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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:61113..62897- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006676-T1 ID=KJC3_006676-T1|Name=KJC3_006676-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1785bp|location=Sequence derived from alignment at ch5:61113..62897- (Aspergillus niger KJC3)
CCCGGGTGTTGAACAATCAATCGCCGTTCCTCTTCCATCGTCTAATTCGG
CACCGTGGTGAACGTGTCATTCTTTTCTCGTGTGCGCCTGATTTGCTGTG
TTGAGCGGTTGATTCCTGTTTCAGCGCTCTGTTGATTACCCCGCCATCTC
TCCCCTCCGACTGGGAAACACGACCAACGACTTGCATCCGAAACATCATC
TTCGACCCCTTACCTCTACTTCCTTTACGGTTTTTCTATACATCATCAGA
ATGGCGTCTGAACAACCTGAGGCCGGTTCTCTTGCGGACCGCATCACCAA
GCCGGAGGAATCTGCCCCTGCTGGTACGATATTTGTCTACTTCTATGCCA
CCGCTCGTTTCACTTCCATGTCACTTTCTTACCAATCCCTATCGGACCCT
GACTTATGCGATCATCTTGTGCAGAAGCTCCCGAACAGACCGAAGACATC
CCTCAGACCGATGGTGCCGCCGCTCAGCAGGGTGGCTCCGATCTCCATGA
GCCTGACTACACCGTTGAAGTCAAGCTCAGCGATCTCCAGGCCGACCCGA
ATAACCCCCTTTTCTCCGTAAAGAACTTTGAAGATCTCGGCCTGTGCGTG
GATCCGTCAATCTCGGTTGTTGTGCTGCTACACTAGGGTGCTAACCCATC
GTGAAATCAGGGACCCCCGTATCCTCCAGGGATTGTCGGCAATGAACTTC
CGGAAACCCTCCAAGATCCAAGAGAGAGCCCTCCCGCTGCTACTTGGCAA
CCCCGCCAAGAATCTGGTCGGTCAGTCTCAGTCCGGTACTGGAAAGACTG
CGGCCTTCGTCCTGAACATCCTCAGTCGATTGGACCTCTCGTCGGAGCAG
TTGCAAAAGACCCCCCAGGCGTTGATCCTGGCCCCCACACGAGAGCTGGC
TCGTCAGATTGTTGGTGTCATTCAAGTTATGGGCCAGTTCCTTGATGGGC
TCGTTATTGGTACCGCTGTGCCGGCAGATACCGGCGCACGCCCGGCCAAG
ATGGAGTGCTCCGTCGTTGTGGGTACTCCTGGTACTGTTATGGACATGAT
TAAGAGGCGCATCATGATTGCGAACAAGCTCCGCGTGCTTGTTCTCGACG
AAGCCGACAACATGCTGGACCAGCAAGGTCTGGGTGACCAGTGTATCCGT
GTGAAGGCGTCAGTATCTCTACTTTTACGCTTTGCGCCACTCGTACTAAA
GTCCATCCAGTTTGTTGCCTAGGGATATCCAGGTCGTCCTCTTTTCCGCT
ACCTTCCCTGCTCACGTCCACGAATATGCGTCCAAGTTCGCTCCTCAGGC
CAACGAGATTACCCTCCAGCACGAGGAGTTGACCGTCGAGGGTATCAAGC
AGCTGTACCTGGACTGCTCGAATGACGAGGACAAGTACCAGACCCTTGTC
AATCTCTACGGTCTGCTCACCGTCGGCTCGTCCATCATCTTCGTTAAGGT
TTGTTCACGTCCTCTACAACATTGCAATGTCTCTAACGGAGGATTAGACC
CGTGCTTCGGCCCAGGAGATCGAAAAGCGCATGGTTGCCGAGGGTCACAC
CGTGGCATCTCTTACCGGTGGCATTGAGGGTTCGCAGCGTGATGCAGTCA
TTGACCAATTCCGTGCCGGACACGCGAAGGTCTTGATTACGACCAACGTG
CTTGCCCGAGGTATTGATGTCTCGACTGTGTCCATGGTTATCAACTACGT
AAGCAATGCCCTTTCGATGATCGTTGCGGGTTGAAATGCTAATGACGCAT
