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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:313934..316103- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006748-T3 ID=KJC3_006748-T3|Name=KJC3_006748-T3|organism=Aspergillus niger KJC3|type=mRNA|length=2170bp|location=Sequence derived from alignment at ch5:313934..316103- (Aspergillus niger KJC3)
CTTTTGGTGTCATTTTTCCTTTTCTCTATTTTCGTTTTCATCTCCACTCC
TTTCTTGTCAAAGCGCCATGCTTGCTTTTCTATACCAAACTACTGGTTGC
GTTCCTGTGCGTGCTGCTCCCTGGTTGCATTACCAAGCGTCCAGCATATA
TTTGCAAATGATGGCTACGCCGCTTGTCGTTATCCAATCTATGTATCCGG
TGTGGCGTGATGTGTCAGGTCTTAACTTTTTGTATTTGGAATTTTGCAGT
CATTATTGACGATTTGACGATTGAAATCGGAAAAACGTCCAGCAGATGCA
GCTTACTGACCAGGACCCGTCCTTCCAGTATTTCGCAGTATCCTACATCC
ATTCCCATGAGCGGTACTCACACGTGCTCTGGTTCGTCTCCCACCCTTAC
TCTCCTCCCCATTATGTCATTTTGGCTAACATGCGCCCTTCATCTACTAT
GGTGAGGGTGAAATGCAGAAAAATGCTCCCCGATGTCGAACTCACTCCAC
ACGTATTCGGCAAGAATGCTGTATGATAGAATGTCGAACACCATATCCCA
TCCGGTATCCTCACTGTGAGTTTTTCTCTACTGTTCATCCACCGTTGCAT
GTGCCGATTACTAAGAAACTCAGGGATCTATACAGCCCACCGTCCGCCAC
AATGTCACTCAGCCTGAAGTCCCAGAAAATTGTCACCCCTGGCAGTGCGT
CCACCATGGGAAGAAGTGATTGGTTTCCAGAAGCTTACAATATCCATCAA
CAATTATCCTTAACACCTTCCTCCGATATGGAGAAGATAACAAGAACTGC
ACCCTTTGCAACAGCACATAGAGCTCCGAAGAACTCTACTGCGCGATCTC
AGGCTGTGTATCTCGGTTCAGAGAATATGTTAATGGGCCAAGCTCAGGGG
CGGTTGCCAGAGCCATTTGCTGGCTCTCCTCCGTTCTACGATACTATATT
GCTTCTACCTGTCGTTTGCGGGACTTCGTTCCTGAAGCCTGAGATACTTG
CCGAGATACATAAAGGTTTCTTCCAGGTTGATGATAAGTGGACGTGCTAT
AGGCGAAACTACTTTTCAATTTCGTGTTCGTTTACTTTGCAACCTTGGTC
AAGCGCTCCGTTATACGTGAAAGTTTCAGATCAGTGGACAGAACGTATTA
CAAGGTTTGCCATGTCAATCTCCGCCATTGTGAATCAACAGGTCGCAGAA
ATCCGCGACTTGGTTCAATACAGCCCAAAACGGGATAAGCAGTCGGGCAG
AAAACCAGGAAGGGTTGTATTGCAGCCCTGTCAGCCTGAGCACTTGGCTG
TTGGCCATGAAGCGTCGTCAAACAGCATTCAGCATGGCTTATCAATAGGT
TATCAGTCTACTGAGAGGCCCCTAGGTTACGAGGAGTATCCGGGAGTAGC
CCAGCCTTCACAACCCCCATACCGGCACACGTTTGAGCGGGTTCAGTTCC
AGAAGGCGACCGCGAACAACAGAATGCGGCGAGCCCAGCAGCAGTACTAC
AACGTAGTCGTTGAACTCTATGCTGAGGTCGCCAGCTCTGCTCAGGGAAC
TGAAAGCCAGTGGTTTCGAGTTGCCAGGCGACTTTCGCATCCAATGGTAG
TCCGGGGTCGCTCTCCAAACCACTTCAAAAACAACCGCCGCAACAATCCG
GCAAGAATGGATTTTTCAGAAGGAATAAAAAAGAAGCACGAAGACCAGCA
TAGTACATGACCACAACGGGTCACGTGCACGAGGCAAATCCAAAGCAGAT
ATACTGTGTAGTGTCAGTACTGTACAACATCCAGGCCGTTTTGAGTTCCA
CCTCATATGAGCAAGTCCTACTTGGAAAAGTGCGACGGATTGAGCTATAT
CTCTTGCTAACGCTATGTGACATCGACACGGGCGGCAGCGGGCAAATAGA
