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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:212015..213536+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006726-T1 ID=KJC3_006726-T1|Name=KJC3_006726-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1522bp|location=Sequence derived from alignment at ch5:212015..213536+ (Aspergillus niger KJC3)
GAGAAACCTCCGATATAACCAACTAGTGAACATATAACATTCTATATCCC
CGACTCTTCATCTGAAAACATAGCATCCATCACCTTCGTCCGTGGCCAAT
ATCCCCATGGCCCATAATCTTTCCATCGCTGGCGTGCAGCTTGAGCTCTC
CCAGGCCACCGCAGGATTCGAATACTACGACAGTCGATTCCTCAACATCA
CGGGCAATGCCCCAAAACTTGAAGTTCTTCTAGAGAACAATGACTTCCCA
TTCGCTCACGAAGCAAGTGTCTTCATCCCATCCACAGACGAACTATTCAT
GAGCAGCAACATCTTCACCGATCCCCTCACCAATCAGTCAACAATCGAGA
TCTCTAAAGTGTCCCTCAGCACCAACCCAGTTACATCAGAAATAATCAAC
ACCACCATTCCTCTGCCCAATGGAGGCATCAACCACGACTCCGGCATTCT
CTTCTGCGGTCAGGGTACACTCAACAAATCCGGAGGTCTTTTCCAAATGT
CTATTGACCCGCCATATGAATCTAAGCTCCTGATCAGTGGTTTCTACGGT
CGGGAATTCAATTCCCTAAATGATGTGGTTGTTCACAGCGACGGCTCCAT
CTGGTTCACAGATCCTACGTACGGATACGAACAGGGCATCCGGCCTGCGC
CGCAATTGCCGAACCAAGTCTATCGTTATGATCCGAGTACCGGGGATGTG
CGTGTCATCGCGGATGGGTTTGGTCGCCCGAATGGCATCGCTTTTTCTCC
GGATGAGAAAGTAGTGTATATTACTGATACGGCGTATACGGTTGGTGATG
GAACGACGGATCCGACTAAGCCTTCCACTATGTATGTTCTTTTCTTTCCT
TTCCTGATAGTTCCTTCTCCACTCTTCCAAATACTCGAAAGCATGGTATA
CTATTTTACGTTTATAGTTTGGCTGATATGGAACCATCCAGCTATGCATT
CGACATCACCAACTACCACGGCCAACCATTCCTGACGAACCGTCGCGTTT
TCGCGATGGTGGCTAACGGTATCCCGGATGGGATCAAGACCGATATGGAA
GGCAATGTGTACGCTGGCTGCGGGGACGGTGTCAATGTCTGGTCGCCCGG
TGGTGTCTTGTTAGGGAAGATTTACATCAAGAGCGGCGTGGCTAATTTTT
CATTTGGCCGCAATGGGCAAATGTTTATTATGAACGAGAATAAACTGTTG
TCTGCACAGCTTGGCCATTGGGTAAGGGGATCGCTCTTGAAAATTTGAAA
TTCTGAAGTATTCGGCCTTGATATGGGGTTTTTATGCTGAGGTTGGGGTG
CATACACGATGATGCTTATCTGTTAGTCCGGAAAGAATCCTAACGATTGT
ATATCGAAGTGGGGTTTGCCCTGAAGTTGATCAGTCATGAAGCATCACAC
GTTCCTTTCATTATAGTATCTGGATACCGAAGTCGATGTACATATTGCAA
ACAAGAGGCCGTAGCGAGGAAAGGAGCATCGTCTTCGACAGTAGTGGCAG
TCACATAGAATATGTTGTGGAA back to topCoding sequence (CDS) from alignment at ch5:212015..213536+ >KJC3_006726-T1 ID=KJC3_006726-T1|Name=KJC3_006726-T1|organism=Aspergillus niger KJC3|type=CDS|length=2064bp|location=Sequence derived from alignment at ch5:212015..213536+ (Aspergillus niger KJC3)
ATGGCCCATAATCTTTCCATCGCTGGCGTGCAGCTTGAGCTCTCCCAGGC
CACCGCAGGATTCGAATACTACGACAGTCGATTCCTCAACATCACGGGCA
ATGCCCCAAAACTTGAAGTTCTTCTAGAGAACAATGACTTCCCATTCGCT
