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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:180864..182805+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006713-T1 ID=KJC3_006713-T1|Name=KJC3_006713-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1942bp|location=Sequence derived from alignment at ch5:180864..182805+ (Aspergillus niger KJC3)
AGTCAATCTATTTTGCGTCATCTCGTCCGAGGGGATCGTCAGGGAACCGG
GTAAGGCAATGATCCTCATACTAATGGGATCGCAGGCCGCGTATCCCTCG
GCGCAAATATCCGTGAAGATGCATGGCACCCGTGGGAGCACCGTTAGGGG
GTCCATTCTCCGACGCATTGCGGCATCTATTAAAGTGCTGTCTCTCCCCA
AGCATCTCGAATCATTACCTTACCATCGTGACCATCCCATTGATCCCACA
TTAGCGTTCAACCACACGATGGATCAGTCACGCCGTGCGAGACTCGCTCT
CGCCACGCTTATTCCTCTCCTGACCGGGGCCAATGCAGCGCTCTATGACA
CTGTCATCGACACGCAGTATGGTGGTGTTCAAGGCTACCCAGCCTTCACC
AGCGAGCCGGCCGGTAACCTAACCCATTGGAAAGACATTACCGTCTGGAA
GAACATCCCCTTTGCCGCCACCACCGGGGGTCAAAACCGCTGGAAGGCAC
CCCAGCCCGTCAGCGCTTGGAACGGCACCCGTGATGCGAAGTCTTTCGGA
AACGTATGCCCGTCGGCCACCCAGGGCAGCTCCGAATATACCATCGACGA
AGACTGCTTGAACCTCAACATATGGAGTCCCGCCAACTCGACGGACGCAA
AGCTCCCGGTTGTCATGTGGAGCTATCCCGCTCTGTCGACGGCTGCGGAT
GCCCTCTTCGATGGTGGCGGCATGGCTGACCAGGGTATCGTTTTTGTGAA
CTACAACTACCGCACAGGCTCATTCGGCTGGATGGCGCACCCGGAGTTGT
CGGAGGAGTTCTACAAGGTGACCGGATCCAACAGCTCCGGCAACTGGGGC
ATGCTCGACCAATTTGCAGCGCTCAAGTGGATCCATGAGAACATCGCCGC
GTTTGGCGGTGATCCCGAACACATCACGGTTATGGGCCAGTCTGCTGGGT
CGGCTGCCACCCAGCACATCCTCAACAGCCCATTGACCAAGGGCCTGATC
GTCGGCGCCATCATCGAAAGTGGAGTTCGGGATCCGCACGATCCCCTCTG
CACCAGTCTGGCGGAAGGCTACAGCACATTGGAGGACCAGCTGGCCCAGG
GAGAACGCTTCATGGCCAGCTTGAACTGCAGCTCCATCGCCGAGATGCGC
GAACTGCCCATGGAGGATCTCGTCGTGTCGGGCGGAACATTCGGCAGCAC
CAGCGAATGGAGCTTCGGGGCCACTTTGGACTACTACGCAATGCCGGACA
CCTACTACAACACGCTCATCAAGGGTCTGGCGCAGGACGTGCCTGTCATT
ACGGGCAACACCAAGGACGAAAGTGGGGCCAGCTACGGCCTGAACCTCAC
CGTGTCCGAGTACCTGGCAGACATGAACGAGACGTTCAGCGAGCCATGGC
TCTCTCGCTTTCTGGAGCTGTATCCCGGAAACACCACACGAACCGCCCCG
GGAGCCTACAACTCCCAGTGGACCGACCGGTCCAAAGTGGGCACTTGGCT
GTGGGCACAGCTCTGGGCGACCGCGAGGACCAGTCCTGTGTATACCTACT
TCTGGGACCACGCTCCCCCAGGCCAGGACCAGGGCGCGTACCACGAATCC
GAGATTAACTATGTTCTGAACAACCTGTACGGCACGGACCTGCCATGGAC
GGCGGCCGACTACTCCATCGCACGGAAGATGAACGGATACTGGGCCAACT
TCATCAAGACGGGCAATCCCAATGGAGGATCCCTGACCCAGTGGCCTGCC
ACGGGAGAGAACGCGAAGGTGCAGCATGTGGGTGATGGATGGGGAGAGAT
TCCGACCGCATCTGATGCCAAGGTGAAGCTGTTTGAGGAGTGGTTCGACA
CACTGAAGACTTACTAAGGGCGCATGGACATCCGCTTGTACATAGCCGTC
TGTAATTAACCACGCTTGATGTACATCCTCTGTATGATAGCA back to topCoding sequence (CDS) from alignment at ch5:180864..182805+ >KJC3_006713-T1 ID=KJC3_006713-T1|Name=KJC3_006713-T1|organism=Aspergillus niger KJC3|type=CDS|length=1809bp|location=Sequence derived from alignment at ch5:180864..182805+ (Aspergillus niger KJC3)