CCTAATAAATAGGATATCCCTGAGATCCACCAACC back to topCoding sequence (CDS) from alignment at ch5:61113..62897- >KJC3_006676-T1 ID=KJC3_006676-T1|Name=KJC3_006676-T1|organism=Aspergillus niger KJC3|type=CDS|length=6075bp|location=Sequence derived from alignment at ch5:61113..62897- (Aspergillus niger KJC3)
ACCCGTGCTTCGGCCCAGGAGATCGAAAAGCGCATGGTTGCCGAGGGTCA
CACCGTGGCATCTCTTACCGGTGGCATTGAGGGTTCGCAGCGTGATGCAG
TCATTGACCAATTCCGTGCCGGACACGCGAAGGTCTTGATTACGACCAAC
GTGCTTGCCCGAGGTATTGATGTCTCGACTGTGTCCATGGTTATCAACTA
CGTAAGCAATGCCCTTTCGATGATCGTTGCGGGTTGATTTGTTGCCTAGG
GATATCCAGGTCGTCCTCTTTTCCGCTACCTTCCCTGCTCACGTCCACGA
ATATGCGTCCAAGTTCGCTCCTCAGGCCAACGAGATTACCCTCCAGCACG
AGGAGTTGACCGTCGAGGGTATCAAGCAGCTGTACCTGGACTGCTCGAAT
GACGAGGACAAGTACCAGACCCTTGTCAATCTCTACGGTCTGCTCACCGT
CGGCTCGTCCATCATCTTCGTTAAGGGACCCCCGTATCCTCCAGGGATTG
TCGGCAATGAACTTCCGGAAACCCTCCAAGATCCAAGAGAGAGCCCTCCC
GCTGCTACTTGGCAACCCCGCCAAGAATCTGGTCGGTCAGTCTCAGTCCG
GTACTGGAAAGACTGCGGCCTTCGTCCTGAACATCCTCAGTCGATTGGAC
CTCTCGTCGGAGCAGTTGCAAAAGACCCCCCAGGCGTTGATCCTGGCCCC
CACACGAGAGCTGGCTCGTCAGATTGTTGGTGTCATTCAAGTTATGGGCC
AGTTCCTTGATGGGCTCGTTATTGGTACCGCTGTGCCGGCAGATACCGGC
GCACGCCCGGCCAAGATGGAGTGCTCCGTCGTTGTGGGTACTCCTGGTAC
TGTTATGGACATGATTAAGAGGCGCATCATGATTGCGAACAAGCTCCGCG
TGCTTGTTCTCGACGAAGCCGACAACATGCTGGACCAGCAAGGTCTGGGT
GACCAGTGTATCCGTGTGAAGGCAAGCTCCCGAACAGACCGAAGACATCC
CTCAGACCGATGGTGCCGCCGCTCAGCAGGGTGGCTCCGATCTCCATGAG
CCTGACTACACCGTTGAAGTCAAGCTCAGCGATCTCCAGGCCGACCCGAA
TAACCCCCTTTTCTCCGTAAAGAACTTTGAAGATCTCGGCCTATGGCGTC
TGAACAACCTGAGGCCGGTTCTCTTGCGGACCGCATCACCAAGCCGGAGG
AATCTGCCCCTGCTGACCCGTGCTTCGGCCCAGGAGATCGAAAAGCGCAT
GGTTGCCGAGGGTCACACCGTGGCATCTCTTACCGGTGGCATTGAGGGTT
CGCAGCGTGATGCAGTCATTGACCAATTCCGTGCCGGACACGCGAAGGTC
TTGATTACGACCAACGTGCTTGCCCGAGGTATTGATGTCTCGACTGTGTC
CATGGTTATCAACTACGTAAGCAATGCCCTTTCGATGATCGTTGCGGGTT
GATTTGTTGCCTAGGGATATCCAGGTCGTCCTCTTTTCCGCTACCTTCCC
TGCTCACGTCCACGAATATGCGTCCAAGTTCGCTCCTCAGGCCAACGAGA
TTACCCTCCAGCACGAGGAGTTGACCGTCGAGGGTATCAAGCAGCTGTAC
CTGGACTGCTCGAATGACGAGGACAAGTACCAGACCCTTGTCAATCTCTA
CGGTCTGCTCACCGTCGGCTCGTCCATCATCTTCGTTAAGGGACCCCCGT
ATCCTCCAGGGATTGTCGGCAATGAACTTCCGGAAACCCTCCAAGATCCA
AGAGAGAGCCCTCCCGCTGCTACTTGGCAACCCCGCCAAGAATCTGGTCG
GTCAGTCTCAGTCCGGTACTGGAAAGACTGCGGCCTTCGTCCTGAACATC
CTCAGTCGATTGGACCTCTCGTCGGAGCAGTTGCAAAAGACCCCCCAGGC
GTTGATCCTGGCCCCCACACGAGAGCTGGCTCGTCAGATTGTTGGTGTCA
TTCAAGTTATGGGCCAGTTCCTTGATGGGCTCGTTATTGGTACCGCTGTG
CCGGCAGATACCGGCGCACGCCCGGCCAAGATGGAGTGCTCCGTCGTTGT
