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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:476441..478596+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006796-T1 ID=KJC3_006796-T1|Name=KJC3_006796-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2156bp|location=Sequence derived from alignment at ch5:476441..478596+ (Aspergillus niger KJC3)
TTCCTCTCAAGGTAAATCTTCATCAAGTTTCAATCCAGATTTCCCCCGTC
AACTCTCGTATCTAGGGCACCAAGCTACCCTTTTCCTCCTATCTCCCCCC
CCTCTTCAAGCTATTCCCATTCCCACTTGCTCCAAGGAATTTCAAGTACA
GGCAGCCTTTAGCTCTCCTGAGTCCTTGTCTTAACCGCACACACAAACCC
GGTCAAGACTTCCCCGCGCGCAACTTTACCACCGTTCAATTCTCTCCACG
CTCAACTCCGTTGCGTCCTCAGCCATCAAGATGTCTACTGCCGTCGAGAA
CACTACCGACAACGTCGCCTCTGCTCCCGCCACTACCGCCCCCGAGGCTA
CTACCAACGGCACTGCTCCCGCCCCTGCGCAGTCCACGGACGCTGCCGCT
GCCAGTGCCGATGAAGGACGTCGGTTGTACATTGGGAACCTCGCTTATGC
GACCACTGAGGGGGAGCTGAAGGAGTTTTTCAAGAACTACAAGATGTAAG
TTGCTTGACCTTGCTTTGCTTTGTTGTTGTTCCACCTGGCCTTTCACCTC
TCGGTTGGTCTAAGCTCCGTTGGGCTGGTCCTAGCGGTTCGGGGGCCGGC
GAGAGCCACGTTTCCTACACCCCCTTGCTGCCATCGGAGGTAGTACCGCG
CAGCGGTGGTATGTGGCCACCACTGCAGGGACGCCAATTGTTCAGAGCTC
CATTTCTGAACCCCTTCTTTGTCAAACATTCTTATGCGGGAAGTTACACC
GATCTAACAATGGCTCTTTCACAGTGAGAGCGTCTCCATCCCCGTGAACC
CTCGCACCAACCGTCCCGTTGGCTACGCCTTCGTGGACCTCGCCACTGCT
CAGGAGGCCACCGCTGCTATTGAGGAGCTGTCTGGAAAGGAGATCCTCCA
GCGTAAGGTCTCTGTGCAGCTTGCCCGCAAGCCCGAGCCTGCTGAGGCCA
AGGCCGAGGGTGCTACAAGTGGCGGTGAGGGTGCCAGCGGTAACGAGGGC
CGCAAGAGGGCTGGTGGCCGTGGCCGTGGCCGCGGCCGCGGTCGTGGTCG
TGGAGGCCGTCTGCCCCGTGCTGGTCGCTCTGTAAGTGGCTCGTCATTCA
TGCTCCATCCAATCGGATACTAATCTACCATGTAGCAGGCCCCAGTTCAG
AACGGTCAGGAGGCTGCTGAGCCCACCAACGTTCCCGCTCAGGCTGCTCC
CCTGACTGAGGTCACCAACCAGAACGAGACGGCTGCTGCCACCGAGTCCA
AGCAGGCTGGCAAGCCCCGTGCTCCTCGTCCCCAGAAGCAGCGCGGTCCT
CCCGAGGATGGCATTCCTTCCAAGACCAAGGTCATGGTCGCTAACCTTCC
TTATGACCTGACCGAAGACAAGGTACGGATGATGATTTCAGAATTTAGAG
TAACATACTAATCCCCTCTCAGCTCAAGGAGATCTTTGCCGACTACCAGC
CCGTCTCCGCCAAGATTGCTCTCCGCCCCATTCCCCGTTTCATGATCAAG