CACGAAGCAAGTGTCTTCATCCCATCCACAGACGAACTATTCATGAGCAG
CAACATCTTCACCGATCCCCTCACCAATCAGTCAACAATCGAGATCTCTA
AAGTGTCCCTCAGCACCAACCCAGTTACATCAGAAATAATCAACACCACC
ATTCCTCTGCCCAATGGAGGCATCAACCACGACTCCGGCATTCTCTTCTG
CGGTCAGGGTACACTCAACAAATCCGGAGGTCTTTTCCAAATGTCTATTG
ACCCGCCATATGAATCTAAGCTCCTGATCAGTGGTTTCTACGGTCGGGAA
TTCAATTCCCTAAATGATGTGGTTGTTCACAGCGACGGCTCCATCTGGTT
CACAGATCCTACGTACGGATACGAACAGGGCATCCGGCCTGCGCCGCAAT
TGCCGAACCAAGTCTATCGTTATGATCCGAGTACCGGGGATGTGCGTGTC
ATCGCGGATGGGTTTGGTCGCCCGAATGGCATCGCTTTTTCTCCGGATGA
GAAAGTAGTGTATATTACTGATACGGCGTATACGGTTGGTGATGGAACGA
CGGATCCGACTAAGCCTTCCACTATCTATGCATTCGACATCACCAACTAC
CACGGCCAACCATTCCTGACGAACCGTCGCGTTTTCGCGATGGTGGCTAA
CGGTATCCCGGATGGGATCAAGACCGATATGGAAGGCAATGTGTACGCTG
GCTGCGGGGACGGTGTCAATGTCTGGTCGCCCGGTGGTGTCTTGTTAGGG
AAGATTTACATCAAGAGCGGCGTGGCTAATTTTTCATTTGGCCGCAATGG
GCAAATGTTTATTATGAACGAGAATAAACTGTTGTCTGCACAGCTTGGCC
ATTGGGTAAGGGGATCGCTCTTGAAAATTTGAATGGCCCATAATCTTTCC
ATCGCTGGCGTGCAGCTTGAGCTCTCCCAGGCCACCGCAGGATTCGAATA
CTACGACAGTCGATTCCTCAACATCACGGGCAATGCCCCAAAACTTGAAG
TTCTTCTAGAGAACAATGACTTCCCATTCGCTCACGAAGCAAGTGTCTTC
ATCCCATCCACAGACGAACTATTCATGAGCAGCAACATCTTCACCGATCC
CCTCACCAATCAGTCAACAATCGAGATCTCTAAAGTGTCCCTCAGCACCA
ACCCAGTTACATCAGAAATAATCAACACCACCATTCCTCTGCCCAATGGA
GGCATCAACCACGACTCCGGCATTCTCTTCTGCGGTCAGGGTACACTCAA
CAAATCCGGAGGTCTTTTCCAAATGTCTATTGACCCGCCATATGAATCTA
AGCTCCTGATCAGTGGTTTCTACGGTCGGGAATTCAATTCCCTAAATGAT
GTGGTTGTTCACAGCGACGGCTCCATCTGGTTCACAGATCCTACGTACGG
ATACGAACAGGGCATCCGGCCTGCGCCGCAATTGCCGAACCAAGTCTATC
GTTATGATCCGAGTACCGGGGATGTGCGTGTCATCGCGGATGGGTTTGGT
CGCCCGAATGGCATCGCTTTTTCTCCGGATGAGAAAGTAGTGTATATTAC
TGATACGGCGTATACGGTTGGTGATGGAACGACGGATCCGACTAAGCCTT
CCACTATCTATGCATTCGACATCACCAACTACCACGGCCAACCATTCCTG
ACGAACCGTCGCGTTTTCGCGATGGTGGCTAACGGTATCCCGGATGGGAT
CAAGACCGATATGGAAGGCAATGTGTACGCTGGCTGCGGGGACGGTGTCA
ATGTCTGGTCGCCCGGTGGTGTCTTGTTAGGGAAGATTTACATCAAGAGC
GGCGTGGCTAATTTTTCATTTGGCCGCAATGGGCAAATGTTTATTATGAA
CGAGAATAAACTGTTGTCTGCACAGCTTGGCCATTGGGTAAGGGGATCGC
TCTTGAAAATTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006726-T1.utr5p1 | KJC3_006726-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006726-T1.utr3p1 | KJC3_006726-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013658 |
| DBxref | InterPro:IPR011042 |
| DBxref | PFAM:PF03088 |
| DBxref | PFAM:PF08450 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:212015..213536 + |
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