GGGGGGGGGGCAAGTCTTGGACAATGCCCCGAGGGCCTGAGAAATGAGAG
GTATTCTGGGTGTTCCCATATCCTCACGCACTTTCCATGTTCCTACTATA
TTCTGCTTAGCTAGTCGTTGCCCCTTTCTTTGCCACTAAACGGATTGCAT
TTCTGTTGATCGTGATCGATGTATGAACAACTCCCCAACTATGGGTCCGG
CAATTTTAGTGTTTAATTGCGGTTCCTCGCAGCGCACCGAAATTGATCTC
AACACCAAGCGATCATGAAT back to topCoding sequence (CDS) from alignment at ch5:313934..316103- >KJC3_006748-T3 ID=KJC3_006748-T3|Name=KJC3_006748-T3|organism=Aspergillus niger KJC3|type=CDS|length=5604bp|location=Sequence derived from alignment at ch5:313934..316103- (Aspergillus niger KJC3)
GGATCTATACAGCCCACCGTCCGCCACAATGTCACTCAGCCTGAAGTCCC
AGAAAATTGTCACCCCTGGCAGTGCGTCCACCATGGGAAGAAGTGATTGG
TTTCCAGAAGCTTACAATATCCATCAACAATTATCCTTAACACCTTCCTC
CGATATGGAGAAGATAACAAGAACTGCACCCTTTGCAACAGCACATAGAG
CTCCGAAGAACTCTACTGCGCGATCTCAGGCTGTGTATCTCGGTTCAGAG
AATATGTTAATGGGCCAAGCTCAGGGGCGGTTGCCAGAGCCATTTGCTGG
CTCTCCTCCGTTCTACGATACTATATTGCTTCTACCTGTCGTTTGCGGGA
CTTCGTTCCTGAAGCCTGAGATACTTGCCGAGATACATAAAGGTTTCTTC
CAGGTTGATGATAAGTGGACGTGCTATAGGCGAAACTACTTTTCAATTTC
GTGTTCGTTTACTTTGCAACCTTGGTCAAGCGCTCCGTTATACGTGAAAG
TTTCAGATCAGTGGACAGAACGTATTACAAGGTTTGCCATGTCAATCTCC
GCCATTGTGAATCAACAGGTCGCAGAAATCCGCGACTTGGTTCAATACAG
CCCAAAACGGGATAAGCAGTCGGGCAGAAAACCAGGAAGGGTTGTATTGC
AGCCCTGTCAGCCTGAGCACTTGGCTGTTGGCCATGAAGCGTCGTCAAAC
AGCATTCAGCATGGCTTATCAATAGGTTATCAGTCTACTGAGAGGCCCCT
AGGTTACGAGGAGTATCCGGGAGTAGCCCAGCCTTCACAACCCCCATACC
GGCACACGTTTGAGCGGGTTCAGTTCCAGAAGGCGACCGCGAACAACAGA
ATGCGGCGAGCCCAGCAGCAGTACTACAACGTAGTCGTTGAACTCTATGC
TGAGGTCGCCAGCTCTGCTCAGGGAACTGAAAGCCAGTGGTTTCGAGTTG
CCAGGCGACTTTCGCATCCAATGGTAGTCCGGGGTCGCTCTCCAAACCAC
TTCAAAAACAACCGCCGCAACAATCCGGCAAGAATGGATTTTTCAGAAGG
AATAAAAAAGAAGCACGAAGACCAGCATAGTACATGAAAAAATGCTCCCC
GATGTCGAACTCACTCCACACGTATTCGGCAAGAATGCTGTATGATAGAA
TGTCGAACACCATATCCCATCCGGTATCCTCACTTATTTCGCAGTATCCT
ACATCCATTCCCATGAGCGGTACTCACACGTGCTCTGATGCTTGCTTTTC
TATACCAAACTACTGGTTGCGTTCCTGTGCGTGCTGCTCCCTGGTTGCAT
TACCAAGCGTCCAGCATATATTTGCAAATGATGGCTACGCCGCTTGTCGT
TATCCAATCTATGTATCCGGTGTGGCGTGATGTGTCAGGTCTTAACTTTT
TGGATCTATACAGCCCACCGTCCGCCACAATGTCACTCAGCCTGAAGTCC
CAGAAAATTGTCACCCCTGGCAGTGCGTCCACCATGGGAAGAAGTGATTG
GTTTCCAGAAGCTTACAATATCCATCAACAATTATCCTTAACACCTTCCT
CCGATATGGAGAAGATAACAAGAACTGCACCCTTTGCAACAGCACATAGA
GCTCCGAAGAACTCTACTGCGCGATCTCAGGCTGTGTATCTCGGTTCAGA
GAATATGTTAATGGGCCAAGCTCAGGGGCGGTTGCCAGAGCCATTTGCTG