AAGCTCCAGGCTCGCAACGAGCGCCGCAAGGGCCGTGGTTTCGGTTTCGT
CACCCTTGGATCCGAGGAGCTCCAGAACAAGGCTGTTGTGGAGATGAACG
GCAAGGAGATCGAGGGCCGTGAAATCGCCGTCAAGGTCGCCATCGACAGC
CCCGGCAAGGAGGACGACGCCATCGCCCCTGCTGAGACTGAGACCACCGA
GCAGGCGACTGAGGCTCCGGCACAGGAGAACGCTGCTCCCGCCGCTGCTT
AAATGACAATCTCGTTCCCCACCTGAACGAACACACCTCCGTGGAAACTC
GGGGGATCAATTGGAGGAGGTGAAGTCGGGACCTGTCATCTGCATGGTTT
TTCATAGTGGGCGTCGGCTGGAGGCCAATTTCTTTTCCGGATGGGGAGAA
AGGCGCAAGAGCAGAGGGGAAAGGTTTAAAAGCCTAAAAAACTTTGACTA
TTCTTCCTGTTTGATCTGGTCCTAGGGGGTTCTTCTATATGTTATATACG
GATACCCGAAAGGGATTCGTTGTTGGAGATGAAAATGCCGTAATGTGATT
GTCTGACGGAACCTGACCTTTGCTCACGAATTTTGCCATTCTGCCACACT
GTGTATCTTAGCAATATTTATTTAGCTTATGATTAGCCGCAAGGCTGGCC
TTGTAA back to topCoding sequence (CDS) from alignment at ch5:476441..478596+ >KJC3_006796-T1 ID=KJC3_006796-T1|Name=KJC3_006796-T1|organism=Aspergillus niger KJC3|type=CDS|length=4356bp|location=Sequence derived from alignment at ch5:476441..478596+ (Aspergillus niger KJC3)
ATGTCTACTGCCGTCGAGAACACTACCGACAACGTCGCCTCTGCTCCCGC
CACTACCGCCCCCGAGGCTACTACCAACGGCACTGCTCCCGCCCCTGCGC
AGTCCACGGACGCTGCCGCTGCCAGTGCCGATGAAGGACGTCGGTTGTAC
ATTGGGAACCTCGCTTATGCGACCACTGAGGGGGAGCTGAAGGAGTTTTT
CAAGAACTACAAGATTGAGAGCGTCTCCATCCCCGTGAACCCTCGCACCA
ACCGTCCCGTTGGCTACGCCTTCGTGGACCTCGCCACTGCTCAGGAGGCC
ACCGCTGCTATTGAGGAGCTGTCTGGAAAGGAGATCCTCCAGCGTAAGGT
CTCTGTGCAGCTTGCCCGCAAGCCCGAGCCTGCTGAGGCCAAGGCCGAGG
GTGCTACAAGTGGCGGTGAGGGTGCCAGCGGTAACGAGGGCCGCAAGAGG
GCTGGTGGCCGTGGCCGTGGCCGCGGCCGCGGTCGTGGTCGTGGAGGCCG
TCTGCCCCGTGCTGGTCGCTCTCAGGCCCCAGTTCAGAACGGTCAGGAGG
CTGCTGAGCCCACCAACGTTCCCGCTCAGGCTGCTCCCCTGACTGAGGTC
ACCAACCAGAACGAGACGGCTGCTGCCACCGAGTCCAAGCAGGCTGGCAA
GCCCCGTGCTCCTCGTCCCCAGAAGCAGCGCGGTCCTCCCGAGGATGGCA
TTCCTTCCAAGACCAAGGTCATGGTCGCTAACCTTCCTTATGACCTGACC
GAAGACAAGCTCAAGGAGATCTTTGCCGACTACCAGCCCGTCTCCGCCAA
GATTGCTCTCCGCCCCATTCCCCGTTTCATGATCAAGAAGCTCCAGGCTC
GCAACGAGCGCCGCAAGGGCCGTGGTTTCGGTTTCGTCACCCTTGGATCC
GAGGAGCTCCAGAACAAGGCTGTTGTGGAGATGAACGGCAAGGAGATCGA