GGGTACTCCTGGTACTGTTATGGACATGATTAAGAGGCGCATCATGATTG
CGAACAAGCTCCGCGTGCTTGTTCTCGACGAAGCCGACAACATGCTGGAC
CAGCAAGGTCTGGGTGACCAGTGTATCCGTGTGAAGGCAAGCTCCCGAAC
AGACCGAAGACATCCCTCAGACCGATGGTGCCGCCGCTCAGCAGGGTGGC
TCCGATCTCCATGAGCCTGACTACACCGTTGAAGTCAAGCTCAGCGATCT
CCAGGCCGACCCGAATAACCCCCTTTTCTCCGTAAAGAACTTTGAAGATC
TCGGCCTATGGCGTCTGAACAACCTGAGGCCGGTTCTCTTGCGGACCGCA
TCACCAAGCCGGAGGAATCTGCCCCTGCTGACCCGTGCTTCGGCCCAGGA
GATCGAAAAGCGCATGGTTGCCGAGGGTCACACCGTGGCATCTCTTACCG
GTGGCATTGAGGGTTCGCAGCGTGATGCAGTCATTGACCAATTCCGTGCC
GGACACGCGAAGGTCTTGATTACGACCAACGTGCTTGCCCGAGGTATTGA
TGTCTCGACTGTGTCCATGGTTATCAACTACGTAAGCAATGCCCTTTCGA
TGATCGTTGCGGGTTGATTTGTTGCCTAGGGATATCCAGGTCGTCCTCTT
TTCCGCTACCTTCCCTGCTCACGTCCACGAATATGCGTCCAAGTTCGCTC
CTCAGGCCAACGAGATTACCCTCCAGCACGAGGAGTTGACCGTCGAGGGT
ATCAAGCAGCTGTACCTGGACTGCTCGAATGACGAGGACAAGTACCAGAC
CCTTGTCAATCTCTACGGTCTGCTCACCGTCGGCTCGTCCATCATCTTCG
TTAAGGGACCCCCGTATCCTCCAGGGATTGTCGGCAATGAACTTCCGGAA
ACCCTCCAAGATCCAAGAGAGAGCCCTCCCGCTGCTACTTGGCAACCCCG
CCAAGAATCTGGTCGGTCAGTCTCAGTCCGGTACTGGAAAGACTGCGGCC
TTCGTCCTGAACATCCTCAGTCGATTGGACCTCTCGTCGGAGCAGTTGCA
AAAGACCCCCCAGGCGTTGATCCTGGCCCCCACACGAGAGCTGGCTCGTC
AGATTGTTGGTGTCATTCAAGTTATGGGCCAGTTCCTTGATGGGCTCGTT
ATTGGTACCGCTGTGCCGGCAGATACCGGCGCACGCCCGGCCAAGATGGA
GTGCTCCGTCGTTGTGGGTACTCCTGGTACTGTTATGGACATGATTAAGA
GGCGCATCATGATTGCGAACAAGCTCCGCGTGCTTGTTCTCGACGAAGCC
GACAACATGCTGGACCAGCAAGGTCTGGGTGACCAGTGTATCCGTGTGAA
GGCAAGCTCCCGAACAGACCGAAGACATCCCTCAGACCGATGGTGCCGCC
GCTCAGCAGGGTGGCTCCGATCTCCATGAGCCTGACTACACCGTTGAAGT
CAAGCTCAGCGATCTCCAGGCCGACCCGAATAACCCCCTTTTCTCCGTAA
AGAACTTTGAAGATCTCGGCCTATGGCGTCTGAACAACCTGAGGCCGGTT
CTCTTGCGGACCGCATCACCAAGCCGGAGGAATCTGCCCCTGCTGACCCG
TGCTTCGGCCCAGGAGATCGAAAAGCGCATGGTTGCCGAGGGTCACACCG
TGGCATCTCTTACCGGTGGCATTGAGGGTTCGCAGCGTGATGCAGTCATT
GACCAATTCCGTGCCGGACACGCGAAGGTCTTGATTACGACCAACGTGCT
TGCCCGAGGTATTGATGTCTCGACTGTGTCCATGGTTATCAACTACGTAA
GCAATGCCCTTTCGATGATCGTTGCGGGTTGATTTGTTGCCTAGGGATAT
CCAGGTCGTCCTCTTTTCCGCTACCTTCCCTGCTCACGTCCACGAATATG
CGTCCAAGTTCGCTCCTCAGGCCAACGAGATTACCCTCCAGCACGAGGAG
TTGACCGTCGAGGGTATCAAGCAGCTGTACCTGGACTGCTCGAATGACGA
GGACAAGTACCAGACCCTTGTCAATCTCTACGGTCTGCTCACCGTCGGCT
CGTCCATCATCTTCGTTAAGGGACCCCCGTATCCTCCAGGGATTGTCGGC
AATGAACTTCCGGAAACCCTCCAAGATCCAAGAGAGAGCCCTCCCGCTGC
TACTTGGCAACCCCGCCAAGAATCTGGTCGGTCAGTCTCAGTCCGGTACT
GGAAAGACTGCGGCCTTCGTCCTGAACATCCTCAGTCGATTGGACCTCTC
