|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:21654..22846+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006659-T1 ID=KJC3_006659-T1|Name=KJC3_006659-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1193bp|location=Sequence derived from alignment at ch5:21654..22846+ (Aspergillus niger KJC3)
CCAATTCCATTCTTGTCTTCTTTCTTTTTTTCTTGCTCTCCCGGGTTTGC
CCCTGAGATTCATTATTCCCTCATCCCCCTGCTCTTCCTCCTACTACCCC
TACGGATAGACTACTTAAACTACTAGGTGCTGTGGCACAGGACTCAGGAT
TTAGTACCTACTAGTTGTATAGTAGTATACTTTGCGACTACCTGCCATGG
CCCCCTGCAAGCCCCGGACATTCACTGCGGGCGAAGACCCGCTGACCAAG
TTCGATGGAGCCATCTCCGTCGCCACGATGCCTCGCCCGGCAGATCGTCA
ATTCCTCTTCCATGGAATCATGCGGCCCAGTCGTGGCATCTACGCCAAGC
TTGTTGCGACCGGGAAGAAGCCCCCAACCCACTTCCATCCCTCGCAGTGG
GAATTCTTCCGTGTCCTTCGGGGTAACCTCACCGTTGACATCAATGGCGT
ACCCGTGCACCGCACCGTCGACGATGGGGAGATGGCAGTACCCCCGTATA
CCCATCATGTCATTTATGGCACCCCTGGCACGGAGATGAATGAAGTCGAA
TTTCTCGTCAGTGCTACAGATGAGGAAGAGGGGGCCACGGCCATGGATCA
AGAATTCTTCGAAAATTGGTATGGGTATCAGGAGGACATCTTCCAGCGGG
GGGAGAAGATCGACTTGATTCAAGTGCTAGCGGTGAGTAAAACTTGGTAG
CTAAGCTTCCTTCGGGGCTTTTCCCTGCAATGCAATCGGCAGGCCGGCTC
ATTGACGTTCCGGTAGATGTTCGATGCCGGAGGTACATATCTGTCCCCGC
CGTGGTGGGTGCCCTTTCGCGCCTGGGTTGGCCTAATCCTGGGCATCGTG
ATCGGCCGATGGATCGGTGGACTACTGGGCTATGCCCCTTTCTACCCTGA
ATGGACGACCAATTGGGACGCGGCCTGCGATAGAATGGAACAAAGTTGGT
TCCAGCGTCGATATGCAGATCGGGGAGCACAGCAGCGAGCACGAGAGAAG
TTTCAGGTGCAAAAGGGGCAGGGAACCGTGGCCAAAGGTGAAAAGTCGGA
GTAGAAGAGAATACGGAACACATTGACCTTTATTATCACACGATACTATC
GAAGGAAGAGAACAAATACTACTCCTTCTGGATGTGCATAGAGTTATATA
TATTCTAAAAGATAGGTTATCACTAGCATGCATCGAATCTGAC back to topCoding sequence (CDS) from alignment at ch5:21654..22846+ >KJC3_006659-T1 ID=KJC3_006659-T1|Name=KJC3_006659-T1|organism=Aspergillus niger KJC3|type=CDS|length=1548bp|location=Sequence derived from alignment at ch5:21654..22846+ (Aspergillus niger KJC3)
ATGGCCCCCTGCAAGCCCCGGACATTCACTGCGGGCGAAGACCCGCTGAC
CAAGTTCGATGGAGCCATCTCCGTCGCCACGATGCCTCGCCCGGCAGATC
GTCAATTCCTCTTCCATGGAATCATGCGGCCCAGTCGTGGCATCTACGCC
AAGCTTGTTGCGACCGGGAAGAAGCCCCCAACCCACTTCCATCCCTCGCA
GTGGGAATTCTTCCGTGTCCTTCGGGGTAACCTCACCGTTGACATCAATG
GCGTACCCGTGCACCGCACCGTCGACGATGGGGAGATGGCAGTACCCCCG
TATACCCATCATGTCATTTATGGCACCCCTGGCACGGAGATGAATGAAGT
CGAATTTCTCGTCAGTGCTACAGATGAGGAAGAGGGGGCCACGGCCATGG
ATCAAGAATTCTTCGAAAATTGGTATGGGTATCAGGAGGACATCTTCCAG
CGGGGGGAGAAGATCGACTTGATTCAAGTGCTAGCGATGTTCGATGCCGG
AGGTACATATCTGTCCCCGCCGTGGTGGGTGCCCTTTCGCGCCTGGGTTG
GCCTAATCCTGGGCATCGTGATCGGCCGATGGATCGGTGGACTACTGGGC
TATGCCCCTTTCTACCCTGAATGGACGACCAATTGGGACGCGGCCTGCGA
TAGAATGGAACAAAGTTGGTTCCAGCGTCGATATGCAGATCGGGGAGCAC
AGCAGCGAGCACGAGAGAAGTTTCAGGTGCAAAAGGGGCAGGGAACCGTG
GCCAAAGGTGAAAAGTCGGAGTAGATGGCCCCCTGCAAGCCCCGGACATT
CACTGCGGGCGAAGACCCGCTGACCAAGTTCGATGGAGCCATCTCCGTCG
CCACGATGCCTCGCCCGGCAGATCGTCAATTCCTCTTCCATGGAATCATG
CGGCCCAGTCGTGGCATCTACGCCAAGCTTGTTGCGACCGGGAAGAAGCC
CCCAACCCACTTCCATCCCTCGCAGTGGGAATTCTTCCGTGTCCTTCGGG
GTAACCTCACCGTTGACATCAATGGCGTACCCGTGCACCGCACCGTCGAC
GATGGGGAGATGGCAGTACCCCCGTATACCCATCATGTCATTTATGGCAC
CCCTGGCACGGAGATGAATGAAGTCGAATTTCTCGTCAGTGCTACAGATG
AGGAAGAGGGGGCCACGGCCATGGATCAAGAATTCTTCGAAAATTGGTAT
GGGTATCAGGAGGACATCTTCCAGCGGGGGGAGAAGATCGACTTGATTCA
AGTGCTAGCGATGTTCGATGCCGGAGGTACATATCTGTCCCCGCCGTGGT
GGGTGCCCTTTCGCGCCTGGGTTGGCCTAATCCTGGGCATCGTGATCGGC
CGATGGATCGGTGGACTACTGGGCTATGCCCCTTTCTACCCTGAATGGAC
GACCAATTGGGACGCGGCCTGCGATAGAATGGAACAAAGTTGGTTCCAGC
GTCGATATGCAGATCGGGGAGCACAGCAGCGAGCACGAGAGAAGTTTCAG
GTGCAAAAGGGGCAGGGAACCGTGGCCAAAGGTGAAAAGTCGGAGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006659-T1.utr5p1 | KJC3_006659-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006659-T1.utr3p1 | KJC3_006659-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_5.1 |
| DBxref | InterPro:IPR011051 |
| DBxref | InterPro:IPR014710 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:21654..22846 + |
|