GGGCCGTGAAATCGCCGTCAAGGTCGCCATCGACAGCCCCGGCAAGGAGG
ACGACGCCATCGCCCCTGCTGAGACTGAGACCACCGAGCAGGCGACTGAG
GCTCCGGCACAGGAGAACGCTGCTCCCGCCGCTGCTTAAATGTCTACTGC
CGTCGAGAACACTACCGACAACGTCGCCTCTGCTCCCGCCACTACCGCCC
CCGAGGCTACTACCAACGGCACTGCTCCCGCCCCTGCGCAGTCCACGGAC
GCTGCCGCTGCCAGTGCCGATGAAGGACGTCGGTTGTACATTGGGAACCT
CGCTTATGCGACCACTGAGGGGGAGCTGAAGGAGTTTTTCAAGAACTACA
AGATTGAGAGCGTCTCCATCCCCGTGAACCCTCGCACCAACCGTCCCGTT
GGCTACGCCTTCGTGGACCTCGCCACTGCTCAGGAGGCCACCGCTGCTAT
TGAGGAGCTGTCTGGAAAGGAGATCCTCCAGCGTAAGGTCTCTGTGCAGC
TTGCCCGCAAGCCCGAGCCTGCTGAGGCCAAGGCCGAGGGTGCTACAAGT
GGCGGTGAGGGTGCCAGCGGTAACGAGGGCCGCAAGAGGGCTGGTGGCCG
TGGCCGTGGCCGCGGCCGCGGTCGTGGTCGTGGAGGCCGTCTGCCCCGTG
CTGGTCGCTCTCAGGCCCCAGTTCAGAACGGTCAGGAGGCTGCTGAGCCC
ACCAACGTTCCCGCTCAGGCTGCTCCCCTGACTGAGGTCACCAACCAGAA
CGAGACGGCTGCTGCCACCGAGTCCAAGCAGGCTGGCAAGCCCCGTGCTC
CTCGTCCCCAGAAGCAGCGCGGTCCTCCCGAGGATGGCATTCCTTCCAAG
ACCAAGGTCATGGTCGCTAACCTTCCTTATGACCTGACCGAAGACAAGCT
CAAGGAGATCTTTGCCGACTACCAGCCCGTCTCCGCCAAGATTGCTCTCC
GCCCCATTCCCCGTTTCATGATCAAGAAGCTCCAGGCTCGCAACGAGCGC
CGCAAGGGCCGTGGTTTCGGTTTCGTCACCCTTGGATCCGAGGAGCTCCA
GAACAAGGCTGTTGTGGAGATGAACGGCAAGGAGATCGAGGGCCGTGAAA
TCGCCGTCAAGGTCGCCATCGACAGCCCCGGCAAGGAGGACGACGCCATC
GCCCCTGCTGAGACTGAGACCACCGAGCAGGCGACTGAGGCTCCGGCACA
GGAGAACGCTGCTCCCGCCGCTGCTTAAATGTCTACTGCCGTCGAGAACA
CTACCGACAACGTCGCCTCTGCTCCCGCCACTACCGCCCCCGAGGCTACT
ACCAACGGCACTGCTCCCGCCCCTGCGCAGTCCACGGACGCTGCCGCTGC
CAGTGCCGATGAAGGACGTCGGTTGTACATTGGGAACCTCGCTTATGCGA
CCACTGAGGGGGAGCTGAAGGAGTTTTTCAAGAACTACAAGATTGAGAGC
GTCTCCATCCCCGTGAACCCTCGCACCAACCGTCCCGTTGGCTACGCCTT
CGTGGACCTCGCCACTGCTCAGGAGGCCACCGCTGCTATTGAGGAGCTGT
CTGGAAAGGAGATCCTCCAGCGTAAGGTCTCTGTGCAGCTTGCCCGCAAG
CCCGAGCCTGCTGAGGCCAAGGCCGAGGGTGCTACAAGTGGCGGTGAGGG
TGCCAGCGGTAACGAGGGCCGCAAGAGGGCTGGTGGCCGTGGCCGTGGCC
GCGGCCGCGGTCGTGGTCGTGGAGGCCGTCTGCCCCGTGCTGGTCGCTCT
CAGGCCCCAGTTCAGAACGGTCAGGAGGCTGCTGAGCCCACCAACGTTCC
CGCTCAGGCTGCTCCCCTGACTGAGGTCACCAACCAGAACGAGACGGCTG