ATGATCCTCATACTAATGGGATCGCAGGCCGCGTATCCCTCGGCGCAAAT
ATCCGTGAAGATGCATGGCACCCGTGGGAGCACCGTTAGGGGGTCCATTC
TCCGACGCATTGCGGCATCTATTAAAGTGCTGTCTCTCCCCAAGCATCTC
GAATCATTACCTTACCATCGTGACCATCCCATTGATCCCACATTAGCGTT
CAACCACACGATGGATCAGTCACGCCGTGCGAGACTCGCTCTCGCCACGC
TTATTCCTCTCCTGACCGGGGCCAATGCAGCGCTCTATGACACTGTCATC
GACACGCAGTATGGTGGTGTTCAAGGCTACCCAGCCTTCACCAGCGAGCC
GGCCGGTAACCTAACCCATTGGAAAGACATTACCGTCTGGAAGAACATCC
CCTTTGCCGCCACCACCGGGGGTCAAAACCGCTGGAAGGCACCCCAGCCC
GTCAGCGCTTGGAACGGCACCCGTGATGCGAAGTCTTTCGGAAACGTATG
CCCGTCGGCCACCCAGGGCAGCTCCGAATATACCATCGACGAAGACTGCT
TGAACCTCAACATATGGAGTCCCGCCAACTCGACGGACGCAAAGCTCCCG
GTTGTCATGTGGAGCTATCCCGCTCTGTCGACGGCTGCGGATGCCCTCTT
CGATGGTGGCGGCATGGCTGACCAGGGTATCGTTTTTGTGAACTACAACT
ACCGCACAGGCTCATTCGGCTGGATGGCGCACCCGGAGTTGTCGGAGGAG
TTCTACAAGGTGACCGGATCCAACAGCTCCGGCAACTGGGGCATGCTCGA
CCAATTTGCAGCGCTCAAGTGGATCCATGAGAACATCGCCGCGTTTGGCG
GTGATCCCGAACACATCACGGTTATGGGCCAGTCTGCTGGGTCGGCTGCC
ACCCAGCACATCCTCAACAGCCCATTGACCAAGGGCCTGATCGTCGGCGC
CATCATCGAAAGTGGAGTTCGGGATCCGCACGATCCCCTCTGCACCAGTC
TGGCGGAAGGCTACAGCACATTGGAGGACCAGCTGGCCCAGGGAGAACGC
TTCATGGCCAGCTTGAACTGCAGCTCCATCGCCGAGATGCGCGAACTGCC
CATGGAGGATCTCGTCGTGTCGGGCGGAACATTCGGCAGCACCAGCGAAT
GGAGCTTCGGGGCCACTTTGGACTACTACGCAATGCCGGACACCTACTAC
AACACGCTCATCAAGGGTCTGGCGCAGGACGTGCCTGTCATTACGGGCAA
CACCAAGGACGAAAGTGGGGCCAGCTACGGCCTGAACCTCACCGTGTCCG
AGTACCTGGCAGACATGAACGAGACGTTCAGCGAGCCATGGCTCTCTCGC
TTTCTGGAGCTGTATCCCGGAAACACCACACGAACCGCCCCGGGAGCCTA
CAACTCCCAGTGGACCGACCGGTCCAAAGTGGGCACTTGGCTGTGGGCAC
AGCTCTGGGCGACCGCGAGGACCAGTCCTGTGTATACCTACTTCTGGGAC
CACGCTCCCCCAGGCCAGGACCAGGGCGCGTACCACGAATCCGAGATTAA
CTATGTTCTGAACAACCTGTACGGCACGGACCTGCCATGGACGGCGGCCG
ACTACTCCATCGCACGGAAGATGAACGGATACTGGGCCAACTTCATCAAG
ACGGGCAATCCCAATGGAGGATCCCTGACCCAGTGGCCTGCCACGGGAGA
GAACGCGAAGGTGCAGCATGTGGGTGATGGATGGGGAGAGATTCCGACCG
CATCTGATGCCAAGGTGAAGCTGTTTGAGGAGTGGTTCGACACACTGAAG
ACTTACTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006713-T1.utr5p1 | KJC3_006713-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006713-T1.utr3p1 | KJC3_006713-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | MEROPS:MER0030934 |
| DBxref | InterPro:IPR019826 |
| DBxref | InterPro:IPR029058 |
| DBxref | InterPro:IPR002018 |
| DBxref | PFAM:PF00135 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:180864..182805 + |
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