCT
ATATCTCTTTCTTTCGTCGACCAGTGCAAGTGGTACGATTACGACATTTC
GTATACTAGAAGAACTATTCTGAACGCATATACCTAGCTCAATCCTACCC
ACTAAGTATCAATAAAACCTTTAGGCACGTTAAA back to topCoding sequence (CDS) from alignment at ch5:19716..21249- >KJC3_006658-T1 ID=KJC3_006658-T1|Name=KJC3_006658-T1|organism=Aspergillus niger KJC3|type=CDS|length=1986bp|location=Sequence derived from alignment at ch5:19716..21249- (Aspergillus niger KJC3)
AAAATCCGCAATTGTTACCTCCCCGATGGGCCAGGATATTCAAAAGAAAC
TTTGGGAAGAGACAATCACCGAAATGAGCAAGTTGACCACCCTTCCTCCC
CAGTTCCGTTAGATGGTCAAGTTTTTTCAGCCCAAGATTGATCCCTTGCC
TACGGGCATTGACTTGACGGGCAAGACCGCGGTCATCACCGGTGCCAGTG
CAGGTATGGGTCTGGAAGTCACCAAGCAGCTTTTGCGCTTGCGCCTCTCC
ACCGCCATCCTCGCCGTGCGCAATGTCACCAAAGGGGAGGCCTGCATCAA
ATCGCTGCTGCAGGACCGCGGCATTCAAACCCACAACCCCAAACCCACCA
TAAAGGTCATGGAGCTTGACATGGACCGATATGATAGCGTGCAGCAATTC
GCGAAAACTCTCCGCGAAGAGGTTCCAGTCGTTGATCTCCTCATTCTCAA
TGCGGGGGTTGCTTCTCTGAACTTCGAACGTAGCCCAAGTGGCCACGAGA
GGGTGACCCAGGTCAACTACTGCTCTAACGTCCTGCTCGTGGCGGAGCTT
CTCCCTCACCTGGAAGCCGGTGCGGAGCAGACCGGTTCCCCTGCCCGGAT
CAGCTGGGTAGGCAGTCGTTCGCACGAGACACCCAGTTTCGAGAAGAAGG
CCCCCATTGAAGCCGACGAGGGGGTCTTGGAGCATATGGACAAGGAGGAA
GCTTTTGTCCCCTTCCAACGGTATAATGATACCAAGTTACTCTGTGTGCT
GTTCTTGTACAGCCTGGCGCCGCGCCTGGACCCTAAAAAGGTCGTCATCA
ATACGATGTGTCCGGGTATGGTGAACACCGGGATGAGCAACATGCTCCCA
CTACATCTGCGCTTGATTTTCAACGTTATCAAAGCCATTCGGGCCCGTCC
AGTCGAGGTTGGGGGCTGGATTATCTTGAACGCTGCCCTCGTTGCAGGCC
CAGAGTCCCATGGGAAGTTCCTGGCGGATAAGACCATCACTGAAAAATCC
GCAATTGTTACCTCCCCGATGGGCCAGGATATTCAAAAGAAACTTTGGGA
AGAGACAATCACCGAAATGAGCAAGTTGACCACCCTTCCTCCCCAGTTCC
GTTAGATGGTCAAGTTTTTTCAGCCCAAGATTGATCCCTTGCCTACGGGC
ATTGACTTGACGGGCAAGACCGCGGTCATCACCGGTGCCAGTGCAGGTAT
GGGTCTGGAAGTCACCAAGCAGCTTTTGCGCTTGCGCCTCTCCACCGCCA
TCCTCGCCGTGCGCAATGTCACCAAAGGGGAGGCCTGCATCAAATCGCTG
CTGCAGGACCGCGGCATTCAAACCCACAACCCCAAACCCACCATAAAGGT
CATGGAGCTTGACATGGACCGATATGATAGCGTGCAGCAATTCGCGAAAA
CTCTCCGCGAAGAGGTTCCAGTCGTTGATCTCCTCATTCTCAATGCGGGG
GTTGCTTCTCTGAACTTCGAACGTAGCCCAAGTGGCCACGAGAGGGTGAC
CCAGGTCAACTACTGCTCTAACGTCCTGCTCGTGGCGGAGCTTCTCCCTC
ACCTGGAAGCCGGTGCGGAGCAGACCGGTTCCCCTGCCCGGATCAGCTGG
GTAGGCAGTCGTTCGCACGAGACACCCAGTTTCGAGAAGAAGGCCCCCAT
TGAAGCCGACGAGGGGGTCTTGGAGCATATGGACAAGGAGGAAGCTTTTG
TCCCCTTCCAACGGTATAATGATACCAAGTTACTCTGTGTGCTGTTCTTG
TACAGCCTGGCGCCGCGCCTGGACCCTAAAAAGGTCGTCATCAATACGAT
GTGTCCGGGTATGGTGAACACCGGGATGAGCAACATGCTCCCACTACATC
TGCGCTTGATTTTCAACGTTATCAAAGCCATTCGGGCCCGTCCAGTCGAG
GTTGGGGGCTGGATTATCTTGAACGCTGCCCTCGTTGCAGGCCCAGAGTC
CCATGGGAAGTTCCTGGCGGATAAGACCATCACTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006658-T1.utr3p1 | KJC3_006658-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006658-T1.utr5p1 | KJC3_006658-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_5.1 |
| Note | SMCOG1001:short-chain dehydrogenase/reductase SDR |
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:19716..21249 - |
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