GTCGGAGCAGTTGCAAAAGACCCCCCAGGCGTTGATCCTGGCCCCCACAC
GAGAGCTGGCTCGTCAGATTGTTGGTGTCATTCAAGTTATGGGCCAGTTC
CTTGATGGGCTCGTTATTGGTACCGCTGTGCCGGCAGATACCGGCGCACG
CCCGGCCAAGATGGAGTGCTCCGTCGTTGTGGGTACTCCTGGTACTGTTA
TGGACATGATTAAGAGGCGCATCATGATTGCGAACAAGCTCCGCGTGCTT
GTTCTCGACGAAGCCGACAACATGCTGGACCAGCAAGGTCTGGGTGACCA
GTGTATCCGTGTGAAGGCAAGCTCCCGAACAGACCGAAGACATCCCTCAG
ACCGATGGTGCCGCCGCTCAGCAGGGTGGCTCCGATCTCCATGAGCCTGA
CTACACCGTTGAAGTCAAGCTCAGCGATCTCCAGGCCGACCCGAATAACC
CCCTTTTCTCCGTAAAGAACTTTGAAGATCTCGGCCTATGGCGTCTGAAC
AACCTGAGGCCGGTTCTCTTGCGGACCGCATCACCAAGCCGGAGGAATCT
GCCCCTGCTGACCCGTGCTTCGGCCCAGGAGATCGAAAAGCGCATGGTTG
CCGAGGGTCACACCGTGGCATCTCTTACCGGTGGCATTGAGGGTTCGCAG
CGTGATGCAGTCATTGACCAATTCCGTGCCGGACACGCGAAGGTCTTGAT
TACGACCAACGTGCTTGCCCGAGGTATTGATGTCTCGACTGTGTCCATGG
TTATCAACTACGTAAGCAATGCCCTTTCGATGATCGTTGCGGGTTGATTT
GTTGCCTAGGGATATCCAGGTCGTCCTCTTTTCCGCTACCTTCCCTGCTC
ACGTCCACGAATATGCGTCCAAGTTCGCTCCTCAGGCCAACGAGATTACC
CTCCAGCACGAGGAGTTGACCGTCGAGGGTATCAAGCAGCTGTACCTGGA
CTGCTCGAATGACGAGGACAAGTACCAGACCCTTGTCAATCTCTACGGTC
TGCTCACCGTCGGCTCGTCCATCATCTTCGTTAAGGGACCCCCGTATCCT
CCAGGGATTGTCGGCAATGAACTTCCGGAAACCCTCCAAGATCCAAGAGA
GAGCCCTCCCGCTGCTACTTGGCAACCCCGCCAAGAATCTGGTCGGTCAG
TCTCAGTCCGGTACTGGAAAGACTGCGGCCTTCGTCCTGAACATCCTCAG
TCGATTGGACCTCTCGTCGGAGCAGTTGCAAAAGACCCCCCAGGCGTTGA
TCCTGGCCCCCACACGAGAGCTGGCTCGTCAGATTGTTGGTGTCATTCAA
GTTATGGGCCAGTTCCTTGATGGGCTCGTTATTGGTACCGCTGTGCCGGC
AGATACCGGCGCACGCCCGGCCAAGATGGAGTGCTCCGTCGTTGTGGGTA
CTCCTGGTACTGTTATGGACATGATTAAGAGGCGCATCATGATTGCGAAC
AAGCTCCGCGTGCTTGTTCTCGACGAAGCCGACAACATGCTGGACCAGCA
AGGTCTGGGTGACCAGTGTATCCGTGTGAAGGCAAGCTCCCGAACAGACC
GAAGACATCCCTCAGACCGATGGTGCCGCCGCTCAGCAGGGTGGCTCCGA
TCTCCATGAGCCTGACTACACCGTTGAAGTCAAGCTCAGCGATCTCCAGG
CCGACCCGAATAACCCCCTTTTCTCCGTAAAGAACTTTGAAGATCTCGGC
CTATGGCGTCTGAACAACCTGAGGCCGGTTCTCTTGCGGACCGCATCACC
AAGCCGGAGGAATCTGCCCCTGCTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006676-T1.utr3p1 | KJC3_006676-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006676-T1.utr5p1 | KJC3_006676-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR014001 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF00270 |
| Product | RNA helicase required for poly(A ) mRNA export |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:61113..62897 - |
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