GCTCTCCTCCGTTCTACGATACTATATTGCTTCTACCTGTCGTTTGCGGG
ACTTCGTTCCTGAAGCCTGAGATACTTGCCGAGATACATAAAGGTTTCTT
CCAGGTTGATGATAAGTGGACGTGCTATAGGCGAAACTACTTTTCAATTT
CGTGTTCGTTTACTTTGCAACCTTGGTCAAGCGCTCCGTTATACGTGAAA
GTTTCAGATCAGTGGACAGAACGTATTACAAGGTTTGCCATGTCAATCTC
CGCCATTGTGAATCAACAGGTCGCAGAAATCCGCGACTTGGTTCAATACA
GCCCAAAACGGGATAAGCAGTCGGGCAGAAAACCAGGAAGGGTTGTATTG
CAGCCCTGTCAGCCTGAGCACTTGGCTGTTGGCCATGAAGCGTCGTCAAA
CAGCATTCAGCATGGCTTATCAATAGGTTATCAGTCTACTGAGAGGCCCC
TAGGTTACGAGGAGTATCCGGGAGTAGCCCAGCCTTCACAACCCCCATAC
CGGCACACGTTTGAGCGGGTTCAGTTCCAGAAGGCGACCGCGAACAACAG
AATGCGGCGAGCCCAGCAGCAGTACTACAACGTAGTCGTTGAACTCTATG
CTGAGGTCGCCAGCTCTGCTCAGGGAACTGAAAGCCAGTGGTTTCGAGTT
GCCAGGCGACTTTCGCATCCAATGGTAGTCCGGGGTCGCTCTCCAAACCA
CTTCAAAAACAACCGCCGCAACAATCCGGCAAGAATGGATTTTTCAGAAG
GAATAAAAAAGAAGCACGAAGACCAGCATAGTACATGAAAAAATGCTCCC
CGATGTCGAACTCACTCCACACGTATTCGGCAAGAATGCTGTATGATAGA
ATGTCGAACACCATATCCCATCCGGTATCCTCACTTATTTCGCAGTATCC
TACATCCATTCCCATGAGCGGTACTCACACGTGCTCTGATGCTTGCTTTT
CTATACCAAACTACTGGTTGCGTTCCTGTGCGTGCTGCTCCCTGGTTGCA
TTACCAAGCGTCCAGCATATATTTGCAAATGATGGCTACGCCGCTTGTCG
TTATCCAATCTATGTATCCGGTGTGGCGTGATGTGTCAGGTCTTAACTTT
TTGGATCTATACAGCCCACCGTCCGCCACAATGTCACTCAGCCTGAAGTC
CCAGAAAATTGTCACCCCTGGCAGTGCGTCCACCATGGGAAGAAGTGATT
GGTTTCCAGAAGCTTACAATATCCATCAACAATTATCCTTAACACCTTCC
TCCGATATGGAGAAGATAACAAGAACTGCACCCTTTGCAACAGCACATAG
AGCTCCGAAGAACTCTACTGCGCGATCTCAGGCTGTGTATCTCGGTTCAG
AGAATATGTTAATGGGCCAAGCTCAGGGGCGGTTGCCAGAGCCATTTGCT
GGCTCTCCTCCGTTCTACGATACTATATTGCTTCTACCTGTCGTTTGCGG
GACTTCGTTCCTGAAGCCTGAGATACTTGCCGAGATACATAAAGGTTTCT
TCCAGGTTGATGATAAGTGGACGTGCTATAGGCGAAACTACTTTTCAATT
TCGTGTTCGTTTACTTTGCAACCTTGGTCAAGCGCTCCGTTATACGTGAA
AGTTTCAGATCAGTGGACAGAACGTATTACAAGGTTTGCCATGTCAATCT
CCGCCATTGTGAATCAACAGGTCGCAGAAATCCGCGACTTGGTTCAATAC
AGCCCAAAACGGGATAAGCAGTCGGGCAGAAAACCAGGAAGGGTTGTATT
GCAGCCCTGTCAGCCTGAGCACTTGGCTGTTGGCCATGAAGCGTCGTCAA
ACAGCATTCAGCATGGCTTATCAATAGGTTATCAGTCTACTGAGAGGCCC
CTAGGTTACGAGGAGTATCCGGGAGTAGCCCAGCCTTCACAACCCCCATA
CCGGCACACGTTTGAGCGGGTTCAGTTCCAGAAGGCGACCGCGAACAACA
GAATGCGGCGAGCCCAGCAGCAGTACTACAACGTAGTCGTTGAACTCTAT
GCTGAGGTCGCCAGCTCTGCTCAGGGAACTGAAAGCCAGTGGTTTCGAGT
TGCCAGGCGACTTTCGCATCCAATGGTAGTCCGGGGTCGCTCTCCAAACC
ACTTCAAAAACAACCGCCGCAACAATCCGGCAAGAATGGATTTTTCAGAA
GGAATAAAAAAGAAGCACGAAGACCAGCATAGTACATGAAAAAATGCTCC