CTGCCACCGAGTCCAAGCAGGCTGGCAAGCCCCGTGCTCCTCGTCCCCAG
AAGCAGCGCGGTCCTCCCGAGGATGGCATTCCTTCCAAGACCAAGGTCAT
GGTCGCTAACCTTCCTTATGACCTGACCGAAGACAAGCTCAAGGAGATCT
TTGCCGACTACCAGCCCGTCTCCGCCAAGATTGCTCTCCGCCCCATTCCC
CGTTTCATGATCAAGAAGCTCCAGGCTCGCAACGAGCGCCGCAAGGGCCG
TGGTTTCGGTTTCGTCACCCTTGGATCCGAGGAGCTCCAGAACAAGGCTG
TTGTGGAGATGAACGGCAAGGAGATCGAGGGCCGTGAAATCGCCGTCAAG
GTCGCCATCGACAGCCCCGGCAAGGAGGACGACGCCATCGCCCCTGCTGA
GACTGAGACCACCGAGCAGGCGACTGAGGCTCCGGCACAGGAGAACGCTG
CTCCCGCCGCTGCTTAAATGTCTACTGCCGTCGAGAACACTACCGACAAC
GTCGCCTCTGCTCCCGCCACTACCGCCCCCGAGGCTACTACCAACGGCAC
TGCTCCCGCCCCTGCGCAGTCCACGGACGCTGCCGCTGCCAGTGCCGATG
AAGGACGTCGGTTGTACATTGGGAACCTCGCTTATGCGACCACTGAGGGG
GAGCTGAAGGAGTTTTTCAAGAACTACAAGATTGAGAGCGTCTCCATCCC
CGTGAACCCTCGCACCAACCGTCCCGTTGGCTACGCCTTCGTGGACCTCG
CCACTGCTCAGGAGGCCACCGCTGCTATTGAGGAGCTGTCTGGAAAGGAG
ATCCTCCAGCGTAAGGTCTCTGTGCAGCTTGCCCGCAAGCCCGAGCCTGC
TGAGGCCAAGGCCGAGGGTGCTACAAGTGGCGGTGAGGGTGCCAGCGGTA
ACGAGGGCCGCAAGAGGGCTGGTGGCCGTGGCCGTGGCCGCGGCCGCGGT
CGTGGTCGTGGAGGCCGTCTGCCCCGTGCTGGTCGCTCTCAGGCCCCAGT
TCAGAACGGTCAGGAGGCTGCTGAGCCCACCAACGTTCCCGCTCAGGCTG
CTCCCCTGACTGAGGTCACCAACCAGAACGAGACGGCTGCTGCCACCGAG
TCCAAGCAGGCTGGCAAGCCCCGTGCTCCTCGTCCCCAGAAGCAGCGCGG
TCCTCCCGAGGATGGCATTCCTTCCAAGACCAAGGTCATGGTCGCTAACC
TTCCTTATGACCTGACCGAAGACAAGCTCAAGGAGATCTTTGCCGACTAC
CAGCCCGTCTCCGCCAAGATTGCTCTCCGCCCCATTCCCCGTTTCATGAT
CAAGAAGCTCCAGGCTCGCAACGAGCGCCGCAAGGGCCGTGGTTTCGGTT
TCGTCACCCTTGGATCCGAGGAGCTCCAGAACAAGGCTGTTGTGGAGATG
AACGGCAAGGAGATCGAGGGCCGTGAAATCGCCGTCAAGGTCGCCATCGA
CAGCCCCGGCAAGGAGGACGACGCCATCGCCCCTGCTGAGACTGAGACCA
CCGAGCAGGCGACTGAGGCTCCGGCACAGGAGAACGCTGCTCCCGCCGCT
GCTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006796-T1.utr5p1 | KJC3_006796-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006796-T1.utr3p1 | KJC3_006796-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:476441..478596 + |
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