CCGATGTCGAACTCACTCCACACGTATTCGGCAAGAATGCTGTATGATAG
AATGTCGAACACCATATCCCATCCGGTATCCTCACTTATTTCGCAGTATC
CTACATCCATTCCCATGAGCGGTACTCACACGTGCTCTGATGCTTGCTTT
TCTATACCAAACTACTGGTTGCGTTCCTGTGCGTGCTGCTCCCTGGTTGC
ATTACCAAGCGTCCAGCATATATTTGCAAATGATGGCTACGCCGCTTGTC
GTTATCCAATCTATGTATCCGGTGTGGCGTGATGTGTCAGGTCTTAACTT
TTTGGATCTATACAGCCCACCGTCCGCCACAATGTCACTCAGCCTGAAGT
CCCAGAAAATTGTCACCCCTGGCAGTGCGTCCACCATGGGAAGAAGTGAT
TGGTTTCCAGAAGCTTACAATATCCATCAACAATTATCCTTAACACCTTC
CTCCGATATGGAGAAGATAACAAGAACTGCACCCTTTGCAACAGCACATA
GAGCTCCGAAGAACTCTACTGCGCGATCTCAGGCTGTGTATCTCGGTTCA
GAGAATATGTTAATGGGCCAAGCTCAGGGGCGGTTGCCAGAGCCATTTGC
TGGCTCTCCTCCGTTCTACGATACTATATTGCTTCTACCTGTCGTTTGCG
GGACTTCGTTCCTGAAGCCTGAGATACTTGCCGAGATACATAAAGGTTTC
TTCCAGGTTGATGATAAGTGGACGTGCTATAGGCGAAACTACTTTTCAAT
TTCGTGTTCGTTTACTTTGCAACCTTGGTCAAGCGCTCCGTTATACGTGA
AAGTTTCAGATCAGTGGACAGAACGTATTACAAGGTTTGCCATGTCAATC
TCCGCCATTGTGAATCAACAGGTCGCAGAAATCCGCGACTTGGTTCAATA
CAGCCCAAAACGGGATAAGCAGTCGGGCAGAAAACCAGGAAGGGTTGTAT
TGCAGCCCTGTCAGCCTGAGCACTTGGCTGTTGGCCATGAAGCGTCGTCA
AACAGCATTCAGCATGGCTTATCAATAGGTTATCAGTCTACTGAGAGGCC
CCTAGGTTACGAGGAGTATCCGGGAGTAGCCCAGCCTTCACAACCCCCAT
ACCGGCACACGTTTGAGCGGGTTCAGTTCCAGAAGGCGACCGCGAACAAC
AGAATGCGGCGAGCCCAGCAGCAGTACTACAACGTAGTCGTTGAACTCTA
TGCTGAGGTCGCCAGCTCTGCTCAGGGAACTGAAAGCCAGTGGTTTCGAG
TTGCCAGGCGACTTTCGCATCCAATGGTAGTCCGGGGTCGCTCTCCAAAC
CACTTCAAAAACAACCGCCGCAACAATCCGGCAAGAATGGATTTTTCAGA
AGGAATAAAAAAGAAGCACGAAGACCAGCATAGTACATGAAAAAATGCTC
CCCGATGTCGAACTCACTCCACACGTATTCGGCAAGAATGCTGTATGATA
GAATGTCGAACACCATATCCCATCCGGTATCCTCACTTATTTCGCAGTAT
CCTACATCCATTCCCATGAGCGGTACTCACACGTGCTCTGATGCTTGCTT
TTCTATACCAAACTACTGGTTGCGTTCCTGTGCGTGCTGCTCCCTGGTTG
CATTACCAAGCGTCCAGCATATATTTGCAAATGATGGCTACGCCGCTTGT
CGTTATCCAATCTATGTATCCGGTGTGGCGTGATGTGTCAGGTCTTAACT
TTTT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0003700 | DNA-binding transcription factor activity |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006748-T3.utr3p1 | KJC3_006748-T3.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006748-T3.utr5p1 | KJC3_006748-T3.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008967 |
| DBxref | InterPro:IPR037141 |
| DBxref | InterPro:IPR024061 |
| DBxref | PFAM:PF05224 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:313934..316103 